RchiOBHm_Chr6g0275211

UPF0695 membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001325
Physical Location & Seq
Reverse (-)
36857760 .. 36860529
2770 bp
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UTR
Exon/CDS
Intron
PRQ24690

Sequence Viewer

Length: 1398 bp
ATGGTCATGGAGGGGGGCGAGTACAGTGGGACTAATGACTCTGAACTGAGAGCAAGTGTATCAATCGATGTGACAAGAAGTGCCAGTTCTTCATTAAGGTGGCGCTCTTTAAGTTCATTAGGTGCTCATCCCTCTCAAGTAGATGAAGACATTGAAAGTGATAGTGTGTCAGAGGTGGGAGATATTGGGGATCGAGCTCTTCACAGCAACAGGTACAGTGTAAGTGGCAGTTTCAACTTCTCATCTGCAGAAGATATTCAATTGCAATCCTATGGATTCTGGTGTCATGATCCTACTGCATCCCATGCAATCTCCACGGTGTCGCCTTTGCCAGAGGAAATCATTTCTCCCCTGTCTACTGATGCCATAGTACGTGATGAGGAGAAAAACCAAGCAAGTACAGAAAGAATACCAAAATTGTTGGAGTATGGTTCATGTATGACTCATCTAGCCTTCTTTGGCATTCTTGGGGTCTTAACGAGATATCTACTGCAAAAATTGTTCGGCCCCAGAGTTGCTGGTGTGACAAGTGACCAAACAATTCTTTACCTTGATCTTCCTTCTAATATGGTTGGCTCTTTCTTGATGGGGTGGTGCGGTGTTGTTTTTAAAGCAGATATATCATATAGGTCAGATTTTTTGGCAATTGGATTGACAACAGGTTACCTGGGAAGTGTTACAACTTTTAGTGGTTGGAACCAGAAAATGCTTGAACTGAGTGTCGAAGGCCATTGGGTATTTGCAGGTCTCGGTTTTTTAATAGGTTTGTTTCTCGCTGCCTACTCCATCATTTTTGGGGTAGAAACATCCAAGTGTTTTAGGCAGCTGCTTGTAAGGAGTTCAGGGTATGGTGTTGCTAGCTCTAGAAAGAGCTGGAGAGTTGACAGCCTCAAGCGTCACTTGGCAGTTTTGGCAGTGTGTCTGCTGTTGCTAGCTGGATTATGGAGTATGAGTGGAATATTGATGAGGCAGGAGTTTAACAGCAGCAGCAGTGAGACACAACTTTGGTTGGCTTGCATCATTGGACCTCTAGGAGTCTGGGTCAGGTGGTTCTTAGCTCGACTAAATGGACGTGGATTGGGAAAGACAGGGTTGTTAAAATGGGTTCCATTTGGTACTCTAATTGCCAATGTTTCTGCAGCTTGTATCATGGCGGCACTTGCTACTGTAAAGAGAGAGGTAAATACCAAGACTTGCGATATTGTTGCAACAGGCATACAATTTGGATTTTTGGGTTGCCTGAGTACTGTATCTACGTTCATTGCCGAGTTTAATGCAATGAGAGAAAGTAAATACCCCTGGAGAGCATACATCTACGCCACAGTCACCATATGCACCTCATTTTGTTTAGGGACCCTGATATATTCTGTACCTGTTTGGGCAAAGGGAGACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRCB

Protein Analysis

465

Amino Acids

50.81

Weight (kDa)

6.4

Isoelectric Point (pI)

