Rh4AG030400
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0004526
Physical Location & Seq
Forward (+)
6301531 .. 6303026
1496 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG030400.1

Sequence Viewer

Length: 579 bp
ATGCACAAACTCGTAGGCAACAGGTGGTCATTGATAGCAGGAAGGATTCCTGGCCGAACAGACAATGAAATAAAAAACTACTGGAACTCCACTCTAAGGAAGAAGCTCGCAGAACAGAAAGAAAAGGAATCAGAAGTGTCGAGAAACGAGATGATCAAGGAGAACTTGCCATGCCCCGTTGAGGACGATGGTAATCAACATTTGACCAAATGCGATGTAGTTGTTGGCGGAGGAGGAGGATTGATGTGTATTGCCTGTAATGTTAATGAAGAAGAAGATCATCAGCGTCGTTGTCTTGGCTGTACTAGTACTGATACTACTATACTGAGTCCCAGAGTGGGAGACGGAACCGGAGGCGGGGCAAACAATAATATCGAACCAGCTGGGGATGATCTCAATTATAACGCTATGACCTGGAACGATTCGATAATGGATTTGAATGGAGGCCAACTCTACATGTCGGAATTCCTCCAAACTGAATTTTCGAAGTTTTGGGAAGAAACAGATAGGTTCATGAATTTTGAAGTCGGAGGTTGCAGCACCATTAATCATGAGTTGCCAAATAATTGGGATGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

192

Amino Acids

21.45

Weight (kDa)

4.68

Isoelectric Point (pI)

