Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001325

Physical Location & Seq

Genomic Coordinates Reverse (-)

4631347 .. 4635224

Gene Structure 3878 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1028200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

ATGGAGGAAGGGTACCGTGGGACTAATGACACTAAACCCAGACGAAGCGTATCCAATGATCGAACAAGCGGTGCCACTTCTTCATTAAGGAGGCGGTCTTTAAGTTTATCACATGTTCGGCCTTCTCAAATAGATGATGACAATGAAAGTGAATGTGTGTCAGAGGCAGGAGATATTGGCGATCGGGCTCTTCACAGCAATAGGCACAGTGAGATTGGCAGCGTCTGCCTGTTTCCTTCAGAGTATGTTCAACTGCAAACCTATGGATTATGGGGTCGTGACCCTGCAATTTCCCCTGTCACTCCCTTGCCAAAGGAAATCATATCTCCTCTTTCCACTGATGCGATCATATCCGAAGACAAAAAGCCAGAAAATACAACAAGGTTGCCAAAATTATTGGAATATGGTTCATGCATGACTCATTTAGCATTTTTTGGCATTCTTGGGGTCTTAACGAGATATCTTCTGCAAAAATTGTTTGGCCCTGGAGTTGTTGGTGTAACAAGCGACAAAACCATTCTCTACCTTGATCTTCCTTCTAATATGTACGATGATCGCCGAAGTTGGCTCTTTCTTGATGGGGTGTTTGGGTGTTGTTTTCAAAGAGATATATCCTATGTGTCAGATTATTTGGTCATCGGATTAACAACTGGTTACTTGGGAAGCCTTACAACTTTTAGTGGTTGGAACCAGAAAATGCTTGAACTCAGTGTTGAAGGACATTGGGTTTTTGCTCTGCTCGGCTTTTTGATAGGTTTGTTTCTTGCGGCCTACTCCATCATTTTTGGGGTAGAGACAGCAAAGGGTTTTAGGCAGATTCTTGAGAGAAGCTCAGTCTGTGGTATTACCAGCTCTAGAAGGAGGTGGAGGGTTGACAGCTACAAGCGTCACTTGGTAGCTTTAGTAGTGTTGTTGCTGATGCTAAGTTCTCTGTGGAGCATAGGTGGAGTACTGTTGAGAGAGGAATTTAACAGTAGCAGCAGCGAGGCGCAACTATGGTTGGGTTGCATAGTTGGACCTTTTGGTGTGTGGATCCGGTGGTTCTTAGCCCGGCTTAATGGATGTGGATTAGGAAAGACCGGGTTGTTGAAATGGGTTCCATTTGGTACTTTAATTGCCAATGTTTCTGCAGCTTGTGTAATGGCAGCCCTGTCTACTGTGAAGAAGGCAGTGAATACTAAGACTTGCGACATTGTTGCAACAGGCATACAATTTGGATTTTTGGGTTGCCTTAGTACTGTTTCTACCTTCATCGCTGAGTTCAACGCGATGAGAGAAAGCAAATACCCATGGAGAGCATACGCATATGCCACAGCTACGATATGCACCTCGTTTGGTTTGGGAATCCTGATATATTGTGTACCTGTTTGGACAAGGGCATACAAGTACATGCTCAGGCCATTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRCB

Protein Analysis

470

Amino Acids

52.08

Weight (kDa)

8.79

Isoelectric Point (pI)

