Rmu_ssc0000041.1_g000022

UPF0695 membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000041.1
OG0001325
Physical Location & Seq
Reverse (-)
92642 .. 95389
2748 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000041.1_g000022.1.cds

Sequence Viewer

Length: 1368 bp
atggaggggggagagtacagtgggactaatgactctgaactgagagcaagtgtatcaatcgatgtgacaagaagtgccagttcttcattaaggtggcgctctttaagttcattaggtgctcatccctctcaagtagatgaagacattgaaagtgatagtgtgtcagaggtgggagatattggggatcgagctcttcacagcaacaggtacagtgtaagtggcagtttcaacttctcatctgcagaggatattcaattgcaatcctatggattctggtgtcatgatcctactgcatcccatgcaatctccacggtgtcgcctttgccagaggaaatcatttctcccctgtctactgatgccatagcaagtacagaaagaataccaaaattgttggagtatggttcatgtatgactcatctagccttctttggcattctaggggtcttaacgagatatctactgcaaaaattgttcggccccggagttgctggtgtgacaagtgaccaaacaattctttaccttgatcttccttctaatatggttggctctttcttgatggggtggtgcggtgttgtttttaaagcagatatatcatataggtcagattttttggcaattggattgacaacaggttacctgggaagtgttacaacttttagtggttggaaccagaaaatgcttgaactgagtgtcgaaggccattgggtttttgcaggtctcggttttttaataggtttgtttcttgctgcctactccatcatttttggggtagaaacatccaagtgttttaggcagctgcttgtaaggagttcagggtatggtgttgctacctctagaaagagctggagagttgacagcctcaagcgtcacttggcagttttggcagtgtttctgctgttgctagctggattatggagtatgagtggaatattgatgaggcaggagtttaacagcagcagcagtgagacacaactttggttggcttgcattattggacctctaggagtctgggtcaggtggttcttagctcgactaaatggacgtggattgggaaagacagggttgttaaaatgggttccatttggtactctaattgccaatgtttctgcagcttgtatcatggcggcacttgctactgtaaagagagaggtaaataccaagacttgcgatattgttgcaacaggcatacaatttggatttttgggttgcctgagtactgtatctacgttcattgccgagtttaatgcaatgagagaaagtaaatacccctggagagcatacatctacgccacagtcaccatatgcacctcattttgtttagggaccctgatatattctgtacctgtttgggcaaagggagacaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRCB

Protein Analysis

455

Amino Acids

49.54

Weight (kDa)

6.4

Isoelectric Point (pI)

