FvH4_4g02400
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0004526
Physical Location & Seq
Forward (+)
2211204 .. 2212058
855 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g02400.t1

Sequence Viewer

Length: 564 bp
ATGCACAAGCTTGTAGGCAAAAGGTGGTCATTGATAGCAGGAAGAATTCCGGGTCGAACTGACAATGAAATAAAGAACTACTGGATCTCCACTCTAAGTAAGAAGCTGGCAGAAGAAAAAAGAAAGAAACCAGAAGTGCCGAGAAACGAGATTGCCAAGGAGAGCTTGCCATCCCCCATTGAGGTCGACGATGGTCATCCACATCCGACCATATGCAATGAAGTTCCTGGAGGAGGAGGAGGATTGATGTGTTTTGCCAGTAATGTTAATGTAGAAGAAGATCATCAGCATCAGAGTTCTGATACCGATAACAGTACTACAATGAGTGCCAGAGTGGGAGTCCGAATCAGAGGCGTGGCAAACAATGTTCAACCAACCGGGGACGATCTCAGTGATGACGCTATGCCCTGGAACGATTGGATAATGGATCTGAACGAAGGGCAACTCGACCTATCTGAATTTCTCCAAACTGATTTTTCGAACTTTTGGGAAGAATCAGATATGTTCATGAACTTTGAAGTCGGAGGTTGCAGCACCATTAACCATGAGTGGCCGAATAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

188

Amino Acids

21.0

Weight (kDa)

4.72

Isoelectric Point (pI)

