Rh6DG363000

UPF0695 membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001325
Physical Location & Seq
Forward (+)
56016294 .. 56021219
4926 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG363000.1

Sequence Viewer

Length: 1377 bp
ATGCATCCATTGCCGCCATCCTCCTCAGATAGAAGCTTGCGAACCCTTTTGAATCAGTCACCACAAGAGAAACAAAGCCCTGTGATTATGGAGGGAGCAGGGTACCGAGGTACTGACCCTGAACCCGGAAGTAGTGTACCCAGTAGTGCCAATTCTTCTTCAAAAATGTGTTCTTCAAGTGTATCAGGTGCTCAGCCTTCTGGAATAGATGATGACCCTGATGAGTGTGTGTCTGAGGTGGGAGATATTGGGGATCGAGCTCTGCACAGCAACAGGAACAGTTTCAGTGAGAGCCTTAACAACTTGTCTGGAGAGGATGTTTTATTGCCATCCTATGGGTTTTGGTGTCGTGATCGTACTGCATCCCGTGCTATCCCCACTGTGCCTTTGCCAGAGGAGATCATATCTCTTTCCATTGATGTGGCATCACGCAATGAAGATAAAAAGCAAGTGAGCTTTCGGTTGGAAAATACAAATAAGTTGCTGCCAAAGTGGATGGAGTATGGTTCATGTATGACACATTTAGCCGTTTTTGGTATTCTTGGGGTCTTGACGAGGTATCTACTGCAAAAATTGTTTGGCCCTGGAGGTGCTGGTGTGACAAGTGACCAAACAATTCTTTACCTTGATCTTCCTTCTAATATGGTTGGTTCTTTCTTGATGGGATGGTGGGGTGTTGTTTTCAAAGCAGATATATCCTATGTGTCAGATTTTTTGGCCATTGGATTGTCAACCGGTTATCTGGGAAGCCTTACTACTTTCAGTGGTTGGAACCAGAAAATGCTTGAACTCAGTGTTCAAGGCCATTGGCCTTTTGCTGTGCTTGGCAATTTAATAGGTTTATTTCTTGCGGCATACTCTATTATTTTTGGGATAGAGACATCTAAGGGTTTCAGGCAGCTTCTTAAAAGGTGTTCAGGGTCTGACATTGCCATCTCTAGAAAGACCTGGAGGGTTGACAGCTACAAGCGCCACTTGGCAGTTTGGGCAGTGTTGCTGGTGATGCTAGGTTGTCTATGGAGTGTGAGTGGAATCTTGGTGAAGGAGGACTTTAGAAATGACAGCAGTGAGACACATCTATGGTTGGCCTGCATCATTGGACCTGTAGGTGTGTGGATCAGGTGGTTCTTAGCTCGACTCAATGGACGTGGATTAGGAAAGACAGGGTTGTTAAAATGGCTTCCATTTGGTACTCTAATTGCAAATGTTTCTGCGGCTTGTATCATGGCAGCCCTTGCTACTGTGGAGAAAGAGGTAAGGTCTTTTAATCTGATTTCTGTTCAGACCTGCACTGAGACTATACCTCTTTACTTTTTTTCCCGCCATTCTGTCATACTTGAAAAGCTTACAATTTCACATATATTTGTCACATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRCB

Protein Analysis

458

Amino Acids

50.25

Weight (kDa)

7.07

Isoelectric Point (pI)