41.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRCB PF02537 150 - 267 2.7e-14 CrcB-like protein, Camphor Resistance (CrcB)
CRCB PF02537 337 - 450 3.6e-17 CrcB-like protein, Camphor Resistance (CrcB)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 734
AccI GTMKAC 1 cut(s) 356
AciI CCGC 2 cut(s) 597, 1154
AclWI GGATC 2 cut(s) 198, 284
AfaI GTAC 7 cut(s) 23, 215, 372, 400, 1117, 1246, 1371
AgsI TTSAA 4 cut(s) 155, 235, 260, 713
AjiI CACGTC 1 cut(s) 1073
AjnI CCWGG 2 cut(s) 666, 1298
AluBI AGCT 7 cut(s) 197, 826, 861, 873, 935, 1058, 1142
AluI AGCT 7 cut(s) 197, 826, 861, 873, 935, 1058, 1142
Alw21I GWGCWC 2 cut(s) 127, 199
Alw26I GTCTC 3 cut(s) 752, 989, 1383
AlwI GGATC 2 cut(s) 198, 284
AoxI GGCC 2 cut(s) 505, 727
ApeKI GCWGC 6 cut(s) 776, 823, 826, 984, 987, 1139
Asp700I GAANNNNTTC 1 cut(s) 255
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 3 cut(s) 506, 1025, 1353
AsuHPI GGTGA 1 cut(s) 1318
AsuNHI GCTAGC 2 cut(s) 857, 931
AvaII GGWCC 2 cut(s) 1025, 1353
BanII GRGCYC 1 cut(s) 199
BbsI GAAGAC 1 cut(s) 153
Bbv12I GWGCWC 2 cut(s) 127, 199
BbvI GCAGC 6 cut(s) 763, 813, 835, 996, 999, 1151
BccI CCATC 2 cut(s) 580, 794
BcgI CGANNNNNNTGC 4 cut(s) 1187, 1221, 1256, 1290
BciT130I CCWGG 2 cut(s) 668, 1300
BcoDI GTCTC 3 cut(s) 752, 989, 1383
BfaI CTAG 5 cut(s) 449, 858, 864, 932, 1031
BfmI CTRYAG 2 cut(s) 246, 1137
BfoI RGCGCY 1 cut(s) 106
BfuAI ACCTGC 1 cut(s) 734
BisI GCNGC 7 cut(s) 777, 824, 827, 985, 988, 1140, 1155
BlsI GCNGC 7 cut(s) 778, 825, 828, 986, 989, 1141, 1156
BmcAI AGTACT 1 cut(s) 1246
Bme1390I CCNGG 2 cut(s) 668, 1300
Bme18I GGWCC 2 cut(s) 1025, 1353
BmgBI CACGTC 1 cut(s) 1073
BmgT120I GGNCC 3 cut(s) 506, 1025, 1353
BmiI GGNNCC 5 cut(s) 508, 698, 1107, 1354, 1355
BmrFI CCNGG 2 cut(s) 668, 1300
BmsI GCATC 3 cut(s) 308, 352, 1026
BmtI GCTAGC 2 cut(s) 861, 935
BpiI GAAGAC 1 cut(s) 153
BpmI CTGGAG 2 cut(s) 895, 1321
BpuEI CTTGAG 2 cut(s) 120, 875
Bsa29I ATCGAT 1 cut(s) 66
BsaAI YACGTR 1 cut(s) 374
BsaI GGTCTC 1 cut(s) 752
BsaJI CCNNGG 3 cut(s) 315, 667, 1298
BsaXI ACNNNNNCTCC 4 cut(s) 937, 967, 1026, 1056
Bse1I ACTGG 1 cut(s) 84
Bse3DI GCAATG 2 cut(s) 1260, 1284
BseBI CCWGG 2 cut(s) 668, 1300
BseCI ATCGAT 1 cut(s) 66
BseDI CCNNGG 3 cut(s) 315, 667, 1298
BseGI GGATG 3 cut(s) 127, 299, 806
BseMI GCAATG 2 cut(s) 1260, 1284
BseMII CTCAG 3 cut(s) 38, 707, 1232
BseNI ACTGG 1 cut(s) 84
BseRI GAGGAG 1 cut(s) 395
BseXI GCAGC 6 cut(s) 763, 813, 835, 996, 999, 1151
BshFI GGCC 2 cut(s) 507, 729
BshVI ATCGAT 1 cut(s) 66
BsiHKAI GWGCWC 2 cut(s) 127, 199
BslFI GGGAC 2 cut(s) 43, 1366
