Rh4CG033000
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0004526
Physical Location & Seq
Forward (+)
6585406 .. 6587059
1654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG033000.1

Sequence Viewer

Length: 579 bp
ATGTATTTGTTTTGCAGGTGGTCATTGATAGCAGGAAGGATTCCGGACCGAACAGACAACGAAATAAAAAACTACTGGAACTCCACTCTAAGGAAGAAGCTGGCAGAAGAAAAAGAAAAGGAATCAGAAGTGTCGAGAAACGAGATGATCAAGGAGACCTTGCCATCCCCCGTTGAGGACTATGGTCATCAACATTTGACCAAATGCGATGTAGTTCTTGGCGGAGGAGGAGGATTGATGTGTTTTGCCAGTAATGTTAATGTAGAAGAAGATCATCAGCGTCGTTGTCTTGGCGGTACTAGTACCGATACTACTATTCTGAGTCCCAGAGTGGAAGTGGGAGTCGGAACCGGAGGCGGGGCAAACAATAATGTCGAACCAACTGGGGATGATCTCAATTATAACGCTATGACCTGGAACGATTCGTTAATGGATTTGAATGGAGGCCAACTCTACATGTCTGAATTCCTCCAAACTGACTTTTCGAAGTTTTGGGAAGAAACAGATAGGTTCATGAATTTTGAAGTCGGAGGTTGCAGCACCATTAATCATGAGTTGCCAAATAATTGGGATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

192

Amino Acids

21.6

Weight (kDa)

4.62

Isoelectric Point (pI)