48.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRCB PF02537 175 - 291 4.8e-14 CrcB-like protein, Camphor Resistance (CrcB)
CRCB PF02537 362 - 430 4.2e-07 CrcB-like protein, Camphor Resistance (CrcB)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1375
Acc36I ACCTGC 1 cut(s) 1295
Acc65I GGTACC 1 cut(s) 102
AccB1I GGYRCC 1 cut(s) 102
AccB7I CCANNNNNTGG 1 cut(s) 335
AciI CCGC 4 cut(s) 14, 851, 1214, 1321
AclWI GGATC 2 cut(s) 261, 1124
AcoI YGGCCR 1 cut(s) 717
AfaI GTAC 5 cut(s) 104, 112, 138, 358, 1192
AfiI CCNNNNNNNGG 2 cut(s) 125, 335
AgeI ACCGGT 1 cut(s) 734
AgsI TTSAA 7 cut(s) 52, 162, 177, 685, 788, 800, 1340
AjiI CACGTC 1 cut(s) 1148
AjnI CCWGG 2 cut(s) 583, 947
AluBI AGCT 7 cut(s) 36, 260, 456, 901, 963, 1133, 1345
AluI AGCT 7 cut(s) 36, 260, 456, 901, 963, 1133, 1345
Alw21I GWGCWC 2 cut(s) 193, 262
Alw26I GTCTC 3 cut(s) 872, 1064, 1289
AlwI GGATC 2 cut(s) 261, 1124
AlwNI CAGNNNCTG 1 cut(s) 923
AoxI GGCC 5 cut(s) 580, 717, 802, 809, 1086
ApeKI GCWGC 3 cut(s) 484, 898, 1229
AsiGI ACCGGT 1 cut(s) 734
Asp700I GAANNNNTTC 1 cut(s) 281
Asp718I GGTACC 1 cut(s) 102
AspLEI GCGC 1 cut(s) 972
AspS9I GGNCC 2 cut(s) 581, 1100
AsuC2I CCSGG 1 cut(s) 126
AsuHPI GGTGA 3 cut(s) 51, 1012, 1051
AvaII GGWCC 1 cut(s) 1100
BaeI ACNNNNGTAYC 2 cut(s) 94, 127
BalI TGGCCA 1 cut(s) 719
BanI GGYRCC 1 cut(s) 102
BanII GRGCYC 1 cut(s) 262
BarI GAAGNNNNNNTAC 2 cut(s) 739, 771
Bbv12I GWGCWC 2 cut(s) 193, 262
BbvI GCAGC 3 cut(s) 471, 910, 1241
BccI CCATC 6 cut(s) 25, 337, 490, 655, 660, 941
BceAI ACGGC 1 cut(s) 512
BciT130I CCWGG 2 cut(s) 585, 949
BcnI CCSGG 1 cut(s) 126
BcoDI GTCTC 3 cut(s) 872, 1064, 1289
BfaI CTAG 2 cut(s) 939, 1007
BfmI CTRYAG 1 cut(s) 1104
BfoI RGCGCY 1 cut(s) 973
BfuAI ACCTGC 1 cut(s) 1295
BisI GCNGC 6 cut(s) 14, 485, 852, 899, 1215, 1230
BlpI GCTNAGC 1 cut(s) 192
BlsI GCNGC 6 cut(s) 15, 486, 853, 900, 1216, 1231
Bme1390I CCNGG 3 cut(s) 126, 585, 949
Bme18I GGWCC 1 cut(s) 1100
BmgBI CACGTC 1 cut(s) 1148
BmgT120I GGNCC 2 cut(s) 581, 1100
BmiI GGNNCC 2 cut(s) 104, 773
BmrFI CCNGG 3 cut(s) 126, 585, 949
BmrI ACTGGG 1 cut(s) 135
BmsI GCATC 5 cut(s) 13, 371, 434, 993, 1101
BmuI ACTGGG 1 cut(s) 135
BpmI CTGGAG 3 cut(s) 330, 606, 970
Bpu1102I GCTNAGC 1 cut(s) 192
BpuMI CCSGG 1 cut(s) 126
BsaJI CCNNGG 2 cut(s) 106, 583
BsaWI WCCGGW 1 cut(s) 734
BsaXI ACNNNNNCTCC 4 cut(s) 303, 333, 1012, 1042
Bsc4I CCNNNNNNNGG 2 cut(s) 125, 335
Bse118I RCCGGY 1 cut(s) 734
Bse1I ACTGG 1 cut(s) 141