BsmAI GTCTC 3 cut(s) 752, 989, 1383
BsmFI GGGAC 2 cut(s) 43, 1366
BsmI GAATGC 1 cut(s) 462
BsnI GGCC 2 cut(s) 507, 729
Bso31I GGTCTC 1 cut(s) 752
Bsp1286I GDGCHC 2 cut(s) 127, 199
Bsp143I GATC 3 cut(s) 190, 289, 553
BspACI CCGC 2 cut(s) 597, 1154
BspANI GGCC 2 cut(s) 507, 729
BspCNI CTCAG 3 cut(s) 39, 708, 1233
BspDI ATCGAT 1 cut(s) 66
BspHI TCATGA 1 cut(s) 286
BspLI GGNNCC 5 cut(s) 508, 698, 1107, 1354, 1355
BspMAI CTGCAG 2 cut(s) 250, 1141
BspMI ACCTGC 1 cut(s) 734
BspOI GCTAGC 2 cut(s) 861, 935
BspPI GGATC 2 cut(s) 198, 284
BspQI GCTCTTC 1 cut(s) 204
BspTNI GGTCTC 1 cut(s) 752
BsrDI GCAATG 2 cut(s) 1260, 1284
BsrI ACTGG 1 cut(s) 84
BssECI CCNNGG 3 cut(s) 315, 667, 1298
BssMI GATC 3 cut(s) 190, 289, 553
Bst2UI CCWGG 2 cut(s) 668, 1300
Bst4CI ACNGT 6 cut(s) 26, 218, 319, 1168, 1249, 1324
Bst6I CTCTTC 1 cut(s) 204
BstAPI GCANNNNNTGC 1 cut(s) 305
BstBAI YACGTR 1 cut(s) 374
BstC8I GCNNGC 3 cut(s) 859, 933, 1015
BstDEI CTNAG 4 cut(s) 47, 716, 1054, 1241
BstDSI CCRYGG 1 cut(s) 315
BstEII GGTNACC 1 cut(s) 662
BstF5I GGATG 3 cut(s) 127, 299, 806
BstH2I RGCGCY 1 cut(s) 106
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 3 cut(s) 193, 292, 556
BstMAI GTCTC 3 cut(s) 752, 989, 1383
BstMBI GATC 3 cut(s) 190, 289, 553
BstMWI GCNNNNNNNGC 3 cut(s) 305, 911, 1160
BstNI CCWGG 2 cut(s) 668, 1300
BstPI GGTNACC 1 cut(s) 662
BstSCI CCNGG 2 cut(s) 666, 1298
BstSFI CTRYAG 2 cut(s) 246, 1137
BstV1I GCAGC 6 cut(s) 763, 813, 835, 996, 999, 1151
BstV2I GAAGAC 1 cut(s) 153
Bsu15I ATCGAT 1 cut(s) 66
BsuRI GGCC 2 cut(s) 507, 729
BsuTUI ATCGAT 1 cut(s) 66
BtgI CCRYGG 1 cut(s) 315
BtrI CACGTC 1 cut(s) 1073
BtsCI GGATG 3 cut(s) 127, 299, 806
BtsI GCAGTG 2 cut(s) 921, 997
BtsIMutI CAGTG 4 cut(s) 31, 223, 921, 997
BveI ACCTGC 1 cut(s) 734
Cac8I GCNNGC 3 cut(s) 859, 933, 1015
CciI TCATGA 1 cut(s) 286
CfoI GCGC 1 cut(s) 105
Cfr13I GGNCC 3 cut(s) 506, 1025, 1353
ClaI ATCGAT 1 cut(s) 66
CseI GACGC 1 cut(s) 884
Csp6I GTAC 7 cut(s) 22, 214, 371, 399, 1116, 1245, 1370
CviAII CATG 5 cut(s) 7, 287, 305, 435, 1150
CviQI GTAC 7 cut(s) 22, 214, 371, 399, 1116, 1245, 1370
DdeI CTNAG 4 cut(s) 47, 716, 1054, 1241
DpnI GATC 3 cut(s) 192, 291, 555
DpnII GATC 3 cut(s) 190, 289, 553
DraI TTTAAA 1 cut(s) 610
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Ecl136II GAGCTC 1 cut(s) 197
Eco24I GRGCYC 1 cut(s) 199
Eco31I GGTCTC 1 cut(s) 752
Eco32I GATATC 1 cut(s) 485
Eco47I GGWCC 2 cut(s) 1025, 1353
Eco53kI GAGCTC 1 cut(s) 197
Eco91I GGTNACC 1 cut(s) 662
EcoICRI GAGCTC 1 cut(s) 197
EcoO109I RGGNCCY 1 cut(s) 1353
