Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001325

Physical Location & Seq

Genomic Coordinates Forward (+)

59962168 .. 59967851

Gene Structure 5684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG369900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGTCTATTGATCGGTACAGCAAGAAAGTCAAACATGCTGAGTTTGTTTTGTCAGATCATCCTAATAACTTCAAATTATTGTTTCTTCATATGCAGGAAAATACAAATAAGTTGCTGTCAAAGTGGATGGAGTATGGTTCATGTATGACACATTTAGCCGTTTTTGGTATTCTTGGGGTCTTGACAAGGTATCTACTGCAAAAATTGTTTGGCCCTGGAGGTGCTGGTGTGACAAGTGACCAAACAATTCTTTACCTTGATCTTCCTTCTAATATGGTTGGTTCTTTCTTGATGGGATGGTGGGGTGTTGTTTTCAAAGCAGATATATCCTATGTGTCAGATTTTTTGGCCATTGGATTGTCAACCGGTTATCTGGGAAGCCTTACTACTTTCAGTGGTTGGAATCAGAAAATGCTTGAACTCAGTGTTCAAGGCCATTGGGCTTTTGCTGTGCTTGGCAATTTAATAGGTTTATTTCTTGCGGCATACTCTATTATTTTTGGGATAGAGACATCTAAGGGTTTCAGGCAGCTTCTTAAAAGGTGTTCAGGGTCTGACATTGCCATCTCTAGAAAGACCTGGAGGGTTGACAGCTACAAGCGCCACTTGGCAGTTTGGGCAGTGTTGCTGGTGATGCTAGGTTGTCTATGGAGTGTGAGTGGAATCTTGGTGAAGGAGGACTTTAGAAATGACAGCAGTGAGACACATCTATGGTTGGCCTGCATCATTGGACCTGTAGGTGTGTGGATCAGGTGGTTCTTAGCTCGACTCAATGGACGTGGATTAGGAAAGACAGGGTTGTTAAAATGGCTTCCGTTTGGTACTCTAATTGCAAATGTTTCTGCAGCTTGTATCATGGCAGCCCTTGCTACTGTGGAGAAAGAGGTGAATACCAAGACTTGCAATATCATTGTAACCGGAGTACAATTTGGTTTTTTGGGTTGCCTGAGTACTGTTTCTACCTTCATTTCTGAATTCAATGCAATGAGAGAAAGTAAACACCCCTGGAGAGCATATGCATACGTCATGGTTACGATATGCGCCTCGTTTTGTTTGGGGACCTTAATATATTCTCTCCCAGTTTGGGCAAAGGGATACAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRCB

Protein Analysis

367

Amino Acids

40.84

Weight (kDa)

9.33

Isoelectric Point (pI)

