Rh5BG141600
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0004526
Physical Location & Seq
Forward (+)
14670599 .. 14672188
1590 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG141600.1

Sequence Viewer

Length: 567 bp
ATGCACACACTCTTAGGCAACAGGTGGTCATTGATAGCAGGAAGGATTCCGGGCCGAACTGACAATGAAATAAAGAACTACTGGAATTCCATTCTAAGGAAGAACGTGGGAGAAGAAAGAGAGAGAGAATCAGAAGTGTCGAGAAACGAGATGATCAAGGAGAACTTGCCATCCCTCGTTGACGACGATGGTCATCCACATTTGACCAAATGCGATGAAGTTCTTGGAGGAGGAGGAGGATTGGTGTGTTTTGCCAGCGATGTTAATGTAGAAGAAGACCACCGGCGTCATTGTCTTGGTGGTACTAGTACCGATACTACTACACTGAGTCCCGGAGTGGGAGTCGAAATCGGAGGCGGGGCAAACAATGATATTCAACCAACAGGAGATGATCTCAATTATAACGCTATGACCTGGAAAGATTCGATAATGGATCTGAATGGAGGCCAACTCGACATATCTGAATTCCTCCAAAGTGACTTTTCGACGTTTTGGGATTCAGATGGGCTCATGAATTTTGAAATCGGAGGTTGCAGCACCATGAATTATGAGTTGCCAAATAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

188

Amino Acids

20.7

Weight (kDa)

4.41

Isoelectric Point (pI)