50.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRCB	PF02537	142 - 264	7.4e-10	CrcB-like protein, Camphor Resistance (CrcB)
CRCB	PF02537	336 - 447	3.8e-15	CrcB-like protein, Camphor Resistance (CrcB)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41705 AT2G41705 AT2G41705 AT2G41705
fragaria_vesca	FvH4_2g13600 FvH4_2g13600 FvH4_2g26430 FvH4_2g26430 FvH4_2g26430
malus_domestica	MD05G1028200.v1.1 MD05G1028300.v1.1 MD05G1028400.v1.1 MD08G1121700.v1.1 MD08G1168900.v1.1 MD08G1170900.v1.1 MD15G1354200.v1.1 MD15G1354300.v1.1 MD15G1354500.v1.1 MD16G1151600.v1.1
prunus_persica	Prupe.1G502900_v2.0.a1 Prupe.1G502900_v2.0.a1 Prupe.1G502900_v2.0.a1 Prupe.1G502900_v2.0.a1 Prupe.1G502900_v2.0.a1 Prupe.1G502900_v2.0.a1 Prupe.1G502900_v2.0.a1 Prupe.1G502900_v2.0.a1 Prupe.1G502900_v2.0.a1
pyrus_communis	pycom08g14420 pycom15g31750
rosa_chinensis	RchiOBHm_Chr6g0275211 RchiOBHm_Chr6g0295111
rosa_laevigata	RLG00000011820 RLG00000013487
rosa_multiflora	Rmu_sc0002096.1_g000021 Rmu_ssc0000041.1_g000022
rosa_roxburghii	Rroxscaffold_7G00172720 Rroxscaffold_7G00193550
rosa_rugosa	Rorug06G0090200.1 Rorug06G0249200 Rorug06G0249200 Rorug06G0249200 Rorug06G0249200 Rorug06G0249200
rosa_samantha	Rh6AG203500 Rh6AG362200 Rh6BG206400 Rh6BG369900 Rh6CG208900 Rh6CG376500 Rh6DG199000 Rh6DG363000
rosa_wichuraiana	Rw6G017660 Rw6G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	12
AccB1I	GGYRCC	2 cut(s)	12, 71
AccI	GTMKAC	1 cut(s)	1154
AccII	CGCG	1 cut(s)	1268
AciI	CCGC	3 cut(s)	69, 94, 767
AclWI	GGATC	2 cut(s)	1027, 1040
AcsI	RAATTY	1 cut(s)	965
AcuI	CTGAAG	1 cut(s)	222
AfaI	GTAC	7 cut(s)	14, 548, 951, 1108, 1237, 1362, 1388
AflIII	ACRYGT	1 cut(s)	112
AgsI	TTSAA	6 cut(s)	251, 602, 704, 716, 1090, 1264
AjnI	CCWGG	1 cut(s)	484
AluBI	AGCT	6 cut(s)	831, 852, 879, 899, 1133, 1316
AluI	AGCT	6 cut(s)	831, 852, 879, 899, 1133, 1316
Alw26I	GTCTC	1 cut(s)	788
AlwI	GGATC	2 cut(s)	1027, 1040
AlwNI	CAGNNNCTG	1 cut(s)	225
AoxI	GGCC	4 cut(s)	119, 481, 768, 1397
ApeKI	GCWGC	5 cut(s)	219, 978, 981, 1130, 1145
ApoI	RAATTY	1 cut(s)	965
Asp718I	GGTACC	1 cut(s)	12
AspLEI	GCGC	1 cut(s)	991
AspS9I	GGNCC	2 cut(s)	482, 1016
AsuC2I	CCSGG	2 cut(s)	1051, 1081
AvaII	GGWCC	1 cut(s)	1016