57.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 2 - 31 9.2e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 402
AciI CCGC 2 cut(s) 228, 357
AcoI YGGCCR 1 cut(s) 52
AcsI RAATTY 3 cut(s) 464, 479, 517
AfaI GTAC 2 cut(s) 304, 310
AfiI CCNNNNNNNGG 4 cut(s) 96, 181, 338, 357
AflIII ACRYGT 1 cut(s) 456
AgsI TTSAA 2 cut(s) 439, 524
AhlI ACTAGT 1 cut(s) 305
AjnI CCWGG 2 cut(s) 49, 413
AluBI AGCT 2 cut(s) 106, 383
AluI AGCT 2 cut(s) 106, 383
Alw26I GTCTC 1 cut(s) 336
AoxI GGCC 2 cut(s) 52, 445
ApeKI GCWGC 1 cut(s) 537
ApoI RAATTY 3 cut(s) 464, 479, 517
AseI ATTAAT 1 cut(s) 546
AsuII TTCGAA 1 cut(s) 485
BbvI GCAGC 1 cut(s) 549
BccI CCATC 2 cut(s) 182, 566
BciT130I CCWGG 2 cut(s) 51, 415
BclI TGATCA 1 cut(s) 153
BcoDI GTCTC 1 cut(s) 336
BcuI ACTAGT 1 cut(s) 305
BfaI CTAG 1 cut(s) 306
BisI GCNGC 1 cut(s) 538
BlsI GCNGC 1 cut(s) 539
BmcAI AGTACT 1 cut(s) 310
Bme1390I CCNGG 2 cut(s) 51, 415
BmiI GGNNCC 1 cut(s) 349
BmrFI CCNGG 2 cut(s) 51, 415
BplI GAGNNNNNCTC 2 cut(s) 435, 467
Bpu14I TTCGAA 1 cut(s) 485
BsaBI GATNNNNATC 1 cut(s) 192
BsaWI WCCGGW 1 cut(s) 350
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bsc4I CCNNNNNNNGG 4 cut(s) 96, 181, 338, 357
Bse1I ACTGG 1 cut(s) 86
Bse8I GATNNNNATC 1 cut(s) 192
BseBI CCWGG 2 cut(s) 51, 415
BseGI GGATG 2 cut(s) 394, 577
BseJI GATNNNNATC 1 cut(s) 192
BseLI CCNNNNNNNGG 4 cut(s) 96, 181, 338, 357
BseMII CTCAG 1 cut(s) 317
BseNI ACTGG 1 cut(s) 86
BseRI GAGGAG 2 cut(s) 246, 249
BseXI GCAGC 1 cut(s) 549
BseYI CCCAGC 1 cut(s) 383
BshFI GGCC 2 cut(s) 54, 447
BsiSI CCGG 1 cut(s) 351
BslFI GGGAC 1 cut(s) 315
BslI CCNNNNNNNGG 4 cut(s) 96, 181, 338, 357
BsmAI GTCTC 1 cut(s) 336
BsmBI CGTCTC 1 cut(s) 336
BsmFI GGGAC 1 cut(s) 315
BsnI GGCC 2 cut(s) 54, 447
Bsp119I TTCGAA 1 cut(s) 485
Bsp143I GATC 3 cut(s) 153, 277, 391
BspACI CCGC 2 cut(s) 228, 357
BspANI GGCC 2 cut(s) 54, 447
BspCNI CTCAG 1 cut(s) 318
BspHI TCATGA 2 cut(s) 513, 550
BspLI GGNNCC 1 cut(s) 349
BspT104I TTCGAA 1 cut(s) 485
BsrI ACTGG 1 cut(s) 86
BssMI GATC 3 cut(s) 153, 277, 391
Bst2UI CCWGG 2 cut(s) 51, 415
BstBI TTCGAA 1 cut(s) 485
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 2 cut(s) 95, 326
BstF5I GGATG 2 cut(s) 394, 577
BstKTI GATC 3 cut(s) 156, 280, 394
BstMAI GTCTC 1 cut(s) 336
BstMBI GATC 3 cut(s) 153, 277, 391
BstNI CCWGG 2 cut(s) 51, 415
BstNSI RCATGY 1 cut(s) 460
BstSCI CCNGG 2 cut(s) 49, 413
BstV1I GCAGC 1 cut(s) 549
BstXI CCANNNNNNTGG 1 cut(s) 567
BsuRI GGCC 2 cut(s) 54, 447
BtgZI GCGATG 1 cut(s) 228
BtsCI GGATG 2 cut(s) 394, 577
Cac8I GCNNGC 1 cut(s) 108
CciI TCATGA 2 cut(s) 513, 550
CseI GACGC 1 cut(s) 275
Csp6I GTAC 2 cut(s) 303, 309
CviAII CATG 4 cut(s) 171, 457, 514, 551
CviJI RGCY 6 cut(s) 54, 106, 300, 383, 447, 576
CviKI_1 RGCY 6 cut(s) 54, 106, 300, 383, 447, 576
CviQI GTAC 2 cut(s) 303, 309
DdeI CTNAG 2 cut(s) 95, 326
DpnI GATC 3 cut(s) 155, 279, 393
DpnII GATC 3 cut(s) 153, 277, 391