46.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 2 - 30 1e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 186
AclWI GGATC 2 cut(s) 92, 435
AcoI YGGCCR 1 cut(s) 551
AcsI RAATTY 2 cut(s) 45, 458
AfaI GTAC 1 cut(s) 316
AfiI CCNNNNNNNGG 2 cut(s) 181, 233
AgsI TTSAA 2 cut(s) 371, 518
AjnI CCWGG 2 cut(s) 226, 407
AluBI AGCT 3 cut(s) 10, 106, 165
AluI AGCT 3 cut(s) 10, 106, 165
AlwI GGATC 2 cut(s) 92, 435
AoxI GGCC 1 cut(s) 551
ApeKI GCWGC 1 cut(s) 531
ApoI RAATTY 2 cut(s) 45, 458
AsuC2I CCSGG 2 cut(s) 51, 379
AsuII TTCGAA 1 cut(s) 479
BbvI GCAGC 1 cut(s) 543
BccI CCATC 2 cut(s) 178, 185
BciT130I CCWGG 2 cut(s) 228, 409
BcnI CCSGG 2 cut(s) 51, 379
BisI GCNGC 1 cut(s) 532
BlsI GCNGC 1 cut(s) 533
BmcAI AGTACT 1 cut(s) 316
Bme1390I CCNGG 4 cut(s) 51, 228, 379, 409
BmrFI CCNGG 4 cut(s) 51, 228, 379, 409
BmsI GCATC 1 cut(s) 298
BoxI GACNNNNGTC 1 cut(s) 192
BpmI CTGGAG 1 cut(s) 249
Bpu14I TTCGAA 1 cut(s) 479
BpuMI CCSGG 2 cut(s) 51, 379
BsaBI GATNNNNATC 1 cut(s) 195
BsaJI CCNNGG 3 cut(s) 156, 378, 407
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bsc4I CCNNNNNNNGG 2 cut(s) 181, 233
Bse1I ACTGG 2 cut(s) 86, 258
Bse3DI GCAATG 1 cut(s) 223
Bse8I GATNNNNATC 1 cut(s) 195
BseBI CCWGG 2 cut(s) 228, 409
BseDI CCNNGG 3 cut(s) 156, 378, 407
BseGI GGATG 3 cut(s) 170, 196, 202
BseJI GATNNNNATC 1 cut(s) 195
BseLI CCNNNNNNNGG 2 cut(s) 181, 233
BseMI GCAATG 1 cut(s) 223
BseMII CTCAG 1 cut(s) 403
BseNI ACTGG 2 cut(s) 86, 258
BseRI GAGGAG 3 cut(s) 246, 249, 252
BseXI GCAGC 1 cut(s) 543
BshFI GGCC 1 cut(s) 553
BsiSI CCGG 2 cut(s) 50, 378
BslFI GGGAC 1 cut(s) 395
BslI CCNNNNNNNGG 2 cut(s) 181, 233
BsmFI GGGAC 1 cut(s) 395
BsnI GGCC 1 cut(s) 553
Bsp119I TTCGAA 1 cut(s) 479
Bsp143I GATC 4 cut(s) 84, 280, 385, 427
BspANI GGCC 1 cut(s) 553
BspCNI CTCAG 1 cut(s) 402
BspHI TCATGA 1 cut(s) 507
BspPI GGATC 2 cut(s) 92, 435
BspT104I TTCGAA 1 cut(s) 479
BsrDI GCAATG 1 cut(s) 223
BsrI ACTGG 2 cut(s) 86, 258
BssECI CCNNGG 3 cut(s) 156, 378, 407
BssMI GATC 4 cut(s) 84, 280, 385, 427
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 2 cut(s) 228, 409
Bst4CI ACNGT 1 cut(s) 314
BstBI TTCGAA 1 cut(s) 479
BstC8I GCNNGC 2 cut(s) 108, 167
BstDEI CTNAG 2 cut(s) 95, 389
BstENI CCTNNNNNAGG 1 cut(s) 231
BstF5I GGATG 3 cut(s) 170, 196, 202
BstKTI GATC 4 cut(s) 87, 283, 388, 430
BstMBI GATC 4 cut(s) 84, 280, 385, 427
BstNI CCWGG 2 cut(s) 228, 409
BstPAI GACNNNNGTC 1 cut(s) 192
BstSCI CCNGG 4 cut(s) 49, 226, 377, 407
BstV1I GCAGC 1 cut(s) 543
BstX2I RGATCY 2 cut(s) 84, 427
BstYI RGATCY 2 cut(s) 84, 427
BsuRI GGCC 1 cut(s) 553
BtsCI GGATG 3 cut(s) 170, 196, 202
BtsIMutI CAGTG 1 cut(s) 397
Cac8I GCNNGC 2 cut(s) 108, 167
CciI TCATGA 1 cut(s) 507
CseI GACGC 1 cut(s) 407
Csp6I GTAC 1 cut(s) 315
CviAII CATG 2 cut(s) 508, 545
CviJI RGCY 4 cut(s) 10, 106, 165, 553
CviKI_1 RGCY 4 cut(s) 10, 106, 165, 553
CviQI GTAC 1 cut(s) 315
DdeI CTNAG 2 cut(s) 95, 389
DpnI GATC 4 cut(s) 86, 282, 387, 429
DpnII GATC 4 cut(s) 84, 280, 385, 427
EaeI YGGCCR 1 cut(s) 551