41.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 704
AccI GTMKAC 1 cut(s) 350
AciI CCGC 2 cut(s) 567, 1124
AclWI GGATC 2 cut(s) 192, 278
AfaI GTAC 6 cut(s) 17, 209, 370, 1087, 1216, 1341
AgsI TTSAA 4 cut(s) 149, 229, 254, 683
AjiI CACGTC 1 cut(s) 1043
AjnI CCWGG 2 cut(s) 636, 1268
AluBI AGCT 6 cut(s) 191, 796, 843, 905, 1028, 1112
AluI AGCT 6 cut(s) 191, 796, 843, 905, 1028, 1112
Alw21I GWGCWC 2 cut(s) 121, 193
Alw26I GTCTC 3 cut(s) 722, 959, 1353
AlwI GGATC 2 cut(s) 192, 278
AoxI GGCC 2 cut(s) 475, 697
ApeKI GCWGC 6 cut(s) 746, 793, 796, 954, 957, 1109
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 3 cut(s) 476, 995, 1323
AsuC2I CCSGG 1 cut(s) 480
AsuHPI GGTGA 1 cut(s) 1288
AsuNHI GCTAGC 1 cut(s) 901
AvaII GGWCC 2 cut(s) 995, 1323
BanII GRGCYC 1 cut(s) 193
BbsI GAAGAC 1 cut(s) 147
Bbv12I GWGCWC 2 cut(s) 121, 193
BbvI GCAGC 6 cut(s) 733, 783, 805, 966, 969, 1121
BccI CCATC 2 cut(s) 550, 764
BcgI CGANNNNNNTGC 4 cut(s) 1157, 1191, 1226, 1260
BciT130I CCWGG 2 cut(s) 638, 1270
BcnI CCSGG 1 cut(s) 480
BcoDI GTCTC 3 cut(s) 722, 959, 1353
BfaI CTAG 5 cut(s) 419, 437, 834, 902, 1001
BfmI CTRYAG 2 cut(s) 240, 1107
BfoI RGCGCY 1 cut(s) 100
BfuAI ACCTGC 1 cut(s) 704
BisI GCNGC 7 cut(s) 747, 794, 797, 955, 958, 1110, 1125
BlsI GCNGC 7 cut(s) 748, 795, 798, 956, 959, 1111, 1126
BmcAI AGTACT 1 cut(s) 1216
Bme1390I CCNGG 3 cut(s) 480, 638, 1270
Bme18I GGWCC 2 cut(s) 995, 1323
BmgBI CACGTC 1 cut(s) 1043
BmgT120I GGNCC 3 cut(s) 476, 995, 1323
BmiI GGNNCC 5 cut(s) 478, 668, 1077, 1324, 1325
BmrFI CCNGG 3 cut(s) 480, 638, 1270
BmsI GCATC 2 cut(s) 302, 346
BmtI GCTAGC 1 cut(s) 905
BpiI GAAGAC 1 cut(s) 147
BpmI CTGGAG 2 cut(s) 865, 1291
BpuEI CTTGAG 2 cut(s) 114, 845
BpuMI CCSGG 1 cut(s) 480
Bsa29I ATCGAT 1 cut(s) 60
BsaI GGTCTC 1 cut(s) 722
BsaJI CCNNGG 4 cut(s) 309, 478, 637, 1268
BsaXI ACNNNNNCTCC 4 cut(s) 907, 937, 996, 1026
Bse1I ACTGG 1 cut(s) 78
Bse3DI GCAATG 2 cut(s) 1230, 1254
BseBI CCWGG 2 cut(s) 638, 1270
BseCI ATCGAT 1 cut(s) 60
BseDI CCNNGG 4 cut(s) 309, 478, 637, 1268
BseGI GGATG 3 cut(s) 121, 293, 776
BseMI GCAATG 2 cut(s) 1230, 1254
BseMII CTCAG 3 cut(s) 32, 677, 1202
BseNI ACTGG 1 cut(s) 78
BseXI GCAGC 6 cut(s) 733, 783, 805, 966, 969, 1121
BshFI GGCC 2 cut(s) 477, 699
BshVI ATCGAT 1 cut(s) 60
BsiHKAI GWGCWC 2 cut(s) 121, 193
BsiSI CCGG 1 cut(s) 480
BslFI GGGAC 2 cut(s) 37, 1336
BsmAI GTCTC 3 cut(s) 722, 959, 1353
BsmFI GGGAC 2 cut(s) 37, 1336
BsmI GAATGC 1 cut(s) 432
BsnI GGCC 2 cut(s) 477, 699
