Rorug03G0325700
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0004526
Physical Location & Seq
Reverse (-)
35883245 .. 35885481
2237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0325700.1

Sequence Viewer

Length: 918 bp
ATGGAAGCAATGGAGAAGCAATCAGATGGGGTTGGGAAATGGTTTGAAGACAAGCCATCAGAACAGTGGAGTAGTTCACATTTTAGAACCACTTCTAAATGTGACATCCTCCTAAAAAATTTATGTGAATTGTGGAATGCTTCTCTAGTTAGGCATAGGGATAAACTGATTTTGACCATGATGGAAGGGATGAGGATGGATTCCATGACAAGAATGGCTAACAAAAGGGTTGCCGGCACAAGACGGACCAATATGGTTGGCCCTCGAATTGCAAAAGTTATTGAGAAGATTGGCAAAAGAACTCATGAATATAGAGCACACATGTCTGGGGAGTTTTTGTACCAAGTGATTGGAGGCATGTACGGGAACAAGCATGCTGTTGACTTAGGCATGCACACATGCACATGCAGGAGGTGGCAATTAAGTGGAATTCCTTGTGTCCATGCAACATGTGCTATATTTGCAAAGAAACTGGAACCTAGCCTGTTTGTGGACAATTATTTGTTACCCTCTACTTATCTTGATGCATATAATCCTATCATCTACCCTATTGCTGGAGATGATGATTGGGAGCTGGTGGACTACCCAATTGCTCCTCCACCATACAAGAAACAAGCAGGGAGGCCTAAAATGAAGAGAATCAAAGAACCTGGAGAGGGAAAAGCATCACCTGCCCCTGATGCAAGCAAGATGTCTAGAAACCTTTATGGAACAAAGATGACCTACAAGAGAGGTTGCCCAACAATTAAGAATGAATCTCAACAGGGTGAAGGAAGCTCTAAGGGCAACAAAACACCAAAGAAGCAGCAGATTTGCCCTTTGTATACACACACACACACACACACATACATATATATATATATATATATATATACAACTGAGCTTGCCATTGTTCTTGTCTCTTACGTTTTTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

305

Amino Acids

34.78

Weight (kDa)

9.36

Isoelectric Point (pI)

