Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004526

Physical Location & Seq

Genomic Coordinates Reverse (-)

23908318 .. 23910053

Gene Structure 1736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g31070.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGGAAGAAGCTCTCGATTCGAAAAGGAGGACATGAAGAAAGGAGTGTGGACAGCCCGAGAAGACCAGATTCTGATAGACTACGTCAAAAAGCACGGTGAAGGCAAATGGGGAAAAATTTCAAGAGAAACAGGTCTGAGAAGATGTGGGAAGAGTGTGAGACTTAGGTGGTTGAATTATCTGAGGCCCGGTATTAAGAGAGGCAACATTGCAGAAGATGAAGAGGAGCTCATCATCAGGCTCCACAAACTTTTAGGCAACAGATGGTCACTGATAGCCGGAAGAATACCGGGCCGAACTGACAATGAGATAAAAAACTACTGGAATTCCACCCTAAGGAGGAAGCTACAACAACAAAATCACTCGAATGAGACCAAGGAGAACTCCTTATCCCCCAGGCGCAGTGGCGGCGCGGCCGAGGAGGACGAACCAGAGAAGGACGAACCACATTCGACCACAAATAATGGAGGGGTTGGAGGAGGAGGAGGGATGATCAAACCAACTAGCTTGTACTGCTTTACCAATCACAGTGTTAGGGAAGAAGATATTCAGCGTTATCATCTTGGAAGTACCTCTACTACTACCTGCACTGCCAATAATACTACATTATTCCCTGGCGGCCCCACTGTTGAAGCTGAAGCAAAAAAGACTGATATAGAGCTAGCTGGAGATGACCTGAGCGATGACGTGATGTGGAATGATTTCATAATGGATCTAAATGAAGGCCAGTTAGATATATCTGAATTTCTCCAAACAGACTTTCCAAAGCTTTGTGAATCGGAGAGTCCTATGAATGTGGACGTTGGGGGTTGCAGCACCACCAATCATGAGCTGCCAAATAACTGGGAAGGCGGTCGTAGCCTGGTCGCCGCCACCGCCGCCGCCGAGAGTTGTCTTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

301

Amino Acids

33.5

Weight (kDa)

5.52

Isoelectric Point (pI)