27.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRCB	PF02537	52 - 168	2.5e-14	CrcB-like protein, Camphor Resistance (CrcB)
CRCB	PF02537	239 - 352	6.9e-18	CrcB-like protein, Camphor Resistance (CrcB)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41705 AT2G41705 AT2G41705 AT2G41705
fragaria_vesca	FvH4_2g13600 FvH4_2g13600 FvH4_2g26430 FvH4_2g26430 FvH4_2g26430
malus_domestica	MD05G1028200.v1.1 MD05G1028300.v1.1 MD05G1028400.v1.1 MD08G1121700.v1.1 MD08G1168900.v1.1 MD08G1170900.v1.1 MD15G1354200.v1.1 MD15G1354300.v1.1 MD15G1354500.v1.1 MD16G1151600.v1.1
prunus_persica	Prupe.1G502900_v2.0.a1 Prupe.1G502900_v2.0.a1 Prupe.1G502900_v2.0.a1 Prupe.1G502900_v2.0.a1 Prupe.1G502900_v2.0.a1 Prupe.1G502900_v2.0.a1 Prupe.1G502900_v2.0.a1 Prupe.1G502900_v2.0.a1 Prupe.1G502900_v2.0.a1
pyrus_communis	pycom08g14420 pycom15g31750
rosa_chinensis	RchiOBHm_Chr6g0275211 RchiOBHm_Chr6g0295111
rosa_laevigata	RLG00000011820 RLG00000013487
rosa_multiflora	Rmu_sc0002096.1_g000021 Rmu_ssc0000041.1_g000022
rosa_roxburghii	Rroxscaffold_7G00172720 Rroxscaffold_7G00193550
rosa_rugosa	Rorug06G0090200.1 Rorug06G0249200 Rorug06G0249200 Rorug06G0249200 Rorug06G0249200 Rorug06G0249200
rosa_samantha	Rh6AG203500 Rh6AG362200 Rh6BG206400 Rh6BG369900 Rh6CG208900 Rh6CG376500 Rh6DG199000 Rh6DG363000
rosa_wichuraiana	Rw6G017660 Rw6G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	482
AclWI	GGATC	1 cut(s)	755
AcoI	YGGCCR	1 cut(s)	348
AcsI	RAATTY	1 cut(s)	974
AfaI	GTAC	4 cut(s)	17, 823, 924, 952
AfiI	CCNNNNNNNGG	1 cut(s)	1084
AgeI	ACCGGT	1 cut(s)	365
AgsI	TTSAA	5 cut(s)	73, 316, 419, 431, 979
AjiI	CACGTC	1 cut(s)	779
AjnI	CCWGG	3 cut(s)	214, 578, 1004
AluBI	AGCT	4 cut(s)	532, 594, 764, 848
AluI	AGCT	4 cut(s)	532, 594, 764, 848
Alw26I	GTCTC	2 cut(s)	503, 695
AlwI	GGATC	1 cut(s)	755
AlwNI	CAGNNNCTG	1 cut(s)	554
AoxI	GGCC	4 cut(s)	211, 348, 433, 717
ApeKI	GCWGC	3 cut(s)	529, 845, 860
ApoI	RAATTY	1 cut(s)	974
AsiGI	ACCGGT	1 cut(s)	365
AspLEI	GCGC	2 cut(s)	603, 1043
AspS9I	GGNCC	3 cut(s)	212, 731, 1059
AsuHPI	GGTGA	3 cut(s)	643, 682, 898
AvaII	GGWCC	2 cut(s)	731, 1059
BalI	TGGCCA	1 cut(s)	350
BarI	GAAGNNNNNNTAC	2 cut(s)	370, 402
BbvI	GCAGC	3 cut(s)	541, 857, 872
BccI	CCATC	4 cut(s)	121, 286, 291, 572
BceAI	ACGGC	1 cut(s)	143
BciT130I	CCWGG	3 cut(s)	216, 580, 1006
BciVI	GTATCC	1 cut(s)	1088
BcoDI	GTCTC	2 cut(s)	503, 695
BfaI	CTAG	2 cut(s)	570, 638
BfmI	CTRYAG	2 cut(s)	735, 843
