Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0004526

Physical Location & Seq

Genomic Coordinates Forward (+)

66262621 .. 66264342

Gene Structure 1722 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG508800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGGAAGAAGCTCTCGCTTCGAAAAGGAGGGAATGAAGAAAGGAGCGTGGACCGCCCGAGAAGACCAGATTCTGATGGACTACGTCAAAAAGCACGGTGAAGGCAAATGGGGAAAAATTTCAAAAGAAACAGGCCTGAAAAGATGTGGGAAGAGTGTGAGACTTAGATGGTTGAATTATTTGAGGCCTGATATTAAGAGAGGCAACATTGCAGATGATGAAGAGGAGCTCATCATCAGGCTCCACAGACTTTTGGGCAACAGATGGTCATTGATAGCCGGAAGAATACCTGGCCGAACTGACAATGAGATTAAAAACTACTGGAATTCCACTCTAAGGAGGAAGCTACAGCAAGAAAATCACTTAAATGAGATCAAGGAGAACTCCTCATCCCCCAGCGGCAGCGGCGCCGCCGAGGACGACCCACATTCGAGCAAAAATAATGGAGGGGTTGGAGGAGGGATGGTCAAACCAACAAGCTCTTACTGCTTCACCAATCACAATGTTAAGAAAGAAGATCTTCAGCGTTATCATCTTGAAAGTACCACCACTACTACTACTACCAATAAAACAACATTTTTCTCCGGTGCCACCGTTGAAGCCGAAGCAAACAAGAATGATATAGAGCTAGCTGGAGACGACTTGTGCAATGATGTGACGTGGAATGATTTCATAATGGATCTAAATGAAGGTCAGTTAGACATATCTGAATTTCTCCAAAGACTTTTCAAAGCTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

246

Amino Acids

27.94

Weight (kDa)