BamHI	GGATCC	1 cut(s)	1032
BanI	GGYRCC	2 cut(s)	12, 71
BanII	GRGCYC	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	363
BbvI	GCAGC	5 cut(s)	231, 990, 993, 1142, 1157
BccI	CCATC	2 cut(s)	572, 785
BcgI	CGANNNNNNTGC	2 cut(s)	1178, 1212
BciT130I	CCWGG	1 cut(s)	486
BciVI	GTATCC	1 cut(s)	61
BcnI	CCSGG	2 cut(s)	1051, 1081
BcoDI	GTCTC	1 cut(s)	788
BfaI	CTAG	1 cut(s)	855
BfmI	CTRYAG	1 cut(s)	1128
BfuI	GTATCC	1 cut(s)	61
BisI	GCNGC	6 cut(s)	220, 768, 979, 982, 1131, 1146
BlsI	GCNGC	6 cut(s)	221, 769, 980, 983, 1132, 1147
BmcAI	AGTACT	2 cut(s)	951, 1237
Bme1390I	CCNGG	3 cut(s)	486, 1051, 1081
Bme18I	GGWCC	1 cut(s)	1016
BmgT120I	GGNCC	2 cut(s)	482, 1016
BmiI	GGNNCC	5 cut(s)	14, 73, 689, 1034, 1098
BmrFI	CCNGG	3 cut(s)	486, 1051, 1081
BmsI	GCATC	2 cut(s)	331, 909
BpiI	GAAGAC	1 cut(s)	363
BplI	GAGNNNNNCTC	2 cut(s)	815, 847
BpmI	CTGGAG	1 cut(s)	507
Bpu10I	CCTNAGC	1 cut(s)	1394
BpuEI	CTTGAG	1 cut(s)	842
BpuMI	CCSGG	2 cut(s)	1051, 1081
BsaJI	CCNNGG	3 cut(s)	16, 484, 1289
BsaWI	WCCGGW	1 cut(s)	1035
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 928, 958
Bse1I	ACTGG	1 cut(s)	655
BseBI	CCWGG	1 cut(s)	486
BseDI	CCNNGG	3 cut(s)	16, 484, 1289
BseGI	GGATG	1 cut(s)	1067
BseMII	CTCAG	4 cut(s)	721, 846, 1248, 1408
BseNI	ACTGG	1 cut(s)	655
BseRI	GAGGAG	1 cut(s)	318
BseXI	GCAGC	5 cut(s)	231, 990, 993, 1142, 1157
Bsh1236I	CGCG	1 cut(s)	1268
Bsh1285I	CGRYCG	1 cut(s)	184
BshFI	GGCC	4 cut(s)	121, 483, 770, 1399
BshNI	GGYRCC	2 cut(s)	12, 71
BsiEI	CGRYCG	1 cut(s)	184
BsiSI	CCGG	3 cut(s)	1036, 1051, 1080
BslFI	GGGAC	1 cut(s)	34
BsmAI	GTCTC	1 cut(s)	788
BsmFI	GGGAC	1 cut(s)	34
BsmI	GAATGC	1 cut(s)	438
BsnI	GGCC	4 cut(s)	121, 483, 770, 1399
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp143I	GATC	6 cut(s)	58, 181, 345, 529, 553, 1032
Bsp19I	CCATGG	1 cut(s)	1289
BspACI	CCGC	3 cut(s)	69, 94, 767
BspANI	GGCC	4 cut(s)	121, 483, 770, 1399
BspCNI	CTCAG	4 cut(s)	720, 845, 1249, 1407
BspFNI	CGCG	1 cut(s)	1268
BspLI	GGNNCC	5 cut(s)	14, 73, 689, 1034, 1098
BspMAI	CTGCAG	1 cut(s)	1132
BspPI	GGATC	2 cut(s)	1027, 1040
BspQI	GCTCTTC	1 cut(s)	195
BspT107I	GGYRCC	2 cut(s)	12, 71
BsrI	ACTGG	1 cut(s)	655
BssECI	CCNNGG	3 cut(s)	16, 484, 1289
BssMI	GATC	6 cut(s)	58, 181, 345, 529, 553, 1032