BfoI	RGCGCY	1 cut(s)	604
BfuI	GTATCC	1 cut(s)	1088
BisI	GCNGC	4 cut(s)	483, 530, 846, 861
BlsI	GCNGC	4 cut(s)	484, 531, 847, 862
BmcAI	AGTACT	1 cut(s)	952
Bme1390I	CCNGG	3 cut(s)	216, 580, 1006
Bme18I	GGWCC	2 cut(s)	731, 1059
BmgBI	CACGTC	1 cut(s)	779
BmgT120I	GGNCC	3 cut(s)	212, 731, 1059
BmiI	GGNNCC	1 cut(s)	1060
BmrFI	CCNGG	3 cut(s)	216, 580, 1006
BmrI	ACTGGG	1 cut(s)	1073
BmsI	GCATC	2 cut(s)	624, 732
BmuI	ACTGGG	1 cut(s)	1073
BpmI	CTGGAG	3 cut(s)	237, 601, 1027
BsaJI	CCNNGG	2 cut(s)	214, 1004
BsaWI	WCCGGW	2 cut(s)	365, 917
BsaXI	ACNNNNNCTCC	2 cut(s)	643, 673
Bsc4I	CCNNNNNNNGG	1 cut(s)	1084
Bse118I	RCCGGY	1 cut(s)	365
Bse1I	ACTGG	1 cut(s)	1079
Bse3DI	GCAATG	2 cut(s)	558, 990
BseBI	CCWGG	3 cut(s)	216, 580, 1006
BseDI	CCNNGG	2 cut(s)	214, 1004
BseGI	GGATG	3 cut(s)	58, 132, 302
BseLI	CCNNNNNNNGG	1 cut(s)	1084
BseMI	GCAATG	2 cut(s)	558, 990
BseMII	CTCAG	3 cut(s)	30, 436, 938
BseNI	ACTGG	1 cut(s)	1079
BseXI	GCAGC	3 cut(s)	541, 857, 872
BshFI	GGCC	4 cut(s)	213, 350, 435, 719
BshTI	ACCGGT	1 cut(s)	365
BsiSI	CCGG	2 cut(s)	366, 918
BslFI	GGGAC	1 cut(s)	1072
BslI	CCNNNNNNNGG	1 cut(s)	1084
BsmAI	GTCTC	2 cut(s)	503, 695
BsmFI	GGGAC	1 cut(s)	1072
BsnI	GGCC	4 cut(s)	213, 350, 435, 719
Bsp143I	GATC	4 cut(s)	10, 55, 259, 747
BspACI	CCGC	1 cut(s)	482
BspANI	GGCC	4 cut(s)	213, 350, 435, 719
BspCNI	CTCAG	3 cut(s)	31, 435, 939
BspLI	GGNNCC	1 cut(s)	1060
BspMAI	CTGCAG	1 cut(s)	847
BspPI	GGATC	1 cut(s)	755
BsrDI	GCAATG	2 cut(s)	558, 990
BsrFI	RCCGGY	1 cut(s)	365
BsrI	ACTGG	1 cut(s)	1079
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	2 cut(s)	214, 1004
BssMI	GATC	4 cut(s)	10, 55, 259, 747
Bst2UI	CCWGG	3 cut(s)	216, 580, 1006
Bst4CI	ACNGT	2 cut(s)	874, 955
BstAPI	GCANNNNNTGC	1 cut(s)	866
BstC8I	GCNNGC	1 cut(s)	721
BstDEI	CTNAG	5 cut(s)	39, 422, 516, 760, 947
BstF5I	GGATG	3 cut(s)	58, 132, 302
BstH2I	RGCGCY	1 cut(s)	604
BstHHI	GCGC	2 cut(s)	603, 1043
BstKTI	GATC	4 cut(s)	13, 58, 262, 750
BstMAI	GTCTC	2 cut(s)	503, 695
BstMBI	GATC	4 cut(s)	10, 55, 259, 747
BstMWI	GCNNNNNNNGC	4 cut(s)	600, 617, 634, 866
BstNI	CCWGG	3 cut(s)	216, 580, 1006
BstNSI	RCATGY	1 cut(s)	38
BstSCI	CCNGG	3 cut(s)	214, 578, 1004
BstSFI	CTRYAG	2 cut(s)	735, 843
BstV1I	GCAGC	3 cut(s)	541, 857, 872
BsuI	GTATCC	1 cut(s)	1088
BsuRI	GGCC	4 cut(s)	213, 350, 435, 719
BtrI	CACGTC	1 cut(s)	779
BtsCI	GGATG	3 cut(s)	58, 132, 302
BtsI	GCAGTG	2 cut(s)	627, 703
BtsIMutI	CAGTG	4 cut(s)	400, 430, 627, 703