8.33

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	8.6e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 75	2.7e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	71 - 111	5e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	72 - 120	6.6e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004526)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31070 FvH4_2g31070 FvH4_4g02400
rosa_chinensis	RchiOBHm_Chr4g0389841 RchiOBHm_Chr5g0019651 RchiOBHm_Chr6g0311731
rosa_laevigata	RLG00000009947 RLG00000010379
rosa_multiflora	Rmu_co8139852.1_g000001 Rmu_sc0002702.1_g000022 Rmu_sc0002888.1_g000030 Rmu_sc0030932.1_g000007
rosa_roxburghii	Rroxscaffold_1G00058440 Rroxscaffold_5G00335890 Rroxscaffold_5G00335920 Rroxscaffold_7G00157360
rosa_rugosa	Rorug03G0325700 Rorug03G0326000 Rorug03G0326100 Rorug03G0326200 Rorug05G0052400
rosa_samantha	Rh4AG030400 Rh4BG023600 Rh4CG033000 Rh5AG143000 Rh5BG141600 Rh5CG153600 Rh6BG517200 Rh6DG508800
rosa_wichuraiana	Rw4G002290 Rw5G012670 Rw6G044060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	407, 587
AciI	CCGC	4 cut(s)	54, 399, 405, 411
AclWI	GGATC	1 cut(s)	687
AcoI	YGGCCR	1 cut(s)	292
AcsI	RAATTY	3 cut(s)	117, 325, 710
AcuI	CTGAAG	1 cut(s)	506
AcyI	GRCGYC	1 cut(s)	408
AfaI	GTAC	1 cut(s)	544
AfiI	CCNNNNNNNGG	1 cut(s)	336
AgsI	TTSAA	5 cut(s)	123, 175, 539, 599, 730
AjiI	CACGTC	1 cut(s)	660
AjnI	CCWGG	1 cut(s)	289
AloI	GAACNNNNNNTCC	2 cut(s)	374, 406
AluBI	AGCT	7 cut(s)	12, 229, 346, 480, 628, 632, 734
AluI	AGCT	7 cut(s)	12, 229, 346, 480, 628, 632, 734
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	2 cut(s)	154, 630
AlwI	GGATC	1 cut(s)	687
AlwNI	CAGNNNCTG	1 cut(s)	73
Ama87I	CYCGRG	1 cut(s)	57
AoxI	GGCC	3 cut(s)	133, 185, 292
ApeKI	GCWGC	1 cut(s)	402
ApoI	RAATTY	3 cut(s)	117, 325, 710
Asp700I	GAANNNNTTC	3 cut(s)	118, 519, 668
AspLEI	GCGC	1 cut(s)	410
AspS9I	GGNCC	1 cut(s)	51
AsuHPI	GGTGA	2 cut(s)	110, 484
AsuII	TTCGAA	1 cut(s)	21
AsuNHI	GCTAGC	1 cut(s)	628
AvaI	CYCGRG	1 cut(s)	57
AvaII	GGWCC	1 cut(s)	51
BanI	GGYRCC	2 cut(s)	407, 587
BanII	GRGCYC	1 cut(s)	231
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	414
BccI	CCATC	4 cut(s)	70, 162, 258, 457
BciT130I	CCWGG	1 cut(s)	291
BcoDI	GTCTC	2 cut(s)	154, 630
BfaI	CTAG	1 cut(s)	629
BfmI	CTRYAG	1 cut(s)	347
BfoI	RGCGCY	1 cut(s)	411
BglII	AGATCT	1 cut(s)	517
BisI	GCNGC	4 cut(s)	400, 403, 406, 411
BlsI	GCNGC	4 cut(s)	401, 404, 407, 412
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	1 cut(s)	51
BmeT110I	CYCGRG	1 cut(s)	57
BmgBI	CACGTC	1 cut(s)	660
BmgT120I	GGNCC	1 cut(s)	51
BmiI	GGNNCC	3 cut(s)	242, 409, 589
BmrFI	CCNGG	1 cut(s)	291
BmtI	GCTAGC	1 cut(s)	632
BpiI	GAAGAC	1 cut(s)	69
BplI	GAGNNNNNCTC	2 cut(s)	371, 403
BpmI	CTGGAG	1 cut(s)	654
Bpu14I	TTCGAA	1 cut(s)	21
BsaHI	GRCGYC	1 cut(s)	408
BsaJI	CCNNGG	1 cut(s)	414
BsaWI	WCCGGW	1 cut(s)	584
BsaXI	ACNNNNNCTCC	2 cut(s)	450, 480
Bsc4I	CCNNNNNNNGG	1 cut(s)	336
Bse1I	ACTGG	1 cut(s)	326
Bse3DI	GCAATG	2 cut(s)	207, 655
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	414
BseGI	GGATG	2 cut(s)	389, 468
BseLI	CCNNNNNNNGG	1 cut(s)	336
BseMI	GCAATG	2 cut(s)	207, 655