Bso31I GGTCTC 1 cut(s) 722
Bsp1286I GDGCHC 2 cut(s) 121, 193
Bsp143I GATC 3 cut(s) 184, 283, 523
BspACI CCGC 2 cut(s) 567, 1124
BspANI GGCC 2 cut(s) 477, 699
BspCNI CTCAG 3 cut(s) 33, 678, 1203
BspDI ATCGAT 1 cut(s) 60
BspHI TCATGA 1 cut(s) 280
BspLI GGNNCC 5 cut(s) 478, 668, 1077, 1324, 1325
BspMAI CTGCAG 2 cut(s) 244, 1111
BspMI ACCTGC 1 cut(s) 704
BspOI GCTAGC 1 cut(s) 905
BspPI GGATC 2 cut(s) 192, 278
BspQI GCTCTTC 1 cut(s) 198
BspTNI GGTCTC 1 cut(s) 722
BsrDI GCAATG 2 cut(s) 1230, 1254
BsrI ACTGG 1 cut(s) 78
BssECI CCNNGG 4 cut(s) 309, 478, 637, 1268
BssMI GATC 3 cut(s) 184, 283, 523
Bst2UI CCWGG 2 cut(s) 638, 1270
Bst4CI ACNGT 6 cut(s) 20, 212, 313, 1138, 1219, 1294
Bst6I CTCTTC 1 cut(s) 198
BstAPI GCANNNNNTGC 1 cut(s) 299
BstC8I GCNNGC 2 cut(s) 903, 985
BstDEI CTNAG 4 cut(s) 41, 686, 1024, 1211
BstDSI CCRYGG 1 cut(s) 309
BstEII GGTNACC 1 cut(s) 632
BstF5I GGATG 3 cut(s) 121, 293, 776
BstH2I RGCGCY 1 cut(s) 100
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 3 cut(s) 187, 286, 526
BstMAI GTCTC 3 cut(s) 722, 959, 1353
BstMBI GATC 3 cut(s) 184, 283, 523
BstMWI GCNNNNNNNGC 3 cut(s) 299, 881, 1130
BstNI CCWGG 2 cut(s) 638, 1270
BstPI GGTNACC 1 cut(s) 632
BstSCI CCNGG 3 cut(s) 478, 636, 1268
BstSFI CTRYAG 2 cut(s) 240, 1107
BstV1I GCAGC 6 cut(s) 733, 783, 805, 966, 969, 1121
BstV2I GAAGAC 1 cut(s) 147
Bsu15I ATCGAT 1 cut(s) 60
BsuRI GGCC 2 cut(s) 477, 699
BsuTUI ATCGAT 1 cut(s) 60
BtgI CCRYGG 1 cut(s) 309
BtrI CACGTC 1 cut(s) 1043
BtsCI GGATG 3 cut(s) 121, 293, 776
BtsI GCAGTG 2 cut(s) 891, 967
BtsIMutI CAGTG 4 cut(s) 25, 217, 891, 967
BveI ACCTGC 1 cut(s) 704
Cac8I GCNNGC 2 cut(s) 903, 985
CciI TCATGA 1 cut(s) 280
CfoI GCGC 1 cut(s) 99
Cfr13I GGNCC 3 cut(s) 476, 995, 1323
ClaI ATCGAT 1 cut(s) 60
CseI GACGC 1 cut(s) 854
Csp6I GTAC 6 cut(s) 16, 208, 369, 1086, 1215, 1340
CviAII CATG 4 cut(s) 281, 299, 405, 1120
CviQI GTAC 6 cut(s) 16, 208, 369, 1086, 1215, 1340
DdeI CTNAG 4 cut(s) 41, 686, 1024, 1211
DpnI GATC 3 cut(s) 186, 285, 525
DpnII GATC 3 cut(s) 184, 283, 523
DraI TTTAAA 1 cut(s) 580
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Ecl136II GAGCTC 1 cut(s) 191
Eco24I GRGCYC 1 cut(s) 193
Eco31I GGTCTC 1 cut(s) 722
Eco32I GATATC 1 cut(s) 455
Eco47I GGWCC 2 cut(s) 995, 1323
Eco53kI GAGCTC 1 cut(s) 191
Eco91I GGTNACC 1 cut(s) 632
EcoICRI GAGCTC 1 cut(s) 191
EcoO109I RGGNCCY 1 cut(s) 1323
EcoO65I GGTNACC 1 cut(s) 632
EcoRII CCWGG 2 cut(s) 636, 1268
EcoRV GATATC 1 cut(s) 455