Bse3DI GCAATG 3 cut(s) 8, 439, 927
BseBI CCWGG 2 cut(s) 585, 949
BseDI CCNNGG 2 cut(s) 106, 583
BseGI GGATG 7 cut(s) 4, 17, 322, 329, 362, 501, 671
BseLI CCNNNNNNNGG 2 cut(s) 125, 335
BseMI GCAATG 3 cut(s) 8, 439, 927
BseMII CTCAG 5 cut(s) 39, 206, 225, 805, 1284
BseNI ACTGG 1 cut(s) 141
BseRI GAGGAG 2 cut(s) 13, 410
BseXI GCAGC 3 cut(s) 471, 910, 1241
BsgI GTGCAG 2 cut(s) 248, 1273
BshFI GGCC 5 cut(s) 582, 719, 804, 811, 1088
BshNI GGYRCC 1 cut(s) 102
BshTI ACCGGT 1 cut(s) 734
BsiHKAI GWGCWC 2 cut(s) 193, 262
BsiSI CCGG 2 cut(s) 126, 735
BslI CCNNNNNNNGG 2 cut(s) 125, 335
BsmAI GTCTC 3 cut(s) 872, 1064, 1289
BsnI GGCC 5 cut(s) 582, 719, 804, 811, 1088
Bsp1286I GDGCHC 2 cut(s) 193, 262
Bsp143I GATC 5 cut(s) 253, 352, 399, 628, 1116
Bsp1720I GCTNAGC 1 cut(s) 192
BspACI CCGC 4 cut(s) 14, 851, 1214, 1321
BspANI GGCC 5 cut(s) 582, 719, 804, 811, 1088
BspCNI CTCAG 5 cut(s) 38, 205, 226, 804, 1285
BspLI GGNNCC 2 cut(s) 104, 773
BspMI ACCTGC 1 cut(s) 1295
BspPI GGATC 2 cut(s) 261, 1124
BspT107I GGYRCC 1 cut(s) 102
BsrDI GCAATG 3 cut(s) 8, 439, 927
BsrFI RCCGGY 1 cut(s) 734
BsrI ACTGG 1 cut(s) 141
BssAI RCCGGY 1 cut(s) 734
BssECI CCNNGG 2 cut(s) 106, 583
BssMI GATC 5 cut(s) 253, 352, 399, 628, 1116
Bst2UI CCWGG 2 cut(s) 585, 949
Bst4CI ACNGT 3 cut(s) 281, 382, 1243
BstAPI GCANNNNNTGC 3 cut(s) 10, 368, 1235
BstC8I GCNNGC 2 cut(s) 38, 1090
BstDEI CTNAG 7 cut(s) 25, 192, 234, 791, 885, 1129, 1293
BstF5I GGATG 7 cut(s) 4, 17, 322, 329, 362, 501, 671
BstH2I RGCGCY 1 cut(s) 973
BstHHI GCGC 1 cut(s) 972
BstKTI GATC 5 cut(s) 256, 355, 402, 631, 1119
BstMAI GTCTC 3 cut(s) 872, 1064, 1289
BstMBI GATC 5 cut(s) 253, 352, 399, 628, 1116
BstMWI GCNNNNNNNGC 6 cut(s) 10, 368, 969, 986, 1003, 1235
BstNI CCWGG 2 cut(s) 585, 949
BstSCI CCNGG 3 cut(s) 124, 583, 947
BstSFI CTRYAG 1 cut(s) 1104
BstV1I GCAGC 3 cut(s) 471, 910, 1241
BstXI CCANNNNNNTGG 1 cut(s) 421
BsuRI GGCC 5 cut(s) 582, 719, 804, 811, 1088
BtrI CACGTC 1 cut(s) 1148
BtsCI GGATG 7 cut(s) 4, 17, 322, 329, 362, 501, 671
BtsI GCAGTG 2 cut(s) 996, 1072
BtsIMutI CAGTG 7 cut(s) 292, 378, 769, 799, 996, 1072, 1290
BveI ACCTGC 1 cut(s) 1295
Cac8I GCNNGC 2 cut(s) 38, 1090
CaiI CAGNNNCTG 1 cut(s) 923
CfoI GCGC 1 cut(s) 972
Cfr10I RCCGGY 1 cut(s) 734
Cfr13I GGNCC 2 cut(s) 581, 1100
Csp6I GTAC 5 cut(s) 103, 111, 137, 357, 1191
CspAI ACCGGT 1 cut(s) 734
CspCI CAANNNNNGTGG 2 cut(s) 1129, 1164
CviAII CATG 2 cut(s) 510, 1225
CviQI GTAC 5 cut(s) 103, 111, 137, 357, 1191