Cac8I	GCNNGC	1 cut(s)	721
CaiI	CAGNNNCTG	1 cut(s)	554
CfoI	GCGC	2 cut(s)	603, 1043
Cfr10I	RCCGGY	1 cut(s)	365
Cfr13I	GGNCC	3 cut(s)	212, 731, 1059
Csp6I	GTAC	4 cut(s)	16, 822, 923, 951
CspAI	ACCGGT	1 cut(s)	365
CspCI	CAANNNNNGTGG	2 cut(s)	760, 795
CviAII	CATG	4 cut(s)	35, 141, 856, 1027
CviQI	GTAC	4 cut(s)	16, 822, 923, 951
DdeI	CTNAG	5 cut(s)	39, 422, 516, 760, 947
DpnI	GATC	4 cut(s)	12, 57, 261, 749
DpnII	GATC	4 cut(s)	10, 55, 259, 747
EaeI	YGGCCR	1 cut(s)	348
Eco47I	GGWCC	2 cut(s)	731, 1059
EcoO109I	RGGNCCY	1 cut(s)	1059
EcoRI	GAATTC	1 cut(s)	974
EcoRII	CCWGG	3 cut(s)	214, 578, 1004
EcoT22I	ATGCAT	1 cut(s)	1021
FaeI	CATG	4 cut(s)	38, 144, 859, 1030
FalI	AAGNNNNNCTT	4 cut(s)	590, 622, 665, 697
FaqI	GGGAC	1 cut(s)	1072
FatI	CATG	4 cut(s)	34, 140, 855, 1026
FauNDI	CATATG	2 cut(s)	90, 1015
Fnu4HI	GCNGC	4 cut(s)	483, 530, 846, 861
FokI	GGATG	3 cut(s)	45, 139, 309
Fsp4HI	GCNGC	4 cut(s)	483, 530, 846, 861
FspBI	CTAG	2 cut(s)	570, 638
GlaI	GCGC	2 cut(s)	602, 1042
GluI	GCNGC	4 cut(s)	483, 530, 846, 861
GsuI	CTGGAG	3 cut(s)	237, 601, 1027
HaeII	RGCGCY	1 cut(s)	604
HaeIII	GGCC	4 cut(s)	213, 350, 435, 719
HapII	CCGG	2 cut(s)	366, 918
HhaI	GCGC	2 cut(s)	603, 1043
Hin1II	CATG	4 cut(s)	38, 144, 859, 1030
Hin6I	GCGC	2 cut(s)	601, 1041
HinP1I	GCGC	2 cut(s)	601, 1041
HincII	GTYRAC	2 cut(s)	363, 589
HindII	GTYRAC	2 cut(s)	363, 589
HinfI	GANTC	3 cut(s)	403, 663, 768
HpaII	CCGG	2 cut(s)	366, 918
HphI	GGTGA	3 cut(s)	643, 682, 898
Hpy166II	GTNNAC	3 cut(s)	363, 589, 998
Hpy188I	TCNGA	5 cut(s)	55, 340, 408, 556, 973
Hpy188III	TCNNGA	3 cut(s)	181, 289, 570
Hpy8I	GTNNAC	3 cut(s)	363, 589, 998
HpyAV	CCTTC	3 cut(s)	276, 667, 973
HpyCH4III	ACNGT	2 cut(s)	874, 955
HpyCH4IV	ACGT	2 cut(s)	778, 1023
HpyCH4V	TGCA	8 cut(s)	94, 199, 723, 833, 845, 903, 983, 1019
HpyF10VI	GCNNNNNNNGC	4 cut(s)	600, 617, 634, 866
HpyF3I	CTNAG	5 cut(s)	39, 422, 516, 760, 947
HpySE526I	ACGT	2 cut(s)	778, 1023
Hsp92II	CATG	4 cut(s)	38, 144, 859, 1030
HspAI	GCGC	2 cut(s)	601, 1041
Kzo9I	GATC	4 cut(s)	10, 55, 259, 747
Lsp1109I	GCAGC	3 cut(s)	541, 857, 872
LweI	GCATC	2 cut(s)	624, 732
MaeI	CTAG	2 cut(s)	570, 638
MaeII	ACGT	2 cut(s)	778, 1023
MaeIII	GTNAC	4 cut(s)	229, 236, 913, 1030
MalI	GATC	4 cut(s)	12, 57, 261, 749
MboI	GATC	4 cut(s)	10, 55, 259, 747
MboII	GAAGA	2 cut(s)	77, 254
MlsI	TGGCCA	1 cut(s)	350
MluCI	AATT	7 cut(s)	74, 203, 246, 460, 828, 926, 974
MluNI	TGGCCA	1 cut(s)	350
MlyI	GAGTC	1 cut(s)	762