BssT1I	CCWWGG	1 cut(s)	1289
Bst2UI	CCWGG	1 cut(s)	486
Bst4CI	ACNGT	6 cut(s)	17, 209, 954, 974, 1159, 1240
Bst6I	CTCTTC	1 cut(s)	195
BstAPI	GCANNNNNTGC	1 cut(s)	225
BstDEI	CTNAG	8 cut(s)	707, 832, 923, 1045, 1179, 1232, 1257, 1394
BstDSI	CCRYGG	2 cut(s)	16, 1289
BstF5I	GGATG	1 cut(s)	1067
BstFNI	CGCG	1 cut(s)	1268
BstHHI	GCGC	1 cut(s)	991
BstKTI	GATC	6 cut(s)	61, 184, 348, 532, 556, 1035
BstMAI	GTCTC	1 cut(s)	788
BstMBI	GATC	6 cut(s)	58, 181, 345, 529, 553, 1032
BstMCI	CGRYCG	1 cut(s)	184
BstMWI	GCNNNNNNNGC	1 cut(s)	225
BstNI	CCWGG	1 cut(s)	486
BstNSI	RCATGY	2 cut(s)	116, 1393
BstSCI	CCNGG	3 cut(s)	484, 1049, 1079
BstSFI	CTRYAG	1 cut(s)	1128
BstUI	CGCG	1 cut(s)	1268
BstV1I	GCAGC	5 cut(s)	231, 990, 993, 1142, 1157
BstV2I	GAAGAC	1 cut(s)	363
BstX2I	RGATCY	1 cut(s)	1032
BstYI	RGATCY	1 cut(s)	1032
BsuI	GTATCC	1 cut(s)	61
BsuRI	GGCC	4 cut(s)	121, 483, 770, 1399
BtgI	CCRYGG	2 cut(s)	16, 1289
BtgZI	GCGATG	2 cut(s)	1237, 1283
BtsCI	GGATG	1 cut(s)	1067
BtsI	GCAGTG	1 cut(s)	1176
BtsIMutI	CAGTG	4 cut(s)	214, 336, 715, 1176
CaiI	CAGNNNCTG	1 cut(s)	225
CfoI	GCGC	1 cut(s)	991
Cfr13I	GGNCC	2 cut(s)	482, 1016
CseI	GACGC	2 cut(s)	211, 875
Csp6I	GTAC	7 cut(s)	13, 547, 950, 1107, 1236, 1361, 1387
CviAII	CATG	5 cut(s)	113, 411, 415, 1290, 1390
CviQI	GTAC	7 cut(s)	13, 547, 950, 1107, 1236, 1361, 1387
DdeI	CTNAG	8 cut(s)	707, 832, 923, 1045, 1179, 1232, 1257, 1394
DpnI	GATC	6 cut(s)	60, 183, 347, 531, 555, 1034
DpnII	GATC	6 cut(s)	58, 181, 345, 529, 553, 1032
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco130I	CCWWGG	1 cut(s)	1289
Eco24I	GRGCYC	1 cut(s)	190
Eco32I	GATATC	1 cut(s)	461
Eco47I	GGWCC	1 cut(s)	1016
Eco57I	CTGAAG	1 cut(s)	222
EcoRII	CCWGG	1 cut(s)	484
EcoRV	GATATC	1 cut(s)	461
EcoT14I	CCWWGG	1 cut(s)	1289
EcoT22I	ATGCAT	1 cut(s)	416
EcoT38I	GRGCYC	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	1289
FaeI	CATG	5 cut(s)	116, 414, 418, 1293, 1393
FalI	AAGNNNNNCTT	2 cut(s)	875, 907
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	5 cut(s)	112, 410, 414, 1289, 1389
FauNDI	CATATG	1 cut(s)	1306
FblI	GTMKAC	1 cut(s)	1154
Fnu4HI	GCNGC	6 cut(s)	220, 768, 979, 982, 1131, 1146
FokI	GGATG	1 cut(s)	1074
