RLG00000009947
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0004526
Physical Location & Seq
Reverse (-)
60862571 .. 60863849
1279 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009947

Sequence Viewer

Length: 837 bp
ATGGGAAGAAACTCAGGTTTCGAAAAGGAGGGATTGAAGAAAGGTATGTGGTCTGCTCGCGAAGACCAGGTTCTCAAGAACTACGTCAAAAAGCACGGTCCAGGCAAATGGGGAAAAACAGCAAGGGAGACGGGTCTGAAGAGATGTGGGAAGAGTGTGAGACTGAGATGGTTGAATTATCTGAGGCCCGGTATCAAGAAAGGCAACATTACAGAAGATGAAGAAGACCTTATTATCAGGATGCACAAACTCGTAGGCAACAGGTGGTCATTGATAGCAGGAAGGATTCCGGGCCGAACAGACAATGAAATAAAAAACTACTGGAACTCCACTCTAAGGAAGAAGCTGGCAGAACAGAAAGAAAAGGAATCAGAAGTGTCGAGAAACGAGATGATCAAGGAGAACTTGCCATCCCCCGTTGAGGACGATGGTCATCAACATTTGACCAAATGCGATGTAGTTGTTGGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGAATTGATGTGTGTTGCCAGTAATGTTAATGTAGAAGAAGATCATCAGCGTCGTTGTCTTGGCGGTACTAGTACTGATACTACTATACTGAGTCCCAAAGTGGGAGTCGGAACCGGAGGCGGGGCAAACAATAATATCGAACCAGCTGGGGATGATCTCAATTATAAAGCTATGACCTGGAACGATTCGATAATGGATTTGAATGGAGGCCAACTCTACATGTCGGAATTCCTCCAAACTGAATTTTCGAAGTTTTGGGAAGAAACAGATAGGTTCATGAATTTTGAAGTCGGAGGTTGCAGCACCATTAATCATGAGTTGCCAAATCATTGGGATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

279

Amino Acids

30.99

Weight (kDa)

6.68

Isoelectric Point (pI)