EcoO65I GGTNACC 1 cut(s) 662
EcoRII CCWGG 2 cut(s) 666, 1298
EcoRV GATATC 1 cut(s) 485
EcoT38I GRGCYC 1 cut(s) 199
FaeI CATG 5 cut(s) 10, 290, 308, 438, 1153
FalI AAGNNNNNCTT 2 cut(s) 884, 916
FaqI GGGAC 2 cut(s) 43, 1366
FatI CATG 5 cut(s) 6, 286, 304, 434, 1149
FauNDI CATATG 1 cut(s) 1331
FblI GTMKAC 1 cut(s) 356
Fnu4HI GCNGC 7 cut(s) 777, 824, 827, 985, 988, 1140, 1155
FokI GGATG 3 cut(s) 114, 286, 793
FriOI GRGCYC 1 cut(s) 199
Fsp4HI GCNGC 7 cut(s) 777, 824, 827, 985, 988, 1140, 1155
FspBI CTAG 5 cut(s) 449, 858, 864, 932, 1031
GlaI GCGC 1 cut(s) 104
GluI GCNGC 7 cut(s) 777, 824, 827, 985, 988, 1140, 1155
GsuI CTGGAG 2 cut(s) 895, 1321
HaeII RGCGCY 1 cut(s) 106
HaeIII GGCC 2 cut(s) 507, 729
HgaI GACGC 1 cut(s) 884
HhaI GCGC 1 cut(s) 105
Hin1II CATG 5 cut(s) 10, 290, 308, 438, 1153
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HincII GTYRAC 1 cut(s) 883
HindII GTYRAC 1 cut(s) 883
HinfI GANTC 4 cut(s) 38, 276, 442, 1035
HphI GGTGA 1 cut(s) 1318
Hpy166II GTNNAC 2 cut(s) 357, 883
Hpy188I TCNGA 3 cut(s) 43, 172, 634
Hpy188III TCNNGA 3 cut(s) 287, 583, 864
Hpy8I GTNNAC 2 cut(s) 357, 883
HpyAV CCTTC 3 cut(s) 463, 570, 719
HpyCH4III ACNGT 6 cut(s) 26, 218, 319, 1168, 1249, 1324
HpyCH4IV ACGT 3 cut(s) 373, 1072, 1256
HpyF10VI GCNNNNNNNGC 3 cut(s) 305, 911, 1160
HpyF3I CTNAG 4 cut(s) 47, 716, 1054, 1241
HpySE526I ACGT 3 cut(s) 373, 1072, 1256
Hsp92II CATG 5 cut(s) 10, 290, 308, 438, 1153
HspAI GCGC 1 cut(s) 103
KflI GGGWCCC 1 cut(s) 1353
Kzo9I GATC 3 cut(s) 190, 289, 553
LguI GCTCTTC 1 cut(s) 204
Lsp1109I GCAGC 6 cut(s) 763, 813, 835, 996, 999, 1151
LweI GCATC 3 cut(s) 308, 352, 1026
MaeI CTAG 5 cut(s) 449, 858, 864, 932, 1031
MaeII ACGT 3 cut(s) 373, 1072, 1256
MaeIII GTNAC 7 cut(s) 70, 523, 530, 662, 676, 896, 1324
MalI GATC 3 cut(s) 192, 291, 555
MboI GATC 3 cut(s) 190, 289, 553
MboII GAAGA 5 cut(s) 81, 158, 191, 263, 548
MfeI CAATTG 2 cut(s) 260, 645
MhlI GDGCHC 2 cut(s) 127, 199
MluCI AATT 7 cut(s) 260, 416, 497, 540, 645, 1122, 1220
MlyI GAGTC 3 cut(s) 32, 436, 1044
MmeI TCCRAC 2 cut(s) 402, 674
MroXI GAANNNNTTC 1 cut(s) 255
MseI TTAA 8 cut(s) 95, 110, 476, 609, 758, 978, 1097, 1272
MslI CAYNNNNRTG 2 cut(s) 97, 811
MspA1I CMGCKG 1 cut(s) 826
MspR9I CCNGG 2 cut(s) 668, 1300
MunI CAATTG 2 cut(s) 260, 645
Mva1269I GAATGC 1 cut(s) 462
MvaI CCWGG 2 cut(s) 668, 1300
MwoI GCNNNNNNNGC 3 cut(s) 305, 911, 1160
NdeI CATATG 1 cut(s) 1331
NdeII GATC 3 cut(s) 190, 289, 553
NheI GCTAGC 2 cut(s) 857, 931
NlaIII CATG 5 cut(s) 10, 290, 308, 438, 1153
NlaIV GGNNCC 5 cut(s) 508, 698, 1107, 1354, 1355