EaeI YGGCCR 1 cut(s) 52
EciI GGCGGA 1 cut(s) 243
EcoRI GAATTC 1 cut(s) 464
EcoRII CCWGG 2 cut(s) 49, 413
Esp3I CGTCTC 1 cut(s) 336
FaeI CATG 4 cut(s) 174, 460, 517, 554
FaiI YATR 7 cut(s) 172, 323, 402, 410, 458, 515, 552
FalI AAGNNNNNCTT 2 cut(s) 149, 181
FaqI GGGAC 1 cut(s) 315
FatI CATG 4 cut(s) 170, 456, 513, 550
FauI CCCGC 1 cut(s) 350
FbaI TGATCA 1 cut(s) 153
Fnu4HI GCNGC 1 cut(s) 538
FokI GGATG 1 cut(s) 401
Fsp4HI GCNGC 1 cut(s) 538
FspBI CTAG 1 cut(s) 306
GluI GCNGC 1 cut(s) 538
GsaI CCCAGC 1 cut(s) 387
HaeIII GGCC 2 cut(s) 54, 447
HapII CCGG 1 cut(s) 351
HgaI GACGC 1 cut(s) 275
Hin1II CATG 4 cut(s) 174, 460, 517, 554
HinfI GANTC 4 cut(s) 46, 128, 328, 422
HpaII CCGG 1 cut(s) 351
Hpy188I TCNGA 3 cut(s) 133, 463, 530
Hpy188III TCNNGA 3 cut(s) 141, 514, 551
Hpy99I CGWCG 1 cut(s) 291
HpyAV CCTTC 1 cut(s) 36
HpyCH4V TGCA 2 cut(s) 4, 537
HpyF3I CTNAG 2 cut(s) 95, 326
Hsp92II CATG 4 cut(s) 174, 460, 517, 554
Ksp22I TGATCA 1 cut(s) 153
Kzo9I GATC 3 cut(s) 153, 277, 391
Lsp1109I GCAGC 1 cut(s) 549
MaeI CTAG 1 cut(s) 306
MalI GATC 3 cut(s) 155, 279, 393
MboI GATC 3 cut(s) 153, 277, 391
MboII GAAGA 5 cut(s) 112, 281, 284, 287, 509
MluCI AATT 5 cut(s) 397, 464, 479, 517, 565
MlyI GAGTC 1 cut(s) 337
MmeI TCCRAC 2 cut(s) 441, 508
MnlI CCTC 8 cut(s) 175, 224, 227, 230, 347, 437, 479, 524
MseI TTAA 2 cut(s) 264, 546
MspA1I CMGCKG 1 cut(s) 383
MspI CCGG 1 cut(s) 351
MspR9I CCNGG 2 cut(s) 51, 415
MvaI CCWGG 2 cut(s) 51, 415
NdeII GATC 3 cut(s) 153, 277, 391
NlaIII CATG 4 cut(s) 174, 460, 517, 554
NlaIV GGNNCC 1 cut(s) 349
NspI RCATGY 1 cut(s) 460
NspV TTCGAA 1 cut(s) 485
PagI TCATGA 2 cut(s) 513, 550
PciI ACATGT 1 cut(s) 456
PfeI GAWTC 3 cut(s) 46, 128, 422
PkrI GCNGC 1 cut(s) 539
PleI GAGTC 1 cut(s) 336
PpsI GAGTC 1 cut(s) 336
PscI ACATGT 1 cut(s) 456
PshBI ATTAAT 1 cut(s) 546
PsiI TTATAA 1 cut(s) 402
Psp6I CCWGG 2 cut(s) 49, 413
PspFI CCCAGC 1 cut(s) 383
PspGI CCWGG 2 cut(s) 49, 413
PspN4I GGNNCC 1 cut(s) 349
PvuII CAGCTG 1 cut(s) 383
RsaI GTAC 2 cut(s) 304, 310
RsaNI GTAC 2 cut(s) 303, 309
SaqAI TTAA 2 cut(s) 264, 546
SatI GCNGC 1 cut(s) 538
Sau3AI GATC 3 cut(s) 153, 277, 391
ScaI AGTACT 1 cut(s) 310
SchI GAGTC 1 cut(s) 337
ScrFI CCNGG 2 cut(s) 51, 415
SetI ASST 6 cut(s) 26, 108, 385, 416, 512, 535
SfuI TTCGAA 1 cut(s) 485
SpeI ACTAGT 1 cut(s) 305
Sse9I AATT 5 cut(s) 397, 464, 479, 517, 565
SsiI CCGC 2 cut(s) 228, 357
SspMI CTAG 1 cut(s) 306
StyD4I CCNGG 2 cut(s) 49, 413
TaqI TCGA 4 cut(s) 140, 375, 425, 485
TasI AATT 5 cut(s) 397, 464, 479, 517, 565
TatI WGTACW 2 cut(s) 302, 308
TfiI GAWTC 3 cut(s) 46, 128, 422
Tru1I TTAA 2 cut(s) 264, 546
Tru9I TTAA 2 cut(s) 264, 546
TseI GCWGC 1 cut(s) 537
TspDTI ATGAA 4 cut(s) 81, 282, 502, 530
TspGWI ACGGA 1 cut(s) 360
VspI ATTAAT 1 cut(s) 546
XapI RAATTY 3 cut(s) 464, 479, 517
XceI RCATGY 1 cut(s) 460
XspI CTAG 1 cut(s) 306
ZrmI AGTACT 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.