50.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 4.9e-13 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 74 4.3e-09 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 111 2.6e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 120 1.7e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 660
AccII CGCG 1 cut(s) 60
AciI CCGC 3 cut(s) 468, 558, 615
AcsI RAATTY 3 cut(s) 722, 737, 775
AcuI CTGAAG 1 cut(s) 158
AfaI GTAC 2 cut(s) 562, 568
AfiI CCNNNNNNNGG 4 cut(s) 336, 421, 596, 615
AflIII ACRYGT 1 cut(s) 714
AgsI TTSAA 4 cut(s) 37, 175, 697, 782
AhlI ACTAGT 1 cut(s) 563
AjnI CCWGG 3 cut(s) 66, 100, 671
AloI GAACNNNNNNTCC 2 cut(s) 395, 427
AluBI AGCT 3 cut(s) 346, 641, 665
AluI AGCT 3 cut(s) 346, 641, 665
Alw26I GTCTC 2 cut(s) 122, 154
AoxI GGCC 3 cut(s) 185, 292, 703
ApeKI GCWGC 1 cut(s) 795
ApoI RAATTY 3 cut(s) 722, 737, 775
ArsI GACNNNNNNTTYG 2 cut(s) 585, 617
AseI ATTAAT 1 cut(s) 804
AspS9I GGNCC 3 cut(s) 98, 186, 292
AsuC2I CCSGG 2 cut(s) 189, 291
AsuII TTCGAA 2 cut(s) 21, 743
AvaII GGWCC 1 cut(s) 98
BbsI GAAGAC 2 cut(s) 69, 231
BbvI GCAGC 1 cut(s) 807
BccI CCATC 4 cut(s) 162, 418, 422, 824
BciT130I CCWGG 3 cut(s) 68, 102, 673
BclI TGATCA 1 cut(s) 393
BcnI CCSGG 2 cut(s) 189, 291
BcoDI GTCTC 2 cut(s) 122, 154
BcuI ACTAGT 1 cut(s) 563
BfaI CTAG 1 cut(s) 564
BisI GCNGC 1 cut(s) 796
BlsI GCNGC 1 cut(s) 797
BmcAI AGTACT 1 cut(s) 568
Bme1390I CCNGG 5 cut(s) 68, 102, 189, 291, 673
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 3 cut(s) 98, 186, 292
BmiI GGNNCC 1 cut(s) 607
BmrFI CCNGG 5 cut(s) 68, 102, 189, 291, 673
BmsI GCATC 1 cut(s) 231
BoxI GACNNNNGTC 1 cut(s) 429
BpiI GAAGAC 2 cut(s) 69, 231
BplI GAGNNNNNCTC 2 cut(s) 693, 725
Bpu14I TTCGAA 2 cut(s) 21, 743
BpuEI CTTGAG 1 cut(s) 59
BpuMI CCSGG 2 cut(s) 189, 291
BsaBI GATNNNNATC 1 cut(s) 432
BsaWI WCCGGW 1 cut(s) 608
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bsc4I CCNNNNNNNGG 4 cut(s) 336, 421, 596, 615
Bse1I ACTGG 2 cut(s) 326, 513
Bse8I GATNNNNATC 1 cut(s) 432
BseBI CCWGG 3 cut(s) 68, 102, 673
BseGI GGATG 4 cut(s) 246, 410, 652, 835
BseJI GATNNNNATC 1 cut(s) 432
BseLI CCNNNNNNNGG 4 cut(s) 336, 421, 596, 615
BseMII CTCAG 4 cut(s) 27, 155, 173, 575
BseNI ACTGG 2 cut(s) 326, 513
BseRI GAGGAG 8 cut(s) 486, 489, 492, 495, 498, 501, 504, 507
BseXI GCAGC 1 cut(s) 807
BseYI CCCAGC 1 cut(s) 641
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 3 cut(s) 187, 294, 705
BsiSI CCGG 3 cut(s) 189, 290, 609
BslFI GGGAC 1 cut(s) 573
BslI CCNNNNNNNGG 4 cut(s) 336, 421, 596, 615
BsmAI GTCTC 2 cut(s) 122, 154
BsmBI CGTCTC 1 cut(s) 122
BsmFI GGGAC 1 cut(s) 573
BsnI GGCC 3 cut(s) 187, 294, 705