Eco130I CCWWGG 1 cut(s) 156
EcoNI CCTNNNNNAGG 1 cut(s) 231
EcoRI GAATTC 1 cut(s) 45
EcoRII CCWGG 2 cut(s) 226, 407
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 2 cut(s) 511, 548
FaiI YATR 6 cut(s) 212, 214, 404, 503, 509, 546
FalI AAGNNNNNCTT 2 cut(s) 149, 181
FaqI GGGAC 1 cut(s) 395
FatI CATG 2 cut(s) 507, 544
FauNDI CATATG 1 cut(s) 212
FblI GTMKAC 1 cut(s) 186
Fnu4HI GCNGC 1 cut(s) 532
FokI GGATG 3 cut(s) 157, 183, 189
Fsp4HI GCNGC 1 cut(s) 532
GluI GCNGC 1 cut(s) 532
GsuI CTGGAG 1 cut(s) 249
HaeIII GGCC 1 cut(s) 553
HapII CCGG 2 cut(s) 50, 378
HgaI GACGC 1 cut(s) 407
Hin1II CATG 2 cut(s) 511, 548
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 3 cut(s) 339, 345, 494
HpaII CCGG 2 cut(s) 50, 378
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 9 cut(s) 207, 294, 301, 344, 350, 432, 457, 499, 524
Hpy188III TCNNGA 1 cut(s) 508
Hpy8I GTNNAC 1 cut(s) 187
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 1 cut(s) 431
HpyCH4III ACNGT 1 cut(s) 314
HpyCH4V TGCA 3 cut(s) 4, 216, 531
HpyF3I CTNAG 2 cut(s) 95, 389
Hsp92II CATG 2 cut(s) 511, 548
Kzo9I GATC 4 cut(s) 84, 280, 385, 427
Lsp1109I GCAGC 1 cut(s) 543
LweI GCATC 1 cut(s) 298
MalI GATC 4 cut(s) 86, 282, 387, 429
MboI GATC 4 cut(s) 84, 280, 385, 427
MboII GAAGA 5 cut(s) 54, 125, 287, 290, 503
MflI RGATCY 2 cut(s) 84, 427
MluCI AATT 3 cut(s) 45, 458, 559
MlyI GAGTC 1 cut(s) 348
MmeI TCCRAC 2 cut(s) 230, 502
MnlI CCTC 7 cut(s) 175, 224, 227, 230, 233, 344, 518
MseI TTAA 2 cut(s) 267, 540
MspI CCGG 2 cut(s) 50, 378
MspR9I CCNGG 4 cut(s) 51, 228, 379, 409
MvaI CCWGG 2 cut(s) 228, 409
NciI CCSGG 2 cut(s) 51, 379
NdeI CATATG 1 cut(s) 212
NdeII GATC 4 cut(s) 84, 280, 385, 427
NlaIII CATG 2 cut(s) 511, 548
NmeAIII GCCGAG 1 cut(s) 165
NspV TTCGAA 1 cut(s) 479
PagI TCATGA 1 cut(s) 507
PfeI GAWTC 2 cut(s) 345, 494
PfoI TCCNGGA 1 cut(s) 226
PkrI GCNGC 1 cut(s) 533
PleI GAGTC 1 cut(s) 347
PpsI GAGTC 1 cut(s) 347
PshAI GACNNNNGTC 1 cut(s) 192
Psp6I CCWGG 2 cut(s) 226, 407
PspGI CCWGG 2 cut(s) 226, 407
PsuI RGATCY 2 cut(s) 84, 427
RsaI GTAC 1 cut(s) 316
RsaNI GTAC 1 cut(s) 315
SalI GTCGAC 1 cut(s) 185
SaqAI TTAA 2 cut(s) 267, 540
SatI GCNGC 1 cut(s) 532
Sau3AI GATC 4 cut(s) 84, 280, 385, 427
ScaI AGTACT 1 cut(s) 316
SchI GAGTC 1 cut(s) 348
ScrFI CCNGG 4 cut(s) 51, 228, 379, 409
SetI ASST 7 cut(s) 12, 26, 108, 167, 186, 453, 529
SfaNI GCATC 1 cut(s) 298
SfuI TTCGAA 1 cut(s) 479
Sse9I AATT 3 cut(s) 45, 458, 559
StyD4I CCNGG 4 cut(s) 49, 226, 377, 407
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 314
TaqI TCGA 4 cut(s) 55, 186, 447, 479
TasI AATT 3 cut(s) 45, 458, 559
TatI WGTACW 1 cut(s) 314
TfiI GAWTC 2 cut(s) 345, 494
Tru1I TTAA 2 cut(s) 267, 540
Tru9I TTAA 2 cut(s) 267, 540
TscAI CASTG 1 cut(s) 397
TseI GCWGC 1 cut(s) 531
TspDTI ATGAA 4 cut(s) 81, 234, 496, 524
TspRI CASTG 1 cut(s) 397
XagI CCTNNNNNAGG 1 cut(s) 231
XapI RAATTY 2 cut(s) 45, 458
XmiI GTMKAC 1 cut(s) 186
ZrmI AGTACT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.