EcoT38I GRGCYC 1 cut(s) 193
FaeI CATG 4 cut(s) 284, 302, 408, 1123
FalI AAGNNNNNCTT 2 cut(s) 854, 886
FaqI GGGAC 2 cut(s) 37, 1336
FatI CATG 4 cut(s) 280, 298, 404, 1119
FauNDI CATATG 1 cut(s) 1301
FblI GTMKAC 1 cut(s) 350
Fnu4HI GCNGC 7 cut(s) 747, 794, 797, 955, 958, 1110, 1125
FokI GGATG 3 cut(s) 108, 280, 763
FriOI GRGCYC 1 cut(s) 193
Fsp4HI GCNGC 7 cut(s) 747, 794, 797, 955, 958, 1110, 1125
FspBI CTAG 5 cut(s) 419, 437, 834, 902, 1001
GlaI GCGC 1 cut(s) 98
GluI GCNGC 7 cut(s) 747, 794, 797, 955, 958, 1110, 1125
GsuI CTGGAG 2 cut(s) 865, 1291
HaeII RGCGCY 1 cut(s) 100
HaeIII GGCC 2 cut(s) 477, 699
HapII CCGG 1 cut(s) 480
HgaI GACGC 1 cut(s) 854
HhaI GCGC 1 cut(s) 99
Hin1II CATG 4 cut(s) 284, 302, 408, 1123
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HincII GTYRAC 1 cut(s) 853
HindII GTYRAC 1 cut(s) 853
HinfI GANTC 4 cut(s) 32, 270, 412, 1005
HpaII CCGG 1 cut(s) 480
HphI GGTGA 1 cut(s) 1288
Hpy166II GTNNAC 2 cut(s) 351, 853
Hpy188I TCNGA 3 cut(s) 37, 166, 604
Hpy188III TCNNGA 3 cut(s) 281, 553, 834
Hpy8I GTNNAC 2 cut(s) 351, 853
HpyAV CCTTC 3 cut(s) 433, 540, 689
HpyCH4III ACNGT 6 cut(s) 20, 212, 313, 1138, 1219, 1294
HpyCH4IV ACGT 2 cut(s) 1042, 1226
HpyF10VI GCNNNNNNNGC 3 cut(s) 299, 881, 1130
HpyF3I CTNAG 4 cut(s) 41, 686, 1024, 1211
HpySE526I ACGT 2 cut(s) 1042, 1226
Hsp92II CATG 4 cut(s) 284, 302, 408, 1123
HspAI GCGC 1 cut(s) 97
KflI GGGWCCC 1 cut(s) 1323
Kzo9I GATC 3 cut(s) 184, 283, 523
LguI GCTCTTC 1 cut(s) 198
Lsp1109I GCAGC 6 cut(s) 733, 783, 805, 966, 969, 1121
LweI GCATC 2 cut(s) 302, 346
MaeI CTAG 5 cut(s) 419, 437, 834, 902, 1001
MaeII ACGT 2 cut(s) 1042, 1226
MaeIII GTNAC 7 cut(s) 64, 493, 500, 632, 646, 866, 1294
MalI GATC 3 cut(s) 186, 285, 525
MboI GATC 3 cut(s) 184, 283, 523
MboII GAAGA 4 cut(s) 75, 152, 185, 518
MfeI CAATTG 2 cut(s) 254, 615
MhlI GDGCHC 2 cut(s) 121, 193
MluCI AATT 8 cut(s) 254, 386, 467, 510, 615, 1092, 1190, 1363
MlyI GAGTC 3 cut(s) 26, 406, 1014
MmeI TCCRAC 2 cut(s) 372, 644
MseI TTAA 9 cut(s) 89, 104, 446, 579, 728, 948, 1067, 1242, 1366
MslI CAYNNNNRTG 2 cut(s) 91, 781
MspA1I CMGCKG 1 cut(s) 796
MspI CCGG 1 cut(s) 480
MspR9I CCNGG 3 cut(s) 480, 638, 1270
MunI CAATTG 2 cut(s) 254, 615
Mva1269I GAATGC 1 cut(s) 432
MvaI CCWGG 2 cut(s) 638, 1270
MwoI GCNNNNNNNGC 3 cut(s) 299, 881, 1130
NciI CCSGG 1 cut(s) 480
NdeI CATATG 1 cut(s) 1301
NdeII GATC 3 cut(s) 184, 283, 523
NheI GCTAGC 1 cut(s) 901
NlaIII CATG 4 cut(s) 284, 302, 408, 1123
NlaIV GGNNCC 5 cut(s) 478, 668, 1077, 1324, 1325