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	6 cut(s)	220, 768, 979, 982, 1131, 1146
FspBI	CTAG	1 cut(s)	855
GlaI	GCGC	1 cut(s)	990
GluI	GCNGC	6 cut(s)	220, 768, 979, 982, 1131, 1146
GsuI	CTGGAG	1 cut(s)	507
HaeIII	GGCC	4 cut(s)	121, 483, 770, 1399
HapII	CCGG	3 cut(s)	1036, 1051, 1080
HgaI	GACGC	2 cut(s)	211, 875
HhaI	GCGC	1 cut(s)	991
Hin1II	CATG	5 cut(s)	116, 414, 418, 1293, 1393
Hin6I	GCGC	1 cut(s)	989
HinP1I	GCGC	1 cut(s)	989
HincII	GTYRAC	1 cut(s)	874
HindII	GTYRAC	1 cut(s)	874
HinfI	GANTC	3 cut(s)	418, 817, 1344
HpaII	CCGG	3 cut(s)	1036, 1051, 1080
Hpy166II	GTNNAC	3 cut(s)	874, 1155, 1361
Hpy188I	TCNGA	5 cut(s)	163, 241, 355, 625, 641
Hpy188III	TCNNGA	5 cut(s)	278, 575, 821, 855, 1348
Hpy8I	GTNNAC	3 cut(s)	874, 1155, 1361
HpyAV	CCTTC	7 cut(s)	132, 246, 546, 710, 852, 1159, 1258
HpyCH4III	ACNGT	6 cut(s)	17, 209, 954, 974, 1159, 1240
HpyCH4V	TGCA	8 cut(s)	256, 287, 414, 469, 1008, 1130, 1199, 1326
HpyF10VI	GCNNNNNNNGC	1 cut(s)	225
HpyF3I	CTNAG	8 cut(s)	707, 832, 923, 1045, 1179, 1232, 1257, 1394
Hsp92II	CATG	5 cut(s)	116, 414, 418, 1293, 1393
HspAI	GCGC	1 cut(s)	989
KpnI	GGTACC	1 cut(s)	16
Kzo9I	GATC	6 cut(s)	58, 181, 345, 529, 553, 1032
LguI	GCTCTTC	1 cut(s)	195
LmnI	GCTCC	1 cut(s)	936
Lsp1109I	GCAGC	5 cut(s)	231, 990, 993, 1142, 1157
LweI	GCATC	2 cut(s)	331, 909
MaeI	CTAG	1 cut(s)	855
MaeIII	GTNAC	5 cut(s)	278, 298, 499, 653, 887
MalI	GATC	6 cut(s)	60, 183, 347, 531, 555, 1034
MboI	GATC	6 cut(s)	58, 181, 345, 529, 553, 1032
MboII	GAAGA	6 cut(s)	72, 182, 368, 455, 524, 1174
MflI	RGATCY	1 cut(s)	1032
MhlI	GDGCHC	1 cut(s)	190
MluCI	AATT	6 cut(s)	288, 392, 473, 965, 1113, 1211
MlyI	GAGTC	1 cut(s)	412
MmeI	TCCRAC	2 cut(s)	665, 994
MnlI	CCTC	8 cut(s)	84, 157, 339, 855, 861, 955, 979, 1339
Mph1103I	ATGCAT	1 cut(s)	416
MseI	TTAA	7 cut(s)	86, 101, 452, 644, 969, 1056, 1112
MspI	CCGG	3 cut(s)	1036, 1051, 1080
MspR9I	CCNGG	3 cut(s)	486, 1051, 1081
Mva1269I	GAATGC	1 cut(s)	438
MvaI	CCWGG	1 cut(s)	486
MvnI	CGCG	1 cut(s)	1268
MwoI	GCNNNNNNNGC	1 cut(s)	225
NciI	CCSGG	2 cut(s)	1051, 1081
NcoI	CCATGG	1 cut(s)	1289
NdeI	CATATG	1 cut(s)	1306
NdeII	GATC	6 cut(s)	58, 181, 345, 529, 553, 1032
NlaIII	CATG	5 cut(s)	116, 414, 418, 1293, 1393
NlaIV	GGNNCC	5 cut(s)	14, 73, 689, 1034, 1098