52.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 66	7.3e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 80	3e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	73 - 116	3.4e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	77 - 131	7.6e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004526)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31070 FvH4_2g31070 FvH4_4g02400
rosa_chinensis	RchiOBHm_Chr4g0389841 RchiOBHm_Chr5g0019651 RchiOBHm_Chr6g0311731
rosa_laevigata	RLG00000009947 RLG00000010379
rosa_multiflora	Rmu_co8139852.1_g000001 Rmu_sc0002702.1_g000022 Rmu_sc0002888.1_g000030 Rmu_sc0030932.1_g000007
rosa_roxburghii	Rroxscaffold_1G00058440 Rroxscaffold_5G00335890 Rroxscaffold_5G00335920 Rroxscaffold_7G00157360
rosa_rugosa	Rorug03G0325700 Rorug03G0326000 Rorug03G0326100 Rorug03G0326200 Rorug05G0052400
rosa_samantha	Rh4AG030400 Rh4BG023600 Rh4CG033000 Rh5AG143000 Rh5BG141600 Rh5CG153600 Rh6BG517200 Rh6DG508800
rosa_wichuraiana	Rw4G002290 Rw5G012670 Rw6G044060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	593
AccII	CGCG	1 cut(s)	413
AciI	CCGC	8 cut(s)	408, 413, 618, 852, 870, 876, 879, 882
AclWI	GGATC	1 cut(s)	720
AcoI	YGGCCR	1 cut(s)	414
AcsI	RAATTY	3 cut(s)	117, 325, 743
AcuI	CTGAAG	1 cut(s)	657
AfaI	GTAC	2 cut(s)	512, 571
AfiI	CCNNNNNNNGG	2 cut(s)	336, 339
AgsI	TTSAA	3 cut(s)	123, 175, 632
AjiI	CACGTC	1 cut(s)	688
AjnI	CCWGG	3 cut(s)	395, 613, 861
AjuI	GAANNNNNNNTTGG	2 cut(s)	744, 776
AloI	GAACNNNNNNTCC	2 cut(s)	374, 406
AluBI	AGCT	9 cut(s)	12, 229, 346, 507, 635, 661, 665, 769, 832
AluI	AGCT	9 cut(s)	12, 229, 346, 507, 635, 661, 665, 769, 832
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	2 cut(s)	154, 365
AlwI	GGATC	1 cut(s)	720
AlwNI	CAGNNNCTG	1 cut(s)	73
Ama87I	CYCGRG	1 cut(s)	57
AoxI	GGCC	5 cut(s)	185, 292, 414, 619, 724
ApeKI	GCWGC	2 cut(s)	813, 832
ApoI	RAATTY	3 cut(s)	117, 325, 743
Asp700I	GAANNNNTTC	3 cut(s)	118, 546, 701
AspLEI	GCGC	2 cut(s)	402, 413
AspS9I	GGNCC	3 cut(s)	186, 292, 620
AsuC2I	CCSGG	2 cut(s)	189, 291
AsuHPI	GGTGA	1 cut(s)	110
AsuII	TTCGAA	1 cut(s)	21
AsuNHI	GCTAGC	1 cut(s)	661
AvaI	CYCGRG	1 cut(s)	57
AxyI	CCTNAGG	1 cut(s)	335
BanII	GRGCYC	1 cut(s)	231
BarI	GAAGNNNNNNTAC	2 cut(s)	559, 591
BbsI	GAAGAC	2 cut(s)	69, 887
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	2 cut(s)	819, 825
BccI	CCATC	1 cut(s)	258
BciT130I	CCWGG	3 cut(s)	397, 615, 863
BclI	TGATCA	1 cut(s)	492
BcnI	CCSGG	2 cut(s)	189, 291
BcoDI	GTCTC	2 cut(s)	154, 365
BfaI	CTAG	2 cut(s)	504, 662
BfuAI	ACCTGC	1 cut(s)	593
BisI	GCNGC	8 cut(s)	409, 414, 619, 814, 833, 870, 879, 882
BlsI	GCNGC	8 cut(s)	410, 415, 620, 815, 834, 871, 880, 883