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	3 cut(s)	239, 376, 471
BseXI	GCAGC	1 cut(s)	414
BseYI	CCCAGC	1 cut(s)	395
BshFI	GGCC	3 cut(s)	135, 187, 294
BshNI	GGYRCC	2 cut(s)	407, 587
BsiHKAI	GWGCWC	1 cut(s)	231
BsiHKCI	CYCGRG	1 cut(s)	57
BsiSI	CCGG	2 cut(s)	279, 585
BslI	CCNNNNNNNGG	1 cut(s)	336
BsmAI	GTCTC	2 cut(s)	154, 630
BsmBI	CGTCTC	1 cut(s)	630
BsnI	GGCC	3 cut(s)	135, 187, 294
BsoBI	CYCGRG	1 cut(s)	57
Bsp119I	TTCGAA	1 cut(s)	21
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	3 cut(s)	372, 517, 679
BspACI	CCGC	4 cut(s)	54, 399, 405, 411
BspANI	GGCC	3 cut(s)	135, 187, 294
BspLI	GGNNCC	3 cut(s)	242, 409, 589
BspOI	GCTAGC	1 cut(s)	632
BspPI	GGATC	1 cut(s)	687
BspT104I	TTCGAA	1 cut(s)	21
BspT107I	GGYRCC	2 cut(s)	407, 587
BsrDI	GCAATG	2 cut(s)	207, 655
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	414
BssMI	GATC	3 cut(s)	372, 517, 679
BssNI	GRCGYC	1 cut(s)	408
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	2 cut(s)	98, 595
Bst6I	CTCTTC	2 cut(s)	146, 216
BstACI	GRCGYC	1 cut(s)	408
BstBI	TTCGAA	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	630
BstDEI	CTNAG	2 cut(s)	164, 335
BstF5I	GGATG	2 cut(s)	389, 468
BstH2I	RGCGCY	1 cut(s)	411
BstHHI	GCGC	1 cut(s)	410
BstKTI	GATC	3 cut(s)	375, 520, 682
BstMAI	GTCTC	2 cut(s)	154, 630
BstMBI	GATC	3 cut(s)	372, 517, 679
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 405, 486
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	1 cut(s)	347
BstV1I	GCAGC	1 cut(s)	414
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	2 cut(s)	517, 679
BstYI	RGATCY	2 cut(s)	517, 679
BsuRI	GGCC	3 cut(s)	135, 187, 294
BtrI	CACGTC	1 cut(s)	660
BtsCI	GGATG	2 cut(s)	389, 468
Cac8I	GCNNGC	1 cut(s)	630
CaiI	CAGNNNCTG	1 cut(s)	73
CfoI	GCGC	1 cut(s)	410
Cfr13I	GGNCC	1 cut(s)	51
Csp6I	GTAC	1 cut(s)	543
CviQI	GTAC	1 cut(s)	543
DdeI	CTNAG	2 cut(s)	164, 335
DinI	GGCGCC	1 cut(s)	409
DpnI	GATC	3 cut(s)	374, 519, 681
DpnII	GATC	3 cut(s)	372, 517, 679
EaeI	YGGCCR	1 cut(s)	292
Eam1104I	CTCTTC	2 cut(s)	146, 216
EarI	CTCTTC	2 cut(s)	146, 216
Ecl136II	GAGCTC	1 cut(s)	229
Eco147I	AGGCCT	2 cut(s)	135, 187
Eco24I	GRGCYC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	51
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	506
Eco88I	CYCGRG	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	229
EcoRI	GAATTC	1 cut(s)	325
EcoRII	CCWGG	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	231
EgeI	GGCGCC	1 cut(s)	409
EheI	GGCGCC	1 cut(s)	409
Esp3I	CGTCTC	1 cut(s)	630
FaiI	YATR	3 cut(s)	623, 674, 704
FalI	AAGNNNNNCTT	2 cut(s)	504, 536
Fnu4HI	GCNGC	4 cut(s)	400, 403, 406, 411
FokI	GGATG	2 cut(s)	376, 475
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	4 cut(s)	400, 403, 406, 411
FspBI	CTAG	1 cut(s)	629
GlaI	GCGC	1 cut(s)	409
GluI	GCNGC	4 cut(s)	400, 403, 406, 411
GsaI	CCCAGC	1 cut(s)	399
GsuI	CTGGAG	1 cut(s)	654
HaeII	RGCGCY	1 cut(s)	411
HaeIII	GGCC	3 cut(s)	135, 187, 294
HapII	CCGG	2 cut(s)	279, 585
HhaI	GCGC	1 cut(s)	410
Hin1I	GRCGYC	1 cut(s)	408
Hin6I	GCGC	1 cut(s)	408
HinP1I	GCGC	1 cut(s)	408
HindIII	AAGCTT	1 cut(s)	732
HinfI	GANTC	1 cut(s)	70
HpaII	CCGG	2 cut(s)	279, 585
HphI	GGTGA	2 cut(s)	110, 484