DdeI CTNAG 7 cut(s) 25, 192, 234, 791, 885, 1129, 1293
DpnI GATC 5 cut(s) 255, 354, 401, 630, 1118
DpnII GATC 5 cut(s) 253, 352, 399, 628, 1116
EaeI YGGCCR 1 cut(s) 717
Ecl136II GAGCTC 1 cut(s) 260
Eco24I GRGCYC 1 cut(s) 262
Eco47I GGWCC 1 cut(s) 1100
Eco53kI GAGCTC 1 cut(s) 260
EcoICRI GAGCTC 1 cut(s) 260
EcoRII CCWGG 2 cut(s) 583, 947
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 262
FaeI CATG 2 cut(s) 513, 1228
FalI AAGNNNNNCTT 4 cut(s) 959, 991, 1034, 1066
FatI CATG 2 cut(s) 509, 1224
FauI CCCGC 1 cut(s) 1328
Fnu4HI GCNGC 6 cut(s) 14, 485, 852, 899, 1215, 1230
FokI GGATG 6 cut(s) 4, 316, 329, 349, 508, 678
FriOI GRGCYC 1 cut(s) 262
Fsp4HI GCNGC 6 cut(s) 14, 485, 852, 899, 1215, 1230
FspBI CTAG 2 cut(s) 939, 1007
GlaI GCGC 1 cut(s) 971
GluI GCNGC 6 cut(s) 14, 485, 852, 899, 1215, 1230
GsuI CTGGAG 3 cut(s) 330, 606, 970
HaeII RGCGCY 1 cut(s) 973
HaeIII GGCC 5 cut(s) 582, 719, 804, 811, 1088
HapII CCGG 2 cut(s) 126, 735
HhaI GCGC 1 cut(s) 972
Hin1II CATG 2 cut(s) 513, 1228
Hin6I GCGC 1 cut(s) 970
HinP1I GCGC 1 cut(s) 970
HincII GTYRAC 2 cut(s) 732, 958
HindII GTYRAC 2 cut(s) 732, 958
HindIII AAGCTT 2 cut(s) 34, 1343
HinfI GANTC 3 cut(s) 52, 1032, 1137
HpaII CCGG 2 cut(s) 126, 735
HphI GGTGA 3 cut(s) 51, 1012, 1051
Hpy166II GTNNAC 3 cut(s) 137, 732, 958
Hpy188I TCNGA 6 cut(s) 28, 235, 709, 925, 1272, 1284
Hpy188III TCNNGA 6 cut(s) 201, 309, 350, 550, 658, 939
Hpy8I GTNNAC 3 cut(s) 137, 732, 958
HpyAV CCTTC 3 cut(s) 207, 645, 1036
HpyCH4III ACNGT 3 cut(s) 281, 382, 1243
HpyCH4IV ACGT 1 cut(s) 1147
HpyCH4V TGCA 7 cut(s) 4, 265, 362, 568, 1092, 1202, 1290
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 368, 969, 986, 1003, 1235
HpyF3I CTNAG 7 cut(s) 25, 192, 234, 791, 885, 1129, 1293
HpySE526I ACGT 1 cut(s) 1147
Hsp92II CATG 2 cut(s) 513, 1228
HspAI GCGC 1 cut(s) 970
KpnI GGTACC 1 cut(s) 106
Kzo9I GATC 5 cut(s) 253, 352, 399, 628, 1116
LmnI GCTCC 1 cut(s) 95
Lsp1109I GCAGC 3 cut(s) 471, 910, 1241
LweI GCATC 5 cut(s) 13, 371, 434, 993, 1101
MaeI CTAG 2 cut(s) 939, 1007
MaeII ACGT 1 cut(s) 1147
MaeIII GTNAC 4 cut(s) 57, 598, 605, 1366
MalI GATC 5 cut(s) 255, 354, 401, 630, 1118
MboI GATC 5 cut(s) 253, 352, 399, 628, 1116
MboII GAAGA 5 cut(s) 147, 150, 165, 449, 623
MhlI GDGCHC 2 cut(s) 193, 262
MlsI TGGCCA 1 cut(s) 719
MluCI AATT 6 cut(s) 151, 572, 615, 829, 1197, 1350
MluNI TGGCCA 1 cut(s) 719
MlyI GAGTC 1 cut(s) 1131
MmeI TCCRAC 2 cut(s) 444, 749
Mox20I TGGCCA 1 cut(s) 719