NmeAIII	GCCGAG	1 cut(s)	720
NmuCI	GTSAC	3 cut(s)	278, 298, 887
NsiI	ATGCAT	1 cut(s)	416
NspI	RCATGY	2 cut(s)	116, 1393
PciI	ACATGT	1 cut(s)	112
PciSI	GCTCTTC	1 cut(s)	195
PctI	GAATGC	1 cut(s)	438
PfeI	GAWTC	2 cut(s)	817, 1344
PkrI	GCNGC	6 cut(s)	221, 769, 980, 983, 1132, 1147
Ple19I	CGATCG	1 cut(s)	184
PleI	GAGTC	1 cut(s)	412
PpsI	GAGTC	1 cut(s)	412
PscI	ACATGT	1 cut(s)	112
Psp6I	CCWGG	1 cut(s)	484
PspGI	CCWGG	1 cut(s)	484
PspN4I	GGNNCC	5 cut(s)	14, 73, 689, 1034, 1098
PspPI	GGNCC	2 cut(s)	482, 1016
PstI	CTGCAG	1 cut(s)	1132
PstNI	CAGNNNCTG	1 cut(s)	225
PsuI	RGATCY	1 cut(s)	1032
PvuI	CGATCG	1 cut(s)	184
RsaI	GTAC	7 cut(s)	14, 548, 951, 1108, 1237, 1362, 1388
RsaNI	GTAC	7 cut(s)	13, 547, 950, 1107, 1236, 1361, 1387
SapI	GCTCTTC	1 cut(s)	195
SaqAI	TTAA	7 cut(s)	86, 101, 452, 644, 969, 1056, 1112
SatI	GCNGC	6 cut(s)	220, 768, 979, 982, 1131, 1146
Sau3AI	GATC	6 cut(s)	58, 181, 345, 529, 553, 1032
Sau96I	GGNCC	2 cut(s)	482, 1016
ScaI	AGTACT	2 cut(s)	951, 1237
SchI	GAGTC	1 cut(s)	412
ScrFI	CCNGG	3 cut(s)	486, 1051, 1081
SduI	GDGCHC	1 cut(s)	190
SfaNI	GCATC	2 cut(s)	331, 909
SfcI	CTRYAG	1 cut(s)	1128
SinI	GGWCC	1 cut(s)	1016
SmlI	CTYRAG	1 cut(s)	821
SmoI	CTYRAG	1 cut(s)	821
Sse9I	AATT	6 cut(s)	288, 392, 473, 965, 1113, 1211
SsiI	CCGC	3 cut(s)	69, 94, 767
SspMI	CTAG	1 cut(s)	855
StyD4I	CCNGG	3 cut(s)	484, 1049, 1079
StyI	CCWWGG	1 cut(s)	1289
TaaI	ACNGT	6 cut(s)	17, 209, 954, 974, 1159, 1240
TaqI	TCGA	1 cut(s)	61
TasI	AATT	6 cut(s)	288, 392, 473, 965, 1113, 1211
TatI	WGTACW	3 cut(s)	949, 1235, 1386
TauI	GCSGC	1 cut(s)	770
TfiI	GAWTC	2 cut(s)	817, 1344
Tru1I	TTAA	7 cut(s)	86, 101, 452, 644, 969, 1056, 1112
Tru9I	TTAA	7 cut(s)	86, 101, 452, 644, 969, 1056, 1112
TscAI	CASTG	4 cut(s)	214, 343, 715, 1176
TseFI	GTSAC	3 cut(s)	278, 298, 887
TseI	GCWGC	5 cut(s)	219, 978, 981, 1130, 1145
Tsp45I	GTSAC	3 cut(s)	278, 298, 887
TspDTI	ATGAA	4 cut(s)	72, 159, 399, 1240
TspRI	CASTG	4 cut(s)	214, 343, 715, 1176
VpaK11BI	GGWCC	1 cut(s)	1016
XapI	RAATTY	1 cut(s)	965
XbaI	TCTAGA	1 cut(s)	854
XceI	RCATGY	2 cut(s)	116, 1393
XmiI	GTMKAC	1 cut(s)	1154
XspI	CTAG	1 cut(s)	855
ZrmI	AGTACT	2 cut(s)	951, 1237
Zsp2I	ATGCAT	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.