46.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 6 - 29 1.9e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 402
AarI CACCTGC 1 cut(s) 6
Acc36I ACCTGC 1 cut(s) 6
AccIII TCCGGA 1 cut(s) 43
AciI CCGC 3 cut(s) 222, 294, 357
AcsI RAATTY 2 cut(s) 464, 517
AfaI GTAC 2 cut(s) 298, 304
AfiI CCNNNNNNNGG 3 cut(s) 90, 175, 357
AflIII ACRYGT 1 cut(s) 456
AgsI TTSAA 2 cut(s) 439, 524
AhlI ACTAGT 1 cut(s) 299
AjnI CCWGG 1 cut(s) 413
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
Alw26I GTCTC 1 cut(s) 149
Aor13HI TCCGGA 1 cut(s) 43
AoxI GGCC 1 cut(s) 445
ApeKI GCWGC 1 cut(s) 537
ApoI RAATTY 2 cut(s) 464, 517
AseI ATTAAT 1 cut(s) 546
AspS9I GGNCC 1 cut(s) 46
AsuII TTCGAA 1 cut(s) 485
AvaII GGWCC 1 cut(s) 46
BbvI GCAGC 1 cut(s) 549
BccI CCATC 2 cut(s) 172, 566
BciT130I CCWGG 1 cut(s) 415
BclI TGATCA 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 149
BcuI ACTAGT 1 cut(s) 299
BfaI CTAG 1 cut(s) 300
BfuAI ACCTGC 1 cut(s) 6
BisI GCNGC 1 cut(s) 538
BlsI GCNGC 1 cut(s) 539
Bme1390I CCNGG 1 cut(s) 415
Bme18I GGWCC 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 1 cut(s) 349
BmrFI CCNGG 1 cut(s) 415
BmrI ACTGGG 1 cut(s) 393
BmuI ACTGGG 1 cut(s) 393
BoxI GACNNNNGTC 1 cut(s) 183
BplI GAGNNNNNCTC 2 cut(s) 435, 467
Bpu14I TTCGAA 1 cut(s) 485
BsaI GGTCTC 1 cut(s) 149
BsaWI WCCGGW 2 cut(s) 43, 350
BsaXI ACNNNNNCTCC 2 cut(s) 65, 95
Bsc4I CCNNNNNNNGG 3 cut(s) 90, 175, 357
Bse1I ACTGG 3 cut(s) 80, 249, 388
BseAI TCCGGA 1 cut(s) 43
BseBI CCWGG 1 cut(s) 415
BseGI GGATG 3 cut(s) 164, 394, 577
BseLI CCNNNNNNNGG 3 cut(s) 90, 175, 357
BseMII CTCAG 1 cut(s) 311
BseNI ACTGG 3 cut(s) 80, 249, 388
BseRI GAGGAG 2 cut(s) 240, 243
BseXI GCAGC 1 cut(s) 549
BshFI GGCC 1 cut(s) 447
BsiSI CCGG 2 cut(s) 44, 351
BslFI GGGAC 1 cut(s) 309
BslI CCNNNNNNNGG 3 cut(s) 90, 175, 357
BsmAI GTCTC 1 cut(s) 149
BsmFI GGGAC 1 cut(s) 309
BsnI GGCC 1 cut(s) 447
Bso31I GGTCTC 1 cut(s) 149
Bsp119I TTCGAA 1 cut(s) 485
Bsp13I TCCGGA 1 cut(s) 43
Bsp143I GATC 3 cut(s) 147, 271, 391
BspACI CCGC 3 cut(s) 222, 294, 357
BspANI GGCC 1 cut(s) 447
BspCNI CTCAG 1 cut(s) 312
BspEI TCCGGA 1 cut(s) 43
BspHI TCATGA 2 cut(s) 513, 550
BspLI GGNNCC 1 cut(s) 349
BspMI ACCTGC 1 cut(s) 6
BspT104I TTCGAA 1 cut(s) 485
BspTNI GGTCTC 1 cut(s) 149
BsrI ACTGG 3 cut(s) 80, 249, 388
BssMI GATC 3 cut(s) 147, 271, 391
Bst2UI CCWGG 1 cut(s) 415
BstBI TTCGAA 1 cut(s) 485
BstC8I GCNNGC 1 cut(s) 102
BstDEI CTNAG 2 cut(s) 89, 320
BstF5I GGATG 3 cut(s) 164, 394, 577
BstKTI GATC 3 cut(s) 150, 274, 394
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 3 cut(s) 147, 271, 391
BstNI CCWGG 1 cut(s) 415
BstNSI RCATGY 1 cut(s) 460
BstPAI GACNNNNGTC 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 413
BstV1I GCAGC 1 cut(s) 549
BstXI CCANNNNNNTGG 1 cut(s) 567
BsuRI GGCC 1 cut(s) 447
BtgZI GCGATG 1 cut(s) 222
BtsCI GGATG 3 cut(s) 164, 394, 577
BveI ACCTGC 1 cut(s) 6
Cac8I GCNNGC 1 cut(s) 102
CciI TCATGA 2 cut(s) 513, 550
Cfr13I GGNCC 1 cut(s) 46
CpoI CGGWCCG 1 cut(s) 46
CseI GACGC 1 cut(s) 269
Csp6I GTAC 2 cut(s) 297, 303
CspI CGGWCCG 1 cut(s) 46
CviAII CATG 3 cut(s) 457, 514, 551
CviJI RGCY 2 cut(s) 100, 447
CviKI_1 RGCY 2 cut(s) 100, 447
