MD05G1028400.v1.1

UPF0695 membrane protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
4649334 .. 4652638
3305 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1028400.v1.1.491

Sequence Viewer

Length: 693 bp
ATGTCACTTCAAGAGAAATCAAGCGTTGTGGTTATGGAGGAAGGGTACAGTGGGACTAATGACACTGAACCCAGACGAAGTGTATCCAATGATCGAACAAGTAGTGCCACTTCTTCATTAAGGAGGCGGTCTTTAACTTTATCCCATGTTCAGCCTTCTCAAATAGATGATGACGATGAAAGTGAATGTGTGTCAGAGGCAGGAGATATTGGCGATCGGGCTCTTCACAGCAACAGGCACAGTGAGAGTGGCAGCGTCTGCCTGTTTCCTTCAGAGGATGTTCAACTGCAAACCTATGGATTATGGGGTCGTGACCCTGTTACATCCAAAGCAATTTCCCCTGTCACTCCCTTGCCAAAGGAAATCATACCTCCTATTTCCACTGATGCGATCATATCCGATGACAAAAACCCAGTGAGCTTTCGGAAAATACAACAAGGTTGCCAAAATGATTGGAATATGGTTAGCTCTTTCTTGATGGGGTGGTTTGGTGTTGTTTTCAAAGGAGATATATCATGTATGTCAGATTATTTGGTCATCGGATTATCAACTGGTTACTTGGGAAGCCTTACAACTTTCAGTGGTTGGAACCAGAAAATGCTTGAACTCAGTGTTGAAGGACATTGGGTTTTTGCTGTGCTCAACTTTTTGATAGGTAATAAGATGTCATGTTCTAAAGAATTGCTGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

231

Amino Acids

25.34

Weight (kDa)

4.82

Isoelectric Point (pI)