Bme1390I	CCNGG	5 cut(s)	189, 291, 397, 615, 863
BmeT110I	CYCGRG	1 cut(s)	57
BmgBI	CACGTC	1 cut(s)	688
BmgT120I	GGNCC	3 cut(s)	186, 292, 620
BmiI	GGNNCC	2 cut(s)	242, 622
BmrFI	CCNGG	5 cut(s)	189, 291, 397, 615, 863
BmrI	ACTGGG	1 cut(s)	853
BmtI	GCTAGC	1 cut(s)	665
BmuI	ACTGGG	1 cut(s)	853
BpiI	GAAGAC	2 cut(s)	69, 887
BpmI	CTGGAG	1 cut(s)	687
Bpu10I	CCTNAGC	1 cut(s)	677
Bpu14I	TTCGAA	1 cut(s)	21
BpuMI	CCSGG	2 cut(s)	189, 291
BsaI	GGTCTC	1 cut(s)	365
BsaJI	CCNNGG	4 cut(s)	375, 395, 417, 613
Bsc4I	CCNNNNNNNGG	2 cut(s)	336, 339
Bse1I	ACTGG	3 cut(s)	326, 727, 848
Bse21I	CCTNAGG	1 cut(s)	335
Bse3DI	GCAATG	1 cut(s)	207
BseBI	CCWGG	3 cut(s)	397, 615, 863
BseDI	CCNNGG	4 cut(s)	375, 395, 417, 613
BseGI	GGATG	1 cut(s)	495
BseLI	CCNNNNNNNGG	2 cut(s)	336, 339
BseMI	GCAATG	1 cut(s)	207
BseMII	CTCAG	3 cut(s)	128, 173, 668
BseNI	ACTGG	3 cut(s)	326, 727, 848
BseRI	GAGGAG	5 cut(s)	239, 434, 492, 495, 498
BseX3I	CGGCCG	1 cut(s)	414
BseXI	GCAGC	2 cut(s)	819, 825
BsgI	GTGCAG	1 cut(s)	571
Bsh1236I	CGCG	1 cut(s)	413
Bsh1285I	CGRYCG	2 cut(s)	417, 856
BshFI	GGCC	5 cut(s)	187, 294, 416, 621, 726
BsiEI	CGRYCG	2 cut(s)	417, 856
BsiHKAI	GWGCWC	1 cut(s)	231
BsiHKCI	CYCGRG	1 cut(s)	57
BsiSI	CCGG	3 cut(s)	189, 279, 290
BslI	CCNNNNNNNGG	2 cut(s)	336, 339
BsmAI	GTCTC	2 cut(s)	154, 365
BsnI	GGCC	5 cut(s)	187, 294, 416, 621, 726
Bso31I	GGTCTC	1 cut(s)	365
BsoBI	CYCGRG	1 cut(s)	57
Bsp119I	TTCGAA	1 cut(s)	21
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	2 cut(s)	492, 712
BspACI	CCGC	8 cut(s)	408, 413, 618, 852, 870, 876, 879, 882
BspANI	GGCC	5 cut(s)	187, 294, 416, 621, 726
BspCNI	CTCAG	3 cut(s)	129, 174, 669
BspFNI	CGCG	1 cut(s)	413
BspHI	TCATGA	1 cut(s)	826
BspLI	GGNNCC	2 cut(s)	242, 622
BspMI	ACCTGC	1 cut(s)	593
BspOI	GCTAGC	1 cut(s)	665
BspPI	GGATC	1 cut(s)	720
BspT104I	TTCGAA	1 cut(s)	21
BspTNI	GGTCTC	1 cut(s)	365
BsrDI	GCAATG	1 cut(s)	207
BsrI	ACTGG	3 cut(s)	326, 727, 848
BssECI	CCNNGG	4 cut(s)	375, 395, 417, 613
BssMI	GATC	2 cut(s)	492, 712
BssT1I	CCWWGG	1 cut(s)	375
Bst2UI	CCWGG	3 cut(s)	397, 615, 863
Bst4CI	ACNGT	3 cut(s)	98, 530, 628
Bst6I	CTCTTC	2 cut(s)	146, 216
BstBI	TTCGAA	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	663
BstDEI	CTNAG	6 cut(s)	137, 164, 182, 335, 677, 900
BstF5I	GGATG	1 cut(s)	495
BstFNI	CGCG	1 cut(s)	413
BstHHI	GCGC	2 cut(s)	402, 413
BstKTI	GATC	2 cut(s)	495, 715
BstMAI	GTCTC	2 cut(s)	154, 365
BstMBI	GATC	2 cut(s)	492, 712
BstMCI	CGRYCG	2 cut(s)	417, 856
BstMWI	GCNNNNNNNGC	5 cut(s)	408, 513, 858, 875, 878
BstNI	CCWGG	3 cut(s)	397, 615, 863
BstSCI	CCNGG	5 cut(s)	187, 289, 395, 613, 861
BstUI	CGCG	1 cut(s)	413
BstV1I	GCAGC	2 cut(s)	819, 825
BstV2I	GAAGAC	2 cut(s)	69, 887
BstX2I	RGATCY	1 cut(s)	712