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	2 cut(s)	75, 709
Hpy188III	TCNNGA	1 cut(s)	536
Hpy8I	GTNNAC	1 cut(s)	51
HpyAV	CCTTC	2 cut(s)	95, 683
HpyCH4III	ACNGT	2 cut(s)	98, 595
HpyCH4IV	ACGT	2 cut(s)	84, 659
HpyCH4V	TGCA	2 cut(s)	212, 648
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 405, 486
HpyF3I	CTNAG	2 cut(s)	164, 335
HpySE526I	ACGT	2 cut(s)	84, 659
Hsp92I	GRCGYC	1 cut(s)	408
HspAI	GCGC	1 cut(s)	408
KasI	GGCGCC	1 cut(s)	407
Kzo9I	GATC	3 cut(s)	372, 517, 679
LmnI	GCTCC	3 cut(s)	44, 226, 246
Lsp1109I	GCAGC	1 cut(s)	414
MaeI	CTAG	1 cut(s)	629
MaeII	ACGT	2 cut(s)	84, 659
MaeIII	GTNAC	1 cut(s)	655
MalI	GATC	3 cut(s)	374, 519, 681
MboI	GATC	3 cut(s)	372, 517, 679
MboII	GAAGA	8 cut(s)	18, 49, 74, 163, 233, 294, 512, 527
MflI	RGATCY	2 cut(s)	517, 679
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	4 cut(s)	117, 175, 325, 710
Mly113I	GGCGCC	1 cut(s)	408
MmeI	TCCRAC	1 cut(s)	433
MroXI	GAANNNNTTC	3 cut(s)	118, 519, 668
MseI	TTAA	4 cut(s)	195, 312, 365, 507
MslI	CAYNNNNRTG	1 cut(s)	366
MspA1I	CMGCKG	2 cut(s)	399, 405
MspI	CCGG	2 cut(s)	279, 585
MspR9I	CCNGG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	3 cut(s)	53, 405, 486
NarI	GGCGCC	1 cut(s)	408
NdeII	GATC	3 cut(s)	372, 517, 679
NheI	GCTAGC	1 cut(s)	628
NlaIV	GGNNCC	3 cut(s)	242, 409, 589
NmeAIII	GCCGAG	1 cut(s)	439
NmuCI	GTSAC	1 cut(s)	655
NspV	TTCGAA	1 cut(s)	21
PceI	AGGCCT	2 cut(s)	135, 187
PdmI	GAANNNNTTC	3 cut(s)	118, 519, 668
PfeI	GAWTC	1 cut(s)	70
PflFI	GACNNNGTC	1 cut(s)	83
PkrI	GCNGC	4 cut(s)	401, 404, 407, 412
PluTI	GGCGCC	1 cut(s)	411
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	289
PspFI	CCCAGC	1 cut(s)	395
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	3 cut(s)	242, 409, 589
PspPI	GGNCC	1 cut(s)	51
PstNI	CAGNNNCTG	1 cut(s)	73
PsuI	RGATCY	2 cut(s)	517, 679
PsyI	GACNNNGTC	1 cut(s)	83
RsaI	GTAC	1 cut(s)	544
RsaNI	GTAC	1 cut(s)	543
RseI	CAYNNNNRTG	1 cut(s)	366
SacI	GAGCTC	1 cut(s)	231
SaqAI	TTAA	4 cut(s)	195, 312, 365, 507
SatI	GCNGC	4 cut(s)	400, 403, 406, 411
Sau3AI	GATC	3 cut(s)	372, 517, 679
Sau96I	GGNCC	1 cut(s)	51
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	1 cut(s)	231
SfcI	CTRYAG	1 cut(s)	347
SfoI	GGCGCC	1 cut(s)	409
SfuI	TTCGAA	1 cut(s)	21
SinI	GGWCC	1 cut(s)	51
SmiMI	CAYNNNNRTG	1 cut(s)	366
Sse9I	AATT	4 cut(s)	117, 175, 325, 710
SseBI	AGGCCT	2 cut(s)	135, 187
SsiI	CCGC	4 cut(s)	54, 399, 405, 411
SspDI	GGCGCC	1 cut(s)	407
SspMI	CTAG	1 cut(s)	629
SstI	GAGCTC	1 cut(s)	231
StuI	AGGCCT	2 cut(s)	135, 187
StyD4I	CCNGG	1 cut(s)	289
TaaI	ACNGT	2 cut(s)	98, 595
TaiI	ACGT	2 cut(s)	87, 662
TaqI	TCGA	2 cut(s)	21, 431
TasI	AATT	4 cut(s)	117, 175, 325, 710
TauI	GCSGC	3 cut(s)	402, 408, 413
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	4 cut(s)	195, 312, 365, 507
Tru9I	TTAA	4 cut(s)	195, 312, 365, 507
TseFI	GTSAC	1 cut(s)	655
TseI	GCWGC	1 cut(s)	402
Tsp45I	GTSAC	1 cut(s)	655
TspDTI	ATGAA	4 cut(s)	50, 234, 661, 702
Tth111I	GACNNNGTC	1 cut(s)	83
VpaK11BI	GGWCC	1 cut(s)	51
XapI	RAATTY	3 cut(s)	117, 325, 710
XmnI	GAANNNNTTC	3 cut(s)	118, 519, 668
XspI	CTAG	1 cut(s)	629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.