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 281
MscI TGGCCA 1 cut(s) 719
MseI TTAA 5 cut(s) 297, 833, 906, 1172, 1266
MslI CAYNNNNRTG 2 cut(s) 419, 1078
Msp20I TGGCCA 1 cut(s) 719
MspI CCGG 2 cut(s) 126, 735
MspR9I CCNGG 3 cut(s) 126, 585, 949
MvaI CCWGG 2 cut(s) 585, 949
MwoI GCNNNNNNNGC 6 cut(s) 10, 368, 969, 986, 1003, 1235
NciI CCSGG 1 cut(s) 126
NdeII GATC 5 cut(s) 253, 352, 399, 628, 1116
NlaIII CATG 2 cut(s) 513, 1228
NlaIV GGNNCC 2 cut(s) 104, 773
NmuCI GTSAC 4 cut(s) 57, 598, 605, 1366
NsiI ATGCAT 1 cut(s) 6
PdmI GAANNNNTTC 1 cut(s) 281
PfeI GAWTC 2 cut(s) 52, 1032
PflMI CCANNNNNTGG 1 cut(s) 335
PinAI ACCGGT 1 cut(s) 734
PkrI GCNGC 6 cut(s) 15, 486, 853, 900, 1216, 1231
PleI GAGTC 1 cut(s) 1131
PpsI GAGTC 1 cut(s) 1131
PsiI TTATAA 1 cut(s) 1375
Psp124BI GAGCTC 1 cut(s) 262
Psp6I CCWGG 2 cut(s) 583, 947
PspGI CCWGG 2 cut(s) 583, 947
PspN4I GGNNCC 2 cut(s) 104, 773
PspPI GGNCC 2 cut(s) 581, 1100
PstNI CAGNNNCTG 1 cut(s) 923
RsaI GTAC 5 cut(s) 104, 112, 138, 358, 1192
RsaNI GTAC 5 cut(s) 103, 111, 137, 357, 1191
RseI CAYNNNNRTG 2 cut(s) 419, 1078
SacI GAGCTC 1 cut(s) 262
SaqAI TTAA 5 cut(s) 297, 833, 906, 1172, 1266
SatI GCNGC 6 cut(s) 14, 485, 852, 899, 1215, 1230
Sau3AI GATC 5 cut(s) 253, 352, 399, 628, 1116
Sau96I GGNCC 2 cut(s) 581, 1100
SchI GAGTC 1 cut(s) 1131
ScrFI CCNGG 3 cut(s) 126, 585, 949
SduI GDGCHC 2 cut(s) 193, 262
SfaNI GCATC 5 cut(s) 13, 371, 434, 993, 1101
SfcI CTRYAG 1 cut(s) 1104
SinI GGWCC 1 cut(s) 1100
SmiMI CAYNNNNRTG 2 cut(s) 419, 1078
Sse9I AATT 6 cut(s) 151, 572, 615, 829, 1197, 1350
SsiI CCGC 4 cut(s) 14, 851, 1214, 1321
SspMI CTAG 2 cut(s) 939, 1007
SstI GAGCTC 1 cut(s) 262
StyD4I CCNGG 3 cut(s) 124, 583, 947
TaaI ACNGT 3 cut(s) 281, 382, 1243
TaiI ACGT 1 cut(s) 1150
TaqI TCGA 2 cut(s) 256, 1135
TasI AATT 6 cut(s) 151, 572, 615, 829, 1197, 1350
TauI GCSGC 3 cut(s) 16, 854, 1217
TfiI GAWTC 2 cut(s) 52, 1032
Tru1I TTAA 5 cut(s) 297, 833, 906, 1172, 1266
Tru9I TTAA 5 cut(s) 297, 833, 906, 1172, 1266
TscAI CASTG 7 cut(s) 292, 385, 769, 799, 996, 1072, 1297
TseFI GTSAC 4 cut(s) 57, 598, 605, 1366
TseI GCWGC 3 cut(s) 484, 898, 1229
Tsp45I GTSAC 4 cut(s) 57, 598, 605, 1366
TspDTI ATGAA 2 cut(s) 450, 498
TspRI CASTG 7 cut(s) 292, 385, 769, 799, 996, 1072, 1297
Van91I CCANNNNNTGG 1 cut(s) 335
VpaK11BI GGWCC 1 cut(s) 1100
XbaI TCTAGA 1 cut(s) 938
XmnI GAANNNNTTC 1 cut(s) 281
XspI CTAG 2 cut(s) 939, 1007
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.