BstXI	CCANNNNNNTGG	1 cut(s)	843
BstYI	RGATCY	1 cut(s)	712
BstZI	CGGCCG	1 cut(s)	414
Bsu36I	CCTNAGG	1 cut(s)	335
BsuRI	GGCC	5 cut(s)	187, 294, 416, 621, 726
BtgZI	GCGATG	1 cut(s)	696
BtrI	CACGTC	1 cut(s)	688
BtsCI	GGATG	1 cut(s)	495
BtsI	GCAGTG	2 cut(s)	409, 588
BtsIMutI	CAGTG	5 cut(s)	269, 409, 535, 588, 624
BveI	ACCTGC	1 cut(s)	593
Cac8I	GCNNGC	1 cut(s)	663
CaiI	CAGNNNCTG	1 cut(s)	73
CciI	TCATGA	1 cut(s)	826
CfoI	GCGC	2 cut(s)	402, 413
Cfr13I	GGNCC	3 cut(s)	186, 292, 620
Csp6I	GTAC	2 cut(s)	511, 570
CviAII	CATG	2 cut(s)	34, 827
CviQI	GTAC	2 cut(s)	511, 570
DdeI	CTNAG	6 cut(s)	137, 164, 182, 335, 677, 900
DpnI	GATC	2 cut(s)	494, 714
DpnII	GATC	2 cut(s)	492, 712
EaeI	YGGCCR	1 cut(s)	414
EagI	CGGCCG	1 cut(s)	414
Eam1104I	CTCTTC	2 cut(s)	146, 216
EarI	CTCTTC	2 cut(s)	146, 216
Ecl136II	GAGCTC	1 cut(s)	229
EclXI	CGGCCG	1 cut(s)	414
Eco130I	CCWWGG	1 cut(s)	375
Eco24I	GRGCYC	1 cut(s)	231
Eco31I	GGTCTC	1 cut(s)	365
Eco52I	CGGCCG	1 cut(s)	414
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	657
Eco81I	CCTNAGG	1 cut(s)	335
Eco88I	CYCGRG	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	229
EcoRI	GAATTC	1 cut(s)	325
EcoRII	CCWGG	3 cut(s)	395, 613, 861
EcoT14I	CCWWGG	1 cut(s)	375
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	2 cut(s)	37, 830
FaiI	YATR	6 cut(s)	35, 656, 707, 737, 791, 828
FatI	CATG	2 cut(s)	33, 826
FbaI	TGATCA	1 cut(s)	492
Fnu4HI	GCNGC	8 cut(s)	409, 414, 619, 814, 833, 870, 879, 882
FokI	GGATG	1 cut(s)	502
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	8 cut(s)	409, 414, 619, 814, 833, 870, 879, 882
FspBI	CTAG	2 cut(s)	504, 662
GlaI	GCGC	2 cut(s)	401, 412
GluI	GCNGC	8 cut(s)	409, 414, 619, 814, 833, 870, 879, 882
GsuI	CTGGAG	1 cut(s)	687
HaeIII	GGCC	5 cut(s)	187, 294, 416, 621, 726
HapII	CCGG	3 cut(s)	189, 279, 290
HhaI	GCGC	2 cut(s)	402, 413
Hin1II	CATG	2 cut(s)	37, 830
Hin6I	GCGC	2 cut(s)	400, 411
HinP1I	GCGC	2 cut(s)	400, 411
HindIII	AAGCTT	1 cut(s)	767
HinfI	GANTC	4 cut(s)	18, 70, 776, 784
HpaII	CCGG	3 cut(s)	189, 279, 290
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	2 cut(s)	51, 799
Hpy188I	TCNGA	5 cut(s)	75, 138, 183, 742, 781
Hpy188III	TCNNGA	3 cut(s)	15, 123, 827
Hpy8I	GTNNAC	2 cut(s)	51, 799
HpyAV	CCTTC	4 cut(s)	95, 430, 716, 842
HpyCH4III	ACNGT	3 cut(s)	98, 530, 628
HpyCH4IV	ACGT	3 cut(s)	84, 687, 801
HpyCH4V	TGCA	3 cut(s)	212, 588, 813
HpyF10VI	GCNNNNNNNGC	5 cut(s)	408, 513, 858, 875, 878
HpyF3I	CTNAG	6 cut(s)	137, 164, 182, 335, 677, 900
HpySE526I	ACGT	3 cut(s)	84, 687, 801
Hsp92II	CATG	2 cut(s)	37, 830
HspAI	GCGC	2 cut(s)	400, 411
Ksp22I	TGATCA	1 cut(s)	492
Kzo9I	GATC	2 cut(s)	492, 712
LmnI	GCTCC	2 cut(s)	226, 246
Lsp1109I	GCAGC	2 cut(s)	819, 825