CviQI GTAC 2 cut(s) 297, 303
DdeI CTNAG 2 cut(s) 89, 320
DpnI GATC 3 cut(s) 149, 273, 393
DpnII GATC 3 cut(s) 147, 271, 391
EciI GGCGGA 1 cut(s) 237
Eco31I GGTCTC 1 cut(s) 149
Eco47I GGWCC 1 cut(s) 46
EcoRI GAATTC 1 cut(s) 464
EcoRII CCWGG 1 cut(s) 413
FaeI CATG 3 cut(s) 460, 517, 554
FaiI YATR 6 cut(s) 183, 402, 410, 458, 515, 552
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FaqI GGGAC 1 cut(s) 309
FatI CATG 3 cut(s) 456, 513, 550
FauI CCCGC 1 cut(s) 350
FbaI TGATCA 1 cut(s) 147
Fnu4HI GCNGC 1 cut(s) 538
FokI GGATG 2 cut(s) 151, 401
Fsp4HI GCNGC 1 cut(s) 538
FspBI CTAG 1 cut(s) 300
GluI GCNGC 1 cut(s) 538
HaeIII GGCC 1 cut(s) 447
HapII CCGG 2 cut(s) 44, 351
HgaI GACGC 1 cut(s) 269
Hin1II CATG 3 cut(s) 460, 517, 554
HinfI GANTC 5 cut(s) 40, 122, 322, 342, 422
HpaII CCGG 2 cut(s) 44, 351
Hpy188I TCNGA 5 cut(s) 127, 321, 347, 463, 530
Hpy188III TCNNGA 4 cut(s) 44, 135, 514, 551
Hpy99I CGWCG 1 cut(s) 285
HpyAV CCTTC 1 cut(s) 30
HpyCH4V TGCA 2 cut(s) 15, 537
HpyF3I CTNAG 2 cut(s) 89, 320
Hsp92II CATG 3 cut(s) 460, 517, 554
Kpn2I TCCGGA 1 cut(s) 43
Ksp22I TGATCA 1 cut(s) 147
Kzo9I GATC 3 cut(s) 147, 271, 391
Lsp1109I GCAGC 1 cut(s) 549
MaeI CTAG 1 cut(s) 300
MalI GATC 3 cut(s) 149, 273, 393
MboI GATC 3 cut(s) 147, 271, 391
MboII GAAGA 5 cut(s) 106, 119, 278, 281, 509
MluCI AATT 4 cut(s) 397, 464, 517, 565
MlyI GAGTC 2 cut(s) 331, 351
MmeI TCCRAC 2 cut(s) 325, 508
MnlI CCTC 8 cut(s) 169, 218, 221, 224, 347, 437, 479, 524
MroI TCCGGA 1 cut(s) 43
MseI TTAA 4 cut(s) 258, 428, 546, 577
MspI CCGG 2 cut(s) 44, 351
MspR9I CCNGG 1 cut(s) 415
MvaI CCWGG 1 cut(s) 415
NdeII GATC 3 cut(s) 147, 271, 391
NlaIII CATG 3 cut(s) 460, 517, 554
NlaIV GGNNCC 1 cut(s) 349
NspI RCATGY 1 cut(s) 460
NspV TTCGAA 1 cut(s) 485
PagI TCATGA 2 cut(s) 513, 550
PaqCI CACCTGC 1 cut(s) 6
PciI ACATGT 1 cut(s) 456
PfeI GAWTC 3 cut(s) 40, 122, 422
PkrI GCNGC 1 cut(s) 539
PleI GAGTC 2 cut(s) 330, 350
PpsI GAGTC 2 cut(s) 330, 350
PscI ACATGT 1 cut(s) 456
PshAI GACNNNNGTC 1 cut(s) 183
PshBI ATTAAT 1 cut(s) 546
PsiI TTATAA 1 cut(s) 402
Psp6I CCWGG 1 cut(s) 413
PspGI CCWGG 1 cut(s) 413
PspN4I GGNNCC 1 cut(s) 349
PspPI GGNCC 1 cut(s) 46
RsaI GTAC 2 cut(s) 298, 304
RsaNI GTAC 2 cut(s) 297, 303
Rsr2I CGGWCCG 1 cut(s) 46
RsrII CGGWCCG 1 cut(s) 46
SaqAI TTAA 4 cut(s) 258, 428, 546, 577
SatI GCNGC 1 cut(s) 538
Sau3AI GATC 3 cut(s) 147, 271, 391
Sau96I GGNCC 1 cut(s) 46
SchI GAGTC 2 cut(s) 331, 351
ScrFI CCNGG 1 cut(s) 415
SetI ASST 6 cut(s) 20, 102, 161, 416, 512, 535
SfuI TTCGAA 1 cut(s) 485
SinI GGWCC 1 cut(s) 46
SpeI ACTAGT 1 cut(s) 299
Sse9I AATT 4 cut(s) 397, 464, 517, 565
SsiI CCGC 3 cut(s) 222, 294, 357
SspMI CTAG 1 cut(s) 300
StyD4I CCNGG 1 cut(s) 413
TaqI TCGA 3 cut(s) 134, 375, 485
TaqII GACCGA 1 cut(s) 63
TasI AATT 4 cut(s) 397, 464, 517, 565
TfiI GAWTC 3 cut(s) 40, 122, 422
Tru1I TTAA 4 cut(s) 258, 428, 546, 577
Tru9I TTAA 4 cut(s) 258, 428, 546, 577
TseI GCWGC 1 cut(s) 537
TspDTI ATGAA 2 cut(s) 502, 530
VpaK11BI GGWCC 1 cut(s) 46
VspI ATTAAT 1 cut(s) 546
XapI RAATTY 2 cut(s) 464, 517
XceI RCATGY 1 cut(s) 460
XcmI CCANNNNNNNNNTGG 1 cut(s) 334
XspI CTAG 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.