Bsp119I TTCGAA 2 cut(s) 21, 743
Bsp143I GATC 3 cut(s) 393, 535, 649
Bsp68I TCGCGA 1 cut(s) 60
BspACI CCGC 3 cut(s) 468, 558, 615
BspANI GGCC 3 cut(s) 187, 294, 705
BspCNI CTCAG 4 cut(s) 26, 156, 174, 576
BspFNI CGCG 1 cut(s) 60
BspHI TCATGA 2 cut(s) 771, 808
BspLI GGNNCC 1 cut(s) 607
BspT104I TTCGAA 2 cut(s) 21, 743
BsrI ACTGG 2 cut(s) 326, 513
BssMI GATC 3 cut(s) 393, 535, 649
Bst2UI CCWGG 3 cut(s) 68, 102, 673
Bst4CI ACNGT 1 cut(s) 98
Bst6I CTCTTC 2 cut(s) 134, 146
BstBI TTCGAA 2 cut(s) 21, 743
BstC8I GCNNGC 2 cut(s) 58, 348
BstDEI CTNAG 5 cut(s) 13, 164, 182, 335, 584
BstF5I GGATG 4 cut(s) 246, 410, 652, 835
BstFNI CGCG 1 cut(s) 60
BstKTI GATC 3 cut(s) 396, 538, 652
BstMAI GTCTC 2 cut(s) 122, 154
BstMBI GATC 3 cut(s) 393, 535, 649
BstNI CCWGG 3 cut(s) 68, 102, 673
BstNSI RCATGY 1 cut(s) 718
BstPAI GACNNNNGTC 1 cut(s) 429
BstSCI CCNGG 5 cut(s) 66, 100, 187, 289, 671
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 807
BstV2I GAAGAC 2 cut(s) 69, 231
BstXI CCANNNNNNTGG 2 cut(s) 108, 825
BsuRI GGCC 3 cut(s) 187, 294, 705
BtgZI GCGATG 1 cut(s) 468
BtsCI GGATG 4 cut(s) 246, 410, 652, 835
BtuMI TCGCGA 1 cut(s) 60
Cac8I GCNNGC 2 cut(s) 58, 348
CciI TCATGA 2 cut(s) 771, 808
Cfr13I GGNCC 3 cut(s) 98, 186, 292
CseI GACGC 1 cut(s) 533
CsiI ACCWGGT 1 cut(s) 66
Csp6I GTAC 2 cut(s) 561, 567
CviAII CATG 3 cut(s) 715, 772, 809
CviJI RGCY 6 cut(s) 187, 294, 346, 641, 665, 705
CviKI_1 RGCY 6 cut(s) 187, 294, 346, 641, 665, 705
CviQI GTAC 2 cut(s) 561, 567
DdeI CTNAG 5 cut(s) 13, 164, 182, 335, 584
DpnI GATC 3 cut(s) 395, 537, 651
DpnII GATC 3 cut(s) 393, 535, 649
Eam1104I CTCTTC 2 cut(s) 134, 146
EarI CTCTTC 2 cut(s) 134, 146
EciI GGCGGA 1 cut(s) 483
Eco47I GGWCC 1 cut(s) 98
Eco57I CTGAAG 1 cut(s) 158
EcoRI GAATTC 1 cut(s) 722
EcoRII CCWGG 3 cut(s) 66, 100, 671
Esp3I CGTCTC 1 cut(s) 122
FaeI CATG 3 cut(s) 718, 775, 812
FaiI YATR 7 cut(s) 47, 581, 660, 668, 716, 773, 810
FalI AAGNNNNNCTT 4 cut(s) 213, 245, 389, 421
FaqI GGGAC 1 cut(s) 573
FatI CATG 3 cut(s) 714, 771, 808
FauI CCCGC 1 cut(s) 608
FbaI TGATCA 1 cut(s) 393
Fnu4HI GCNGC 1 cut(s) 796
FokI GGATG 3 cut(s) 253, 397, 659
Fsp4HI GCNGC 1 cut(s) 796
FspBI CTAG 1 cut(s) 564
GluI GCNGC 1 cut(s) 796
GsaI CCCAGC 1 cut(s) 645
HaeIII GGCC 3 cut(s) 187, 294, 705
HapII CCGG 3 cut(s) 189, 290, 609
HgaI GACGC 1 cut(s) 533
Hin1II CATG 3 cut(s) 718, 775, 812
HinfI GANTC 5 cut(s) 286, 368, 586, 600, 680
HpaII CCGG 3 cut(s) 189, 290, 609
Hpy188I TCNGA 6 cut(s) 138, 183, 373, 605, 721, 788
Hpy188III TCNNGA 7 cut(s) 59, 76, 196, 238, 381, 772, 809
Hpy99I CGWCG 1 cut(s) 549
HpyAV CCTTC 1 cut(s) 276
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 2 cut(s) 244, 795