MaeI	CTAG	2 cut(s)	504, 662
MaeII	ACGT	3 cut(s)	84, 687, 801
MaeIII	GTNAC	1 cut(s)	267
MalI	GATC	2 cut(s)	494, 714
MboI	GATC	2 cut(s)	492, 712
MflI	RGATCY	1 cut(s)	712
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	4 cut(s)	117, 175, 325, 743
MlyI	GAGTC	1 cut(s)	793
MmeI	TCCRAC	1 cut(s)	454
MroXI	GAANNNNTTC	3 cut(s)	118, 546, 701
MseI	TTAA	1 cut(s)	195
MslI	CAYNNNNRTG	1 cut(s)	366
MspI	CCGG	3 cut(s)	189, 279, 290
MspR9I	CCNGG	5 cut(s)	189, 291, 397, 615, 863
MvaI	CCWGG	3 cut(s)	397, 615, 863
MvnI	CGCG	1 cut(s)	413
MwoI	GCNNNNNNNGC	5 cut(s)	408, 513, 858, 875, 878
NciI	CCSGG	2 cut(s)	189, 291
NdeII	GATC	2 cut(s)	492, 712
NheI	GCTAGC	1 cut(s)	661
NlaIII	CATG	2 cut(s)	37, 830
NlaIV	GGNNCC	2 cut(s)	242, 622
NmeAIII	GCCGAG	1 cut(s)	442
NmuCI	GTSAC	1 cut(s)	267
NspV	TTCGAA	1 cut(s)	21
PagI	TCATGA	1 cut(s)	826
PdmI	GAANNNNTTC	3 cut(s)	118, 546, 701
PfeI	GAWTC	3 cut(s)	18, 70, 776
PflFI	GACNNNGTC	1 cut(s)	83
PkrI	GCNGC	8 cut(s)	410, 415, 620, 815, 834, 871, 880, 883
PleI	GAGTC	1 cut(s)	792
PpsI	GAGTC	1 cut(s)	792
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	3 cut(s)	395, 613, 861
PspGI	CCWGG	3 cut(s)	395, 613, 861
PspN4I	GGNNCC	2 cut(s)	242, 622
PspPI	GGNCC	3 cut(s)	186, 292, 620
PstNI	CAGNNNCTG	1 cut(s)	73
PsuI	RGATCY	1 cut(s)	712
PsyI	GACNNNGTC	1 cut(s)	83
RsaI	GTAC	2 cut(s)	512, 571
RsaNI	GTAC	2 cut(s)	511, 570
RseI	CAYNNNNRTG	1 cut(s)	366
SacI	GAGCTC	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	8 cut(s)	409, 414, 619, 814, 833, 870, 879, 882
Sau3AI	GATC	2 cut(s)	492, 712
Sau96I	GGNCC	3 cut(s)	186, 292, 620
SchI	GAGTC	1 cut(s)	793
ScrFI	CCNGG	5 cut(s)	189, 291, 397, 615, 863
SduI	GDGCHC	1 cut(s)	231
SfuI	TTCGAA	1 cut(s)	21
SmiMI	CAYNNNNRTG	1 cut(s)	366
Sse9I	AATT	4 cut(s)	117, 175, 325, 743
SsiI	CCGC	8 cut(s)	408, 413, 618, 852, 870, 876, 879, 882
SspMI	CTAG	2 cut(s)	504, 662
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	5 cut(s)	187, 289, 395, 613, 861
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	3 cut(s)	98, 530, 628
TaiI	ACGT	3 cut(s)	87, 690, 804
TaqI	TCGA	4 cut(s)	16, 21, 365, 452
TasI	AATT	4 cut(s)	117, 175, 325, 743
TatI	WGTACW	1 cut(s)	510
TauI	GCSGC	6 cut(s)	411, 416, 621, 872, 881, 884
TfiI	GAWTC	3 cut(s)	18, 70, 776
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	5 cut(s)	276, 409, 535, 595, 631
TseFI	GTSAC	1 cut(s)	267
TseI	GCWGC	2 cut(s)	813, 832
Tsp45I	GTSAC	1 cut(s)	267
TspDTI	ATGAA	5 cut(s)	50, 234, 694, 735, 806
TspRI	CASTG	5 cut(s)	276, 409, 535, 595, 631
Tth111I	GACNNNGTC	1 cut(s)	83
XapI	RAATTY	3 cut(s)	117, 325, 743
XmnI	GAANNNNTTC	3 cut(s)	118, 546, 701
XspI	CTAG	2 cut(s)	504, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.