46.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 2 - 32 7.5e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 402
AciI CCGC 1 cut(s) 357
AclWI GGATC 1 cut(s) 441
AcsI RAATTY 3 cut(s) 85, 464, 514
AcyI GRCGYC 1 cut(s) 286
AfaI GTAC 2 cut(s) 304, 310
AfiI CCNNNNNNNGG 2 cut(s) 96, 338
AgsI TTSAA 2 cut(s) 377, 521
AhlI ACTAGT 1 cut(s) 305
AjnI CCWGG 1 cut(s) 413
AloI GAACNNNNNNTCC 2 cut(s) 155, 187
AlwI GGATC 1 cut(s) 441
AoxI GGCC 2 cut(s) 52, 445
ApeKI GCWGC 1 cut(s) 534
ApoI RAATTY 3 cut(s) 85, 464, 514
AspS9I GGNCC 1 cut(s) 52
AsuC2I CCSGG 2 cut(s) 51, 333
BanII GRGCYC 1 cut(s) 510
BbsI GAAGAC 1 cut(s) 282
BbvI GCAGC 1 cut(s) 546
BccI CCATC 3 cut(s) 178, 182, 497
BciT130I CCWGG 1 cut(s) 415
BclI TGATCA 1 cut(s) 153
BcnI CCSGG 2 cut(s) 51, 333
BcuI ACTAGT 1 cut(s) 305
BfaI CTAG 1 cut(s) 306
BisI GCNGC 1 cut(s) 535
BlsI GCNGC 1 cut(s) 536
Bme1390I CCNGG 3 cut(s) 51, 333, 415
BmgT120I GGNCC 1 cut(s) 52
BmrFI CCNGG 3 cut(s) 51, 333, 415
BoxI GACNNNNGTC 1 cut(s) 189
BpiI GAAGAC 1 cut(s) 282
BplI GAGNNNNNCTC 4 cut(s) 378, 410, 435, 467
BpuMI CCSGG 2 cut(s) 51, 333
BsaBI GATNNNNATC 1 cut(s) 192
BsaHI GRCGYC 1 cut(s) 286
BsaXI ACNNNNNCTCC 4 cut(s) 228, 258, 327, 357
Bsc4I CCNNNNNNNGG 2 cut(s) 96, 338
Bse118I RCCGGY 1 cut(s) 282
Bse1I ACTGG 1 cut(s) 86
Bse8I GATNNNNATC 1 cut(s) 192
BseBI CCWGG 1 cut(s) 415
BseGI GGATG 2 cut(s) 170, 193
BseJI GATNNNNATC 1 cut(s) 192
BseLI CCNNNNNNNGG 2 cut(s) 96, 338
BseMII CTCAG 1 cut(s) 317
BseNI ACTGG 1 cut(s) 86
BseRI GAGGAG 3 cut(s) 243, 246, 249
BseXI GCAGC 1 cut(s) 546
BshFI GGCC 2 cut(s) 54, 447
BsiSI CCGG 3 cut(s) 50, 283, 333
BslFI GGGAC 1 cut(s) 315
BslI CCNNNNNNNGG 2 cut(s) 96, 338
BsmFI GGGAC 1 cut(s) 315
BsnI GGCC 2 cut(s) 54, 447
Bsp1286I GDGCHC 1 cut(s) 510
Bsp143I GATC 3 cut(s) 153, 391, 433
BspACI CCGC 1 cut(s) 357
BspANI GGCC 2 cut(s) 54, 447
BspCNI CTCAG 1 cut(s) 318
BspHI TCATGA 1 cut(s) 510
BspPI GGATC 1 cut(s) 441
BsrFI RCCGGY 1 cut(s) 282
BsrI ACTGG 1 cut(s) 86
BssAI RCCGGY 1 cut(s) 282
BssMI GATC 3 cut(s) 153, 391, 433
BssNI GRCGYC 1 cut(s) 286
Bst2UI CCWGG 1 cut(s) 415
BstACI GRCGYC 1 cut(s) 286
BstC8I GCNNGC 1 cut(s) 256
BstDEI CTNAG 3 cut(s) 13, 95, 326
BstF5I GGATG 2 cut(s) 170, 193
BstKTI GATC 3 cut(s) 156, 394, 436
BstMBI GATC 3 cut(s) 153, 391, 433
BstNI CCWGG 1 cut(s) 415
BstPAI GACNNNNGTC 1 cut(s) 189
BstSCI CCNGG 3 cut(s) 49, 331, 413
BstV1I GCAGC 1 cut(s) 546
BstV2I GAAGAC 1 cut(s) 282
BstX2I RGATCY 1 cut(s) 433
BstYI RGATCY 1 cut(s) 433
BsuRI GGCC 2 cut(s) 54, 447
BtgZI GCGATG 2 cut(s) 228, 273
BtsCI GGATG 2 cut(s) 170, 193
BtsIMutI CAGTG 1 cut(s) 323
Cac8I GCNNGC 1 cut(s) 256
CciI TCATGA 1 cut(s) 510
Cfr10I RCCGGY 1 cut(s) 282
Cfr13I GGNCC 1 cut(s) 52
CseI GACGC 1 cut(s) 275
Csp6I GTAC 2 cut(s) 303, 309
CviAII CATG 2 cut(s) 511, 541
CviJI RGCY 3 cut(s) 54, 447, 508
CviKI_1 RGCY 3 cut(s) 54, 447, 508
CviQI GTAC 2 cut(s) 303, 309
DdeI CTNAG 3 cut(s) 13, 95, 326
DpnI GATC 3 cut(s) 155, 393, 435
DpnII GATC 3 cut(s) 153, 391, 433
Eco24I GRGCYC 1 cut(s) 510
EcoRI GAATTC 2 cut(s) 85, 464
EcoRII CCWGG 1 cut(s) 413
EcoT38I GRGCYC 1 cut(s) 510