47.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 127 - 149 8.9e-08 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 679
Acc36I ACCTGC 1 cut(s) 679
AccI GTMKAC 1 cut(s) 824
AcsI RAATTY 2 cut(s) 118, 429
AfaI GTAC 2 cut(s) 341, 362
AfiI CCNNNNNNNGG 3 cut(s) 490, 554, 656
AflIII ACRYGT 2 cut(s) 321, 449
AgsI TTSAA 1 cut(s) 47
AjnI CCWGG 1 cut(s) 649
AluBI AGCT 3 cut(s) 574, 777, 883
AluI AGCT 3 cut(s) 574, 777, 883
Alw21I GWGCWC 1 cut(s) 319
Alw26I GTCTC 1 cut(s) 904
AoxI GGCC 2 cut(s) 259, 623
ApeKI GCWGC 1 cut(s) 805
ApoI RAATTY 2 cut(s) 118, 429
Asp700I GAANNNNTTC 1 cut(s) 91
AspS9I GGNCC 2 cut(s) 246, 260
AsuHPI GGTGA 2 cut(s) 660, 779
AvaII GGWCC 1 cut(s) 246
BbsI GAAGAC 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 319
BbvI GCAGC 1 cut(s) 817
BccI CCATC 4 cut(s) 20, 64, 175, 190
BciT130I CCWGG 1 cut(s) 651
BcoDI GTCTC 1 cut(s) 904
BfaI CTAG 3 cut(s) 146, 480, 696
BfuAI ACCTGC 1 cut(s) 679
BisI GCNGC 1 cut(s) 806
BlsI GCNGC 1 cut(s) 807
Bme1390I CCNGG 1 cut(s) 651
Bme18I GGWCC 1 cut(s) 246
BmgT120I GGNCC 2 cut(s) 246, 260
BmiI GGNNCC 1 cut(s) 477
BmrFI CCNGG 1 cut(s) 651
BmsI GCATC 3 cut(s) 514, 670, 674
BpiI GAAGAC 1 cut(s) 54
BpmI CTGGAG 2 cut(s) 576, 672
BsaXI ACNNNNNCTCC 2 cut(s) 323, 353
Bsc4I CCNNNNNNNGG 3 cut(s) 490, 554, 656
Bse118I RCCGGY 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 477
Bse3DI GCAATG 1 cut(s) 15
BseBI CCWGG 1 cut(s) 651
BseGI GGATG 3 cut(s) 105, 195, 201
BseLI CCNNNNNNNGG 3 cut(s) 490, 554, 656
BseMI GCAATG 1 cut(s) 15
BseMII CTCAG 1 cut(s) 870
BseNI ACTGG 1 cut(s) 477
BseRI GAGGAG 1 cut(s) 585
BseXI GCAGC 1 cut(s) 817
BshFI GGCC 2 cut(s) 261, 625
BsiHKAI GWGCWC 1 cut(s) 319
BsiSI CCGG 1 cut(s) 234
BslI CCNNNNNNNGG 3 cut(s) 490, 554, 656
BsmAI GTCTC 1 cut(s) 904
BsmI GAATGC 1 cut(s) 142
BsnI GGCC 2 cut(s) 261, 625
Bsp1286I GDGCHC 1 cut(s) 319
BspANI GGCC 2 cut(s) 261, 625
BspCNI CTCAG 1 cut(s) 871
BspHI TCATGA 1 cut(s) 304
BspLI GGNNCC 1 cut(s) 477
BspMI ACCTGC 1 cut(s) 679
BsrDI GCAATG 1 cut(s) 15
BsrFI RCCGGY 1 cut(s) 233
BsrI ACTGG 1 cut(s) 477
BssAI RCCGGY 1 cut(s) 233
BssNAI GTATAC 1 cut(s) 825
Bst1107I GTATAC 1 cut(s) 825
Bst2UI CCWGG 1 cut(s) 651
Bst4CI ACNGT 1 cut(s) 66
Bst6I CTCTTC 1 cut(s) 629
BstAPI GCANNNNNTGC 2 cut(s) 452, 671
BstC8I GCNNGC 5 cut(s) 235, 375, 392, 685, 885
BstDEI CTNAG 3 cut(s) 385, 780, 879
BstF5I GGATG 3 cut(s) 105, 195, 201
BstMAI GTCTC 1 cut(s) 904
BstMWI GCNNNNNNNGC 5 cut(s) 452, 461, 671, 680, 783
BstNI CCWGG 1 cut(s) 651
BstNSI RCATGY 7 cut(s) 325, 361, 377, 394, 402, 408, 453
BstSCI CCNGG 1 cut(s) 649
BstV1I GCAGC 1 cut(s) 817
BstV2I GAAGAC 1 cut(s) 54
BstXI CCANNNNNNTGG 1 cut(s) 350
BstZ17I GTATAC 1 cut(s) 825
BsuRI GGCC 2 cut(s) 261, 625
BtsCI GGATG 3 cut(s) 105, 195, 201
BtsIMutI CAGTG 1 cut(s) 71
BveI ACCTGC 1 cut(s) 679
Cac8I GCNNGC 5 cut(s) 235, 375, 392, 685, 885
CciI TCATGA 1 cut(s) 304
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 2 cut(s) 246, 260
Csp6I GTAC 2 cut(s) 340, 361
CviJI RGCY 9 cut(s) 55, 218, 261, 483, 574, 625, 777, 883, 915
CviKI_1 RGCY 9 cut(s) 55, 218, 261, 483, 574, 625, 777, 883, 915
CviQI GTAC 2 cut(s) 340, 361
DdeI CTNAG 3 cut(s) 385, 780, 879
Eam1104I CTCTTC 1 cut(s) 629
EarI CTCTTC 1 cut(s) 629
Eco147I AGGCCT 1 cut(s) 625
Eco47I GGWCC 1 cut(s) 246
EcoRI GAATTC 1 cut(s) 429
EcoRII CCWGG 1 cut(s) 649
EcoT22I ATGCAT 1 cut(s) 529
FblI GTMKAC 1 cut(s) 824