NmeAIII GCCGAG 1 cut(s) 1291
NmuCI GTSAC 5 cut(s) 70, 523, 530, 896, 1324
PagI TCATGA 1 cut(s) 286
PciSI GCTCTTC 1 cut(s) 204
PctI GAATGC 1 cut(s) 462
PdmI GAANNNNTTC 1 cut(s) 255
PfeI GAWTC 1 cut(s) 276
PkrI GCNGC 7 cut(s) 778, 825, 828, 986, 989, 1141, 1156
PleI GAGTC 3 cut(s) 32, 436, 1043
PpsI GAGTC 3 cut(s) 32, 436, 1043
Ppu21I YACGTR 1 cut(s) 374
PpuMI RGGWCCY 1 cut(s) 1353
Psp124BI GAGCTC 1 cut(s) 199
Psp5II RGGWCCY 1 cut(s) 1353
Psp6I CCWGG 2 cut(s) 666, 1298
PspEI GGTNACC 1 cut(s) 662
PspGI CCWGG 2 cut(s) 666, 1298
PspN4I GGNNCC 5 cut(s) 508, 698, 1107, 1354, 1355
PspPI GGNCC 3 cut(s) 506, 1025, 1353
PspPPI RGGWCCY 1 cut(s) 1353
PstI CTGCAG 2 cut(s) 250, 1141
PvuII CAGCTG 1 cut(s) 826
RsaI GTAC 7 cut(s) 23, 215, 372, 400, 1117, 1246, 1371
RsaNI GTAC 7 cut(s) 22, 214, 371, 399, 1116, 1245, 1370
RseI CAYNNNNRTG 2 cut(s) 97, 811
SacI GAGCTC 1 cut(s) 199
SapI GCTCTTC 1 cut(s) 204
SaqAI TTAA 8 cut(s) 95, 110, 476, 609, 758, 978, 1097, 1272
SatI GCNGC 7 cut(s) 777, 824, 827, 985, 988, 1140, 1155
Sau3AI GATC 3 cut(s) 190, 289, 553
Sau96I GGNCC 3 cut(s) 506, 1025, 1353
ScaI AGTACT 1 cut(s) 1246
SchI GAGTC 3 cut(s) 32, 436, 1044
ScrFI CCNGG 2 cut(s) 668, 1300
SduI GDGCHC 2 cut(s) 127, 199
SfaNI GCATC 3 cut(s) 308, 352, 1026
SfcI CTRYAG 2 cut(s) 246, 1137
SinI GGWCC 2 cut(s) 1025, 1353
SmiMI CAYNNNNRTG 2 cut(s) 97, 811
SmlI CTYRAG 2 cut(s) 135, 890
SmoI CTYRAG 2 cut(s) 135, 890
Sse9I AATT 7 cut(s) 260, 416, 497, 540, 645, 1122, 1220
SsiI CCGC 2 cut(s) 597, 1154
SspI AATATT 1 cut(s) 960
SspMI CTAG 5 cut(s) 449, 858, 864, 932, 1031
SstI GAGCTC 1 cut(s) 199
StyD4I CCNGG 2 cut(s) 666, 1298
TaaI ACNGT 6 cut(s) 26, 218, 319, 1168, 1249, 1324
TaiI ACGT 3 cut(s) 376, 1075, 1259
TaqI TCGA 4 cut(s) 66, 193, 723, 1060
TasI AATT 7 cut(s) 260, 416, 497, 540, 645, 1122, 1220
TatI WGTACW 3 cut(s) 21, 398, 1244
TauI GCSGC 1 cut(s) 1157
TfiI GAWTC 1 cut(s) 276
Tru1I TTAA 8 cut(s) 95, 110, 476, 609, 758, 978, 1097, 1272
Tru9I TTAA 8 cut(s) 95, 110, 476, 609, 758, 978, 1097, 1272
TscAI CASTG 4 cut(s) 31, 223, 921, 997
TseFI GTSAC 5 cut(s) 70, 523, 530, 896, 1324
TseI GCWGC 6 cut(s) 776, 823, 826, 984, 987, 1139
Tsp45I GTSAC 5 cut(s) 70, 523, 530, 896, 1324
TspDTI ATGAA 5 cut(s) 81, 105, 159, 423, 1249
TspRI CASTG 4 cut(s) 31, 223, 921, 997
VpaK11BI GGWCC 2 cut(s) 1025, 1353
XbaI TCTAGA 1 cut(s) 863
XmiI GTMKAC 1 cut(s) 356
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 5 cut(s) 449, 858, 864, 932, 1031
ZrmI AGTACT 1 cut(s) 1246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.