62.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRCB PF02537 153 - 218 1.4e-09 CrcB-like protein, Camphor Resistance (CrcB)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 127
AcuI CTGAAG 1 cut(s) 255
AfaI GTAC 1 cut(s) 47
AgsI TTSAA 5 cut(s) 11, 284, 502, 605, 617
AluBI AGCT 2 cut(s) 420, 468
AluI AGCT 2 cut(s) 420, 468
Alw21I GWGCWC 1 cut(s) 642
AlwNI CAGNNNCTG 1 cut(s) 258
ApeKI GCWGC 2 cut(s) 252, 685
BanII GRGCYC 1 cut(s) 223
BarI GAAGNNNNNNTAC 2 cut(s) 94, 126
Bbv12I GWGCWC 1 cut(s) 642
BbvI GCAGC 2 cut(s) 264, 672
BccI CCATC 1 cut(s) 472
BciVI GTATCC 1 cut(s) 94
BfmI CTRYAG 1 cut(s) 686
BfuI GTATCC 1 cut(s) 94
BisI GCNGC 2 cut(s) 253, 686
BlsI GCNGC 2 cut(s) 254, 687
BmiI GGNNCC 1 cut(s) 590
BmrI ACTGGG 1 cut(s) 407
BmsI GCATC 1 cut(s) 376
BmuI ACTGGG 1 cut(s) 407
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bse1I ACTGG 2 cut(s) 413, 556
BseGI GGATG 2 cut(s) 283, 323
BseMII CTCAG 1 cut(s) 622
BseNI ACTGG 2 cut(s) 413, 556
BseXI GCAGC 2 cut(s) 264, 672
Bsh1285I CGRYCG 1 cut(s) 217
BsiEI CGRYCG 1 cut(s) 217
BsiHKAI GWGCWC 1 cut(s) 642
BslFI GGGAC 1 cut(s) 67
BsmFI GGGAC 1 cut(s) 67
Bsp1286I GDGCHC 2 cut(s) 223, 642
Bsp143I GATC 3 cut(s) 91, 214, 390
BspACI CCGC 1 cut(s) 127
BspCNI CTCAG 1 cut(s) 621
BspLI GGNNCC 1 cut(s) 590
BspMAI CTGCAG 1 cut(s) 690
BspQI GCTCTTC 1 cut(s) 228
BsrI ACTGG 2 cut(s) 413, 556
BssMI GATC 3 cut(s) 91, 214, 390
Bst4CI ACNGT 2 cut(s) 50, 242
Bst6I CTCTTC 1 cut(s) 228
BstAPI GCANNNNNTGC 1 cut(s) 258
BstDEI CTNAG 1 cut(s) 608
BstF5I GGATG 2 cut(s) 283, 323
BstKTI GATC 3 cut(s) 94, 217, 393
BstMBI GATC 3 cut(s) 91, 214, 390
BstMCI CGRYCG 1 cut(s) 217
BstMWI GCNNNNNNNGC 1 cut(s) 258
BstSFI CTRYAG 1 cut(s) 686
BstV1I GCAGC 2 cut(s) 264, 672
BsuI GTATCC 1 cut(s) 94
BtsCI GGATG 2 cut(s) 283, 323
BtsIMutI CAGTG 7 cut(s) 55, 63, 247, 381, 420, 586, 616
CaiI CAGNNNCTG 1 cut(s) 258
CseI GACGC 1 cut(s) 244
Csp6I GTAC 1 cut(s) 46
CspCI CAANNNNNGTGG 2 cut(s) 9, 44
CviAII CATG 3 cut(s) 146, 516, 669
CviJI RGCY 5 cut(s) 154, 221, 420, 468, 567
CviKI_1 RGCY 5 cut(s) 154, 221, 420, 468, 567
CviQI GTAC 1 cut(s) 46
DdeI CTNAG 1 cut(s) 608
DpnI GATC 3 cut(s) 93, 216, 392
DpnII GATC 3 cut(s) 91, 214, 390
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Eco24I GRGCYC 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 255
EcoT38I GRGCYC 1 cut(s) 223
FaeI CATG 3 cut(s) 149, 519, 672
FaqI GGGAC 1 cut(s) 67
FatI CATG 3 cut(s) 145, 515, 668
Fnu4HI GCNGC 2 cut(s) 253, 686
FokI GGATG 2 cut(s) 290, 310
FriOI GRGCYC 1 cut(s) 223
Fsp4HI GCNGC 2 cut(s) 253, 686
GluI GCNGC 2 cut(s) 253, 686
HgaI GACGC 1 cut(s) 244
Hin1II CATG 3 cut(s) 149, 519, 672
Hpy188I TCNGA 6 cut(s) 196, 274, 400, 426, 526, 542
Hpy188III TCNNGA 3 cut(s) 11, 311, 475
HpyAV CCTTC 4 cut(s) 35, 165, 279, 611
HpyCH4III ACNGT 2 cut(s) 50, 242
HpyCH4V TGCA 2 cut(s) 289, 688
HpyF10VI GCNNNNNNNGC 1 cut(s) 258
HpyF3I CTNAG 1 cut(s) 608
Hsp92II CATG 3 cut(s) 149, 519, 672
Kzo9I GATC 3 cut(s) 91, 214, 390
LguI GCTCTTC 1 cut(s) 228
LpnPI CCDG 9 cut(s) 85, 186, 220, 275, 330, 354, 426, 537, 605
Lsp1109I GCAGC 2 cut(s) 264, 672
LweI GCATC 1 cut(s) 376
MaeIII GTNAC 5 cut(s) 3, 311, 319, 343, 554
MalI GATC 3 cut(s) 93, 216, 392
MboI GATC 3 cut(s) 91, 214, 390
MboII GAAGA 2 cut(s) 105, 215
MhlI GDGCHC 2 cut(s) 223, 642
MluCI AATT 2 cut(s) 333, 680
MmeI TCCRAC 1 cut(s) 566
MnlI CCTC 5 cut(s) 31, 117, 190, 268, 381
MseI TTAA 2 cut(s) 119, 134
MwoI GCNNNNNNNGC 1 cut(s) 258
NdeII GATC 3 cut(s) 91, 214, 390
NlaIII CATG 3 cut(s) 149, 519, 672
NlaIV GGNNCC 1 cut(s) 590
NmuCI GTSAC 3 cut(s) 3, 311, 343
PciSI GCTCTTC 1 cut(s) 228
PkrI GCNGC 2 cut(s) 254, 687
Ple19I CGATCG 1 cut(s) 217
PspN4I GGNNCC 1 cut(s) 590
PstI CTGCAG 1 cut(s) 690
PstNI CAGNNNCTG 1 cut(s) 258
PvuI CGATCG 1 cut(s) 217
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SapI GCTCTTC 1 cut(s) 228
SaqAI TTAA 2 cut(s) 119, 134
SatI GCNGC 2 cut(s) 253, 686
Sau3AI GATC 3 cut(s) 91, 214, 390
SduI GDGCHC 2 cut(s) 223, 642
SetI ASST 6 cut(s) 296, 373, 422, 442, 470, 658
SfaNI GCATC 1 cut(s) 376
SfcI CTRYAG 1 cut(s) 686
Sse9I AATT 2 cut(s) 333, 680
SsiI CCGC 1 cut(s) 127
TaaI ACNGT 2 cut(s) 50, 242
TaqI TCGA 1 cut(s) 94
TasI AATT 2 cut(s) 333, 680
Tru1I TTAA 2 cut(s) 119, 134
Tru9I TTAA 2 cut(s) 119, 134
TscAI CASTG 7 cut(s) 55, 70, 247, 388, 420, 586, 616
TseFI GTSAC 3 cut(s) 3, 311, 343
TseI GCWGC 2 cut(s) 252, 685
Tsp45I GTSAC 3 cut(s) 3, 311, 343
TspDTI ATGAA 2 cut(s) 105, 192
TspRI CASTG 7 cut(s) 55, 70, 247, 388, 420, 586, 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.