MmeI	TCCRAC	1 cut(s)	380
MnlI	CCTC	5 cut(s)	212, 576, 670, 877, 1054
Mox20I	TGGCCA	1 cut(s)	350
Mph1103I	ATGCAT	1 cut(s)	1021
MscI	TGGCCA	1 cut(s)	350
MseI	TTAA	4 cut(s)	464, 537, 803, 1064
MslI	CAYNNNNRTG	1 cut(s)	709
Msp20I	TGGCCA	1 cut(s)	350
MspI	CCGG	2 cut(s)	366, 918
MspR9I	CCNGG	3 cut(s)	216, 580, 1006
MvaI	CCWGG	3 cut(s)	216, 580, 1006
MwoI	GCNNNNNNNGC	4 cut(s)	600, 617, 634, 866
NdeI	CATATG	2 cut(s)	90, 1015
NdeII	GATC	4 cut(s)	10, 55, 259, 747
NlaIII	CATG	4 cut(s)	38, 144, 859, 1030
NlaIV	GGNNCC	1 cut(s)	1060
NmuCI	GTSAC	2 cut(s)	229, 236
NsiI	ATGCAT	1 cut(s)	1021
NspI	RCATGY	1 cut(s)	38
PfeI	GAWTC	2 cut(s)	403, 663
PinAI	ACCGGT	1 cut(s)	365
PkrI	GCNGC	4 cut(s)	484, 531, 847, 862
PleI	GAGTC	1 cut(s)	762
PpsI	GAGTC	1 cut(s)	762
PpuMI	RGGWCCY	1 cut(s)	1059
Psp5II	RGGWCCY	1 cut(s)	1059
Psp6I	CCWGG	3 cut(s)	214, 578, 1004
PspGI	CCWGG	3 cut(s)	214, 578, 1004
PspN4I	GGNNCC	1 cut(s)	1060
PspPI	GGNCC	3 cut(s)	212, 731, 1059
PspPPI	RGGWCCY	1 cut(s)	1059
PstI	CTGCAG	1 cut(s)	847
PstNI	CAGNNNCTG	1 cut(s)	554
RsaI	GTAC	4 cut(s)	17, 823, 924, 952
RsaNI	GTAC	4 cut(s)	16, 822, 923, 951
RseI	CAYNNNNRTG	1 cut(s)	709
SaqAI	TTAA	4 cut(s)	464, 537, 803, 1064
SatI	GCNGC	4 cut(s)	483, 530, 846, 861
Sau3AI	GATC	4 cut(s)	10, 55, 259, 747
Sau96I	GGNCC	3 cut(s)	212, 731, 1059
ScaI	AGTACT	1 cut(s)	952
SchI	GAGTC	1 cut(s)	762
ScrFI	CCNGG	3 cut(s)	216, 580, 1006
SfaNI	GCATC	2 cut(s)	624, 732
SfcI	CTRYAG	2 cut(s)	735, 843
SinI	GGWCC	2 cut(s)	731, 1059
SmiMI	CAYNNNNRTG	1 cut(s)	709
Sse9I	AATT	7 cut(s)	74, 203, 246, 460, 828, 926, 974
SsiI	CCGC	1 cut(s)	482
SspMI	CTAG	2 cut(s)	570, 638
StyD4I	CCNGG	3 cut(s)	214, 578, 1004
TaaI	ACNGT	2 cut(s)	874, 955
TaiI	ACGT	2 cut(s)	781, 1026
TaqI	TCGA	1 cut(s)	766
TasI	AATT	7 cut(s)	74, 203, 246, 460, 828, 926, 974
TatI	WGTACW	2 cut(s)	922, 950
TauI	GCSGC	1 cut(s)	485
TfiI	GAWTC	2 cut(s)	403, 663
Tru1I	TTAA	4 cut(s)	464, 537, 803, 1064
Tru9I	TTAA	4 cut(s)	464, 537, 803, 1064
TscAI	CASTG	4 cut(s)	400, 430, 627, 703
TseFI	GTSAC	2 cut(s)	229, 236
TseI	GCWGC	3 cut(s)	529, 845, 860
Tsp45I	GTSAC	2 cut(s)	229, 236
TspDTI	ATGAA	3 cut(s)	77, 129, 955
TspGWI	ACGGA	1 cut(s)	804
TspRI	CASTG	4 cut(s)	400, 430, 627, 703
VpaK11BI	GGWCC	2 cut(s)	731, 1059
XapI	RAATTY	1 cut(s)	974
XbaI	TCTAGA	1 cut(s)	569
XceI	RCATGY	1 cut(s)	38
XspI	CTAG	2 cut(s)	570, 638
ZrmI	AGTACT	1 cut(s)	952
Zsp2I	ATGCAT	1 cut(s)	1021

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.