Fnu4HI GCNGC 1 cut(s) 806
FokI GGATG 3 cut(s) 92, 202, 208
Fsp4HI GCNGC 1 cut(s) 806
FspBI CTAG 3 cut(s) 146, 480, 696
GluI GCNGC 1 cut(s) 806
GsuI CTGGAG 2 cut(s) 576, 672
HaeIII GGCC 2 cut(s) 261, 625
HapII CCGG 1 cut(s) 234
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HinfI GANTC 3 cut(s) 200, 639, 755
HpaII CCGG 1 cut(s) 234
HphI GGTGA 2 cut(s) 660, 779
Hpy166II GTNNAC 5 cut(s) 77, 382, 493, 580, 825
Hpy188I TCNGA 2 cut(s) 25, 61
Hpy188III TCNNGA 3 cut(s) 305, 521, 696
Hpy8I GTNNAC 5 cut(s) 77, 382, 493, 580, 825
HpyAV CCTTC 2 cut(s) 179, 764
HpyCH4III ACNGT 1 cut(s) 66
HpyCH4IV ACGT 1 cut(s) 906
HpyCH4V TGCA 8 cut(s) 272, 394, 402, 408, 446, 464, 527, 683
HpyF10VI GCNNNNNNNGC 5 cut(s) 452, 461, 671, 680, 783
HpyF3I CTNAG 3 cut(s) 385, 780, 879
HpySE526I ACGT 1 cut(s) 906
KroI GCCGGC 1 cut(s) 233
KroNI GCCGGC 1 cut(s) 235
LmnI GCTCC 2 cut(s) 571, 598
Lsp1109I GCAGC 1 cut(s) 817
LweI GCATC 3 cut(s) 514, 670, 674
MaeI CTAG 3 cut(s) 146, 480, 696
MaeII ACGT 1 cut(s) 906
MaeIII GTNAC 2 cut(s) 101, 504
MboII GAAGA 3 cut(s) 59, 298, 646
MfeI CAATTG 1 cut(s) 588
MhlI GDGCHC 1 cut(s) 319
MluCI AATT 8 cut(s) 118, 128, 267, 419, 429, 496, 588, 744
Mph1103I ATGCAT 1 cut(s) 529
MroNI GCCGGC 1 cut(s) 233
MroXI GAANNNNTTC 1 cut(s) 91
MseI TTAA 2 cut(s) 422, 747
MslI CAYNNNNRTG 1 cut(s) 403
MspI CCGG 1 cut(s) 234
MspR9I CCNGG 1 cut(s) 651
MunI CAATTG 1 cut(s) 588
Mva1269I GAATGC 1 cut(s) 142
MvaI CCWGG 1 cut(s) 651
MwoI GCNNNNNNNGC 5 cut(s) 452, 461, 671, 680, 783
NaeI GCCGGC 1 cut(s) 235
NgoMIV GCCGGC 1 cut(s) 233
NlaIV GGNNCC 1 cut(s) 477
NmuCI GTSAC 1 cut(s) 101
NsiI ATGCAT 1 cut(s) 529
NspI RCATGY 7 cut(s) 325, 361, 377, 394, 402, 408, 453
PaeI GCATGC 2 cut(s) 377, 394
PagI TCATGA 1 cut(s) 304
PaqCI CACCTGC 1 cut(s) 679
PceI AGGCCT 1 cut(s) 625
PciI ACATGT 2 cut(s) 321, 449
PctI GAATGC 1 cut(s) 142
PdiI GCCGGC 1 cut(s) 235
PdmI GAANNNNTTC 1 cut(s) 91
PfeI GAWTC 3 cut(s) 200, 639, 755
PkrI GCNGC 1 cut(s) 807
PscI ACATGT 2 cut(s) 321, 449
Psp6I CCWGG 1 cut(s) 649
PspGI CCWGG 1 cut(s) 649
PspN4I GGNNCC 1 cut(s) 477
PspPI GGNCC 2 cut(s) 246, 260
RsaI GTAC 2 cut(s) 341, 362
RsaNI GTAC 2 cut(s) 340, 361
RseI CAYNNNNRTG 1 cut(s) 403
SaqAI TTAA 2 cut(s) 422, 747
SatI GCNGC 1 cut(s) 806
Sau96I GGNCC 2 cut(s) 246, 260
ScrFI CCNGG 1 cut(s) 651
SduI GDGCHC 1 cut(s) 319
SfaNI GCATC 3 cut(s) 514, 670, 674
SinI GGWCC 1 cut(s) 246
SmiMI CAYNNNNRTG 1 cut(s) 403
SphI GCATGC 2 cut(s) 377, 394
Sse9I AATT 8 cut(s) 118, 128, 267, 419, 429, 496, 588, 744
SseBI AGGCCT 1 cut(s) 625
SspMI CTAG 3 cut(s) 146, 480, 696
StuI AGGCCT 1 cut(s) 625
StyD4I CCNGG 1 cut(s) 649
TaaI ACNGT 1 cut(s) 66
TaiI ACGT 1 cut(s) 909
TaqI TCGA 1 cut(s) 265
TasI AATT 8 cut(s) 118, 128, 267, 419, 429, 496, 588, 744
TfiI GAWTC 3 cut(s) 200, 639, 755
Tru1I TTAA 2 cut(s) 422, 747
Tru9I TTAA 2 cut(s) 422, 747
TscAI CASTG 1 cut(s) 71
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 1 cut(s) 805
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 3 cut(s) 321, 647, 768
TspGWI ACGGA 1 cut(s) 259
TspRI CASTG 1 cut(s) 71
VpaK11BI GGWCC 1 cut(s) 246
XapI RAATTY 2 cut(s) 118, 429
XbaI TCTAGA 1 cut(s) 695
XceI RCATGY 7 cut(s) 325, 361, 377, 394, 402, 408, 453
XcmI CCANNNNNNNNNTGG 2 cut(s) 63, 211
XmiI GTMKAC 1 cut(s) 824
XmnI GAANNNNTTC 1 cut(s) 91
XspI CTAG 3 cut(s) 146, 480, 696
Zsp2I ATGCAT 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.