NmeAIII GCCGAG 1 cut(s) 1261
NmuCI GTSAC 5 cut(s) 64, 493, 500, 866, 1294
PagI TCATGA 1 cut(s) 280
PciSI GCTCTTC 1 cut(s) 198
PctI GAATGC 1 cut(s) 432
PfeI GAWTC 1 cut(s) 270
PkrI GCNGC 7 cut(s) 748, 795, 798, 956, 959, 1111, 1126
PleI GAGTC 3 cut(s) 26, 406, 1013
PpsI GAGTC 3 cut(s) 26, 406, 1013
PpuMI RGGWCCY 1 cut(s) 1323
Psp124BI GAGCTC 1 cut(s) 193
Psp5II RGGWCCY 1 cut(s) 1323
Psp6I CCWGG 2 cut(s) 636, 1268
PspEI GGTNACC 1 cut(s) 632
PspGI CCWGG 2 cut(s) 636, 1268
PspN4I GGNNCC 5 cut(s) 478, 668, 1077, 1324, 1325
PspPI GGNCC 3 cut(s) 476, 995, 1323
PspPPI RGGWCCY 1 cut(s) 1323
PstI CTGCAG 2 cut(s) 244, 1111
PvuII CAGCTG 1 cut(s) 796
RsaI GTAC 6 cut(s) 17, 209, 370, 1087, 1216, 1341
RsaNI GTAC 6 cut(s) 16, 208, 369, 1086, 1215, 1340
RseI CAYNNNNRTG 2 cut(s) 91, 781
SacI GAGCTC 1 cut(s) 193
SapI GCTCTTC 1 cut(s) 198
SaqAI TTAA 9 cut(s) 89, 104, 446, 579, 728, 948, 1067, 1242, 1366
SatI GCNGC 7 cut(s) 747, 794, 797, 955, 958, 1110, 1125
Sau3AI GATC 3 cut(s) 184, 283, 523
Sau96I GGNCC 3 cut(s) 476, 995, 1323
ScaI AGTACT 1 cut(s) 1216
SchI GAGTC 3 cut(s) 26, 406, 1014
ScrFI CCNGG 3 cut(s) 480, 638, 1270
SduI GDGCHC 2 cut(s) 121, 193
SfaNI GCATC 2 cut(s) 302, 346
SfcI CTRYAG 2 cut(s) 240, 1107
SinI GGWCC 2 cut(s) 995, 1323
SmiMI CAYNNNNRTG 2 cut(s) 91, 781
SmlI CTYRAG 2 cut(s) 129, 860
SmoI CTYRAG 2 cut(s) 129, 860
Sse9I AATT 8 cut(s) 254, 386, 467, 510, 615, 1092, 1190, 1363
SsiI CCGC 2 cut(s) 567, 1124
SspI AATATT 1 cut(s) 930
SspMI CTAG 5 cut(s) 419, 437, 834, 902, 1001
SstI GAGCTC 1 cut(s) 193
StyD4I CCNGG 3 cut(s) 478, 636, 1268
TaaI ACNGT 6 cut(s) 20, 212, 313, 1138, 1219, 1294
TaiI ACGT 2 cut(s) 1045, 1229
TaqI TCGA 4 cut(s) 60, 187, 693, 1030
TasI AATT 8 cut(s) 254, 386, 467, 510, 615, 1092, 1190, 1363
TatI WGTACW 3 cut(s) 15, 368, 1214
TauI GCSGC 1 cut(s) 1127
TfiI GAWTC 1 cut(s) 270
Tru1I TTAA 9 cut(s) 89, 104, 446, 579, 728, 948, 1067, 1242, 1366
Tru9I TTAA 9 cut(s) 89, 104, 446, 579, 728, 948, 1067, 1242, 1366
TscAI CASTG 4 cut(s) 25, 217, 891, 967
TseFI GTSAC 5 cut(s) 64, 493, 500, 866, 1294
TseI GCWGC 6 cut(s) 746, 793, 796, 954, 957, 1109
Tsp45I GTSAC 5 cut(s) 64, 493, 500, 866, 1294
TspDTI ATGAA 5 cut(s) 75, 99, 153, 393, 1219
TspRI CASTG 4 cut(s) 25, 217, 891, 967
VpaK11BI GGWCC 2 cut(s) 995, 1323
XbaI TCTAGA 1 cut(s) 833
XmiI GTMKAC 1 cut(s) 350
XspI CTAG 5 cut(s) 419, 437, 834, 902, 1001
ZrmI AGTACT 1 cut(s) 1216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.