HpyF3I CTNAG 5 cut(s) 13, 164, 182, 335, 584
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 3 cut(s) 718, 775, 812
Ksp22I TGATCA 1 cut(s) 393
Kzo9I GATC 3 cut(s) 393, 535, 649
Lsp1109I GCAGC 1 cut(s) 807
LweI GCATC 1 cut(s) 231
MabI ACCWGGT 1 cut(s) 66
MaeI CTAG 1 cut(s) 564
MaeII ACGT 1 cut(s) 84
MalI GATC 3 cut(s) 395, 537, 651
MboI GATC 3 cut(s) 393, 535, 649
MluCI AATT 6 cut(s) 175, 497, 655, 722, 737, 775
MlyI GAGTC 2 cut(s) 595, 609
MmeI TCCRAC 3 cut(s) 583, 699, 766
MseI TTAA 3 cut(s) 522, 804, 835
MslI CAYNNNNRTG 1 cut(s) 828
MspA1I CMGCKG 1 cut(s) 641
MspI CCGG 3 cut(s) 189, 290, 609
MspR9I CCNGG 5 cut(s) 68, 102, 189, 291, 673
MvaI CCWGG 3 cut(s) 68, 102, 673
MvnI CGCG 1 cut(s) 60
NciI CCSGG 2 cut(s) 189, 291
NdeII GATC 3 cut(s) 393, 535, 649
NlaIII CATG 3 cut(s) 718, 775, 812
NlaIV GGNNCC 1 cut(s) 607
NruI TCGCGA 1 cut(s) 60
NspI RCATGY 1 cut(s) 718
NspV TTCGAA 2 cut(s) 21, 743
PagI TCATGA 2 cut(s) 771, 808
PciI ACATGT 1 cut(s) 714
PfeI GAWTC 3 cut(s) 286, 368, 680
PkrI GCNGC 1 cut(s) 797
PleI GAGTC 2 cut(s) 594, 608
PpsI GAGTC 2 cut(s) 594, 608
PscI ACATGT 1 cut(s) 714
PshAI GACNNNNGTC 1 cut(s) 429
PshBI ATTAAT 1 cut(s) 804
PsiI TTATAA 1 cut(s) 660
Psp6I CCWGG 3 cut(s) 66, 100, 671
PspFI CCCAGC 1 cut(s) 641
PspGI CCWGG 3 cut(s) 66, 100, 671
PspN4I GGNNCC 1 cut(s) 607
PspPI GGNCC 3 cut(s) 98, 186, 292
PvuII CAGCTG 1 cut(s) 641
RruI TCGCGA 1 cut(s) 60
RsaI GTAC 2 cut(s) 562, 568
RsaNI GTAC 2 cut(s) 561, 567
RseI CAYNNNNRTG 1 cut(s) 828
SaqAI TTAA 3 cut(s) 522, 804, 835
SatI GCNGC 1 cut(s) 796
Sau3AI GATC 3 cut(s) 393, 535, 649
Sau96I GGNCC 3 cut(s) 98, 186, 292
ScaI AGTACT 1 cut(s) 568
SchI GAGTC 2 cut(s) 595, 609
ScrFI CCNGG 5 cut(s) 68, 102, 189, 291, 673
SexAI ACCWGGT 1 cut(s) 66
SfaNI GCATC 1 cut(s) 231
SfuI TTCGAA 2 cut(s) 21, 743
SinI GGWCC 1 cut(s) 98
SmiMI CAYNNNNRTG 1 cut(s) 828
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
SpeI ACTAGT 1 cut(s) 563
Sse9I AATT 6 cut(s) 175, 497, 655, 722, 737, 775
SsiI CCGC 3 cut(s) 468, 558, 615
SspMI CTAG 1 cut(s) 564
StyD4I CCNGG 5 cut(s) 66, 100, 187, 289, 671
TaaI ACNGT 1 cut(s) 98
TaiI ACGT 1 cut(s) 87
TaqI TCGA 5 cut(s) 21, 380, 633, 683, 743
TasI AATT 6 cut(s) 175, 497, 655, 722, 737, 775
TatI WGTACW 1 cut(s) 566
TfiI GAWTC 3 cut(s) 286, 368, 680
Tru1I TTAA 3 cut(s) 522, 804, 835
Tru9I TTAA 3 cut(s) 522, 804, 835
TseI GCWGC 1 cut(s) 795
TspDTI ATGAA 4 cut(s) 234, 321, 760, 788
VpaK11BI GGWCC 1 cut(s) 98
VspI ATTAAT 1 cut(s) 804
XapI RAATTY 3 cut(s) 722, 737, 775
XceI RCATGY 1 cut(s) 718
XspI CTAG 1 cut(s) 564
ZrmI AGTACT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.