FaeI CATG 2 cut(s) 514, 544
FaiI YATR 6 cut(s) 402, 410, 458, 512, 542, 549
FalI AAGNNNNNCTT 2 cut(s) 149, 181
FaqI GGGAC 1 cut(s) 315
FatI CATG 2 cut(s) 510, 540
FauI CCCGC 1 cut(s) 350
FbaI TGATCA 1 cut(s) 153
Fnu4HI GCNGC 1 cut(s) 535
FokI GGATG 2 cut(s) 157, 180
FriOI GRGCYC 1 cut(s) 510
Fsp4HI GCNGC 1 cut(s) 535
FspBI CTAG 1 cut(s) 306
GluI GCNGC 1 cut(s) 535
HaeIII GGCC 2 cut(s) 54, 447
HapII CCGG 3 cut(s) 50, 283, 333
HgaI GACGC 1 cut(s) 275
Hin1I GRCGYC 1 cut(s) 286
Hin1II CATG 2 cut(s) 514, 544
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 6 cut(s) 46, 128, 328, 342, 422, 497
HpaII CCGG 3 cut(s) 50, 283, 333
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 6 cut(s) 133, 353, 438, 463, 502, 527
Hpy188III TCNNGA 2 cut(s) 141, 511
Hpy8I GTNNAC 1 cut(s) 181
Hpy99I CGWCG 2 cut(s) 188, 490
HpyAV CCTTC 1 cut(s) 36
HpyCH4IV ACGT 2 cut(s) 105, 488
HpyCH4V TGCA 2 cut(s) 4, 534
HpyF3I CTNAG 3 cut(s) 13, 95, 326
HpySE526I ACGT 2 cut(s) 105, 488
Hsp92I GRCGYC 1 cut(s) 286
Hsp92II CATG 2 cut(s) 514, 544
Ksp22I TGATCA 1 cut(s) 153
Kzo9I GATC 3 cut(s) 153, 391, 433
Lsp1109I GCAGC 1 cut(s) 546
MaeI CTAG 1 cut(s) 306
MaeII ACGT 2 cut(s) 105, 488
MaeIII GTNAC 1 cut(s) 476
MalI GATC 3 cut(s) 155, 393, 435
MboI GATC 3 cut(s) 153, 391, 433
MboII GAAGA 4 cut(s) 112, 125, 284, 287
MflI RGATCY 1 cut(s) 433
MhlI GDGCHC 1 cut(s) 510
MluCI AATT 6 cut(s) 85, 397, 464, 514, 544, 562
MlyI GAGTC 2 cut(s) 337, 351
MnlI CCTC 9 cut(s) 185, 221, 224, 227, 230, 347, 437, 479, 521
MseI TTAA 1 cut(s) 264
MspI CCGG 3 cut(s) 50, 283, 333
MspR9I CCNGG 3 cut(s) 51, 333, 415
MvaI CCWGG 1 cut(s) 415
NciI CCSGG 2 cut(s) 51, 333
NdeII GATC 3 cut(s) 153, 391, 433
NlaIII CATG 2 cut(s) 514, 544
NmuCI GTSAC 1 cut(s) 476
PagI TCATGA 1 cut(s) 510
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PfeI GAWTC 4 cut(s) 46, 128, 422, 497
PfoI TCCNGGA 1 cut(s) 331
PkrI GCNGC 1 cut(s) 536
PleI GAGTC 2 cut(s) 336, 350
PpsI GAGTC 2 cut(s) 336, 350
PshAI GACNNNNGTC 1 cut(s) 189
PsiI TTATAA 1 cut(s) 402
Psp6I CCWGG 1 cut(s) 413
PspGI CCWGG 1 cut(s) 413
PspPI GGNCC 1 cut(s) 52
PsuI RGATCY 1 cut(s) 433
RsaI GTAC 2 cut(s) 304, 310
RsaNI GTAC 2 cut(s) 303, 309
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 1 cut(s) 535
Sau3AI GATC 3 cut(s) 153, 391, 433
Sau96I GGNCC 1 cut(s) 52
SchI GAGTC 2 cut(s) 337, 351
ScrFI CCNGG 3 cut(s) 51, 333, 415
SduI GDGCHC 1 cut(s) 510
SetI ASST 5 cut(s) 26, 108, 416, 491, 532
SgrAI CRCCGGYG 1 cut(s) 282
SpeI ACTAGT 1 cut(s) 305
Sse9I AATT 6 cut(s) 85, 397, 464, 514, 544, 562
SsiI CCGC 1 cut(s) 357
SspMI CTAG 1 cut(s) 306
StyD4I CCNGG 3 cut(s) 49, 331, 413
TaiI ACGT 2 cut(s) 108, 491
TaqI TCGA 5 cut(s) 140, 345, 425, 453, 485
TasI AATT 6 cut(s) 85, 397, 464, 514, 544, 562
TfiI GAWTC 4 cut(s) 46, 128, 422, 497
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TscAI CASTG 1 cut(s) 330
TseFI GTSAC 1 cut(s) 476
TseI GCWGC 1 cut(s) 534
Tsp45I GTSAC 1 cut(s) 476
TspDTI ATGAA 4 cut(s) 81, 231, 527, 557
TspRI CASTG 1 cut(s) 330
XapI RAATTY 3 cut(s) 85, 464, 514
XspI CTAG 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.