Rh4BG023600
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0004526
Physical Location & Seq
Forward (+)
3717642 .. 3719272
1631 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG023600.1

Sequence Viewer

Length: 819 bp
ATGGGAAGAAACTCAGGTTTCGAAAAGGAGGGATTGAAGAAAGGTATGTGGTCTGCTCGCGAAGACCAGGTTCTCCAGAACTACGTCAAAAAACACGGTCCAGGCAAATGGGGAAAAACAGCAAGGGAGACTGGTCTGAAGAGATGTGGGAAGAGTGTGAGACTGAGATGGTTGAATTATCTGAGGCCCGGTATCAAGAAAGGCAACATTACAGAAGATGAAGAAGACCTTATTATCAGGATGCACAAACTCGTAGGCAACAGGTGGTCATTGATAGCAGGAAGGATTCCGGGCCGAACAGACAATGAAATAAAAAACTACTGGAACTCCACTCTAAGGAAGAAGCTGGCAGAACAGAAAGAAAAGGAATCAGAAATGTCGAGAAACGAGATGATCAAGGAGAACTTGCCATCCCCCGTTGGGGACGATGGTAATCAACATTTAACCAAATGCGATGTAGTTGTTGGCGGAGGAGGAGGATTGATGTGTTTTGCCAGTAATGTTAATGTAGAAGAAGATCATCAGCGTCGTTGTCTTGGCGGTACTAGTACTGATACTACTATACTGAGTCCCAGAGTGGGAGACGGAACCGGAGGCGGGGCAAACAATAATATCGAACCAGCTGGGGATGATCTCAATTATAACGCTATGACCTGGAACGATTCGATAATGGATTTGAATGGAGGCCAACTCTACATGTCGGAATTCCTCCAAACTGAATTTTCGAAGTTTTGGGAAGAAACAGATAGGTTCTTGAATTTTGAAGTCGGAGGTTGCAGCACCATTAATCATGAGTTGCCAAATAATTGGGATGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

272

Amino Acids

30.55

Weight (kDa)

6.26

Isoelectric Point (pI)

50.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 1.3e-12 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 1.1e-09 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 111 2.5e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 119 1.8e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 642
AccII CGCG 1 cut(s) 60
AciI CCGC 3 cut(s) 468, 540, 597
AcsI RAATTY 3 cut(s) 704, 719, 757
AcuI CTGAAG 1 cut(s) 158
AfaI GTAC 2 cut(s) 544, 550
AfiI CCNNNNNNNGG 5 cut(s) 336, 420, 421, 578, 597
AflIII ACRYGT 1 cut(s) 696
AgsI TTSAA 5 cut(s) 37, 175, 679, 757, 764
AhlI ACTAGT 1 cut(s) 545
AjnI CCWGG 3 cut(s) 66, 100, 653
AloI GAACNNNNNNTCC 2 cut(s) 395, 427
AluBI AGCT 2 cut(s) 346, 623
AluI AGCT 2 cut(s) 346, 623
Alw26I GTCTC 3 cut(s) 122, 154, 576
AoxI GGCC 3 cut(s) 185, 292, 685
ApeKI GCWGC 1 cut(s) 777
ApoI RAATTY 3 cut(s) 704, 719, 757
AseI ATTAAT 1 cut(s) 786
AspS9I GGNCC 3 cut(s) 98, 186, 292
AsuC2I CCSGG 2 cut(s) 189, 291
AsuII TTCGAA 2 cut(s) 21, 725
AvaII GGWCC 1 cut(s) 98
BbsI GAAGAC 2 cut(s) 69, 231
BbvI GCAGC 1 cut(s) 789
BccI CCATC 4 cut(s) 162, 418, 422, 806
BciT130I CCWGG 3 cut(s) 68, 102, 655
BclI TGATCA 1 cut(s) 393
BcnI CCSGG 2 cut(s) 189, 291
BcoDI GTCTC 3 cut(s) 122, 154, 576
BcuI ACTAGT 1 cut(s) 545
BfaI CTAG 1 cut(s) 546
BisI GCNGC 1 cut(s) 778
BlsI GCNGC 1 cut(s) 779
BmcAI AGTACT 1 cut(s) 550
Bme1390I CCNGG 5 cut(s) 68, 102, 189, 291, 655
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 3 cut(s) 98, 186, 292
BmiI GGNNCC 1 cut(s) 589
BmrFI CCNGG 5 cut(s) 68, 102, 189, 291, 655
BmsI GCATC 1 cut(s) 231
BpiI GAAGAC 2 cut(s) 69, 231
BplI GAGNNNNNCTC 2 cut(s) 675, 707
BpmI CTGGAG 1 cut(s) 59
Bpu14I TTCGAA 2 cut(s) 21, 725
BpuMI CCSGG 2 cut(s) 189, 291
BsaBI GATNNNNATC 1 cut(s) 432
BsaWI WCCGGW 1 cut(s) 590
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bsc4I CCNNNNNNNGG 5 cut(s) 336, 420, 421, 578, 597
Bse1I ACTGG 3 cut(s) 136, 326, 495
Bse8I GATNNNNATC 1 cut(s) 432
BseBI CCWGG 3 cut(s) 68, 102, 655
BseGI GGATG 4 cut(s) 246, 410, 634, 817
BseJI GATNNNNATC 1 cut(s) 432
BseLI CCNNNNNNNGG 5 cut(s) 336, 420, 421, 578, 597
BseMII CTCAG 4 cut(s) 27, 155, 173, 557
BseNI ACTGG 3 cut(s) 136, 326, 495
BseRI GAGGAG 2 cut(s) 486, 489
BseXI GCAGC 1 cut(s) 789
BseYI CCCAGC 1 cut(s) 623
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 3 cut(s) 187, 294, 687
BsiSI CCGG 3 cut(s) 189, 290, 591
BslFI GGGAC 2 cut(s) 437, 555
BslI CCNNNNNNNGG 5 cut(s) 336, 420, 421, 578, 597
BsmAI GTCTC 3 cut(s) 122, 154, 576
BsmBI CGTCTC 1 cut(s) 576
BsmFI GGGAC 2 cut(s) 437, 555
BsnI GGCC 3 cut(s) 187, 294, 687
Bsp119I TTCGAA 2 cut(s) 21, 725
Bsp143I GATC 3 cut(s) 393, 517, 631
Bsp68I TCGCGA 1 cut(s) 60
BspACI CCGC 3 cut(s) 468, 540, 597
BspANI GGCC 3 cut(s) 187, 294, 687
BspCNI CTCAG 4 cut(s) 26, 156, 174, 558
BspFNI CGCG 1 cut(s) 60
BspHI TCATGA 1 cut(s) 790
BspLI GGNNCC 1 cut(s) 589
BspT104I TTCGAA 2 cut(s) 21, 725
BsrI ACTGG 3 cut(s) 136, 326, 495
BssMI GATC 3 cut(s) 393, 517, 631
Bst2UI CCWGG 3 cut(s) 68, 102, 655
Bst4CI ACNGT 1 cut(s) 98
Bst6I CTCTTC 2 cut(s) 134, 146
BstBI TTCGAA 2 cut(s) 21, 725
BstC8I GCNNGC 2 cut(s) 58, 348
BstDEI CTNAG 5 cut(s) 13, 164, 182, 335, 566
BstF5I GGATG 4 cut(s) 246, 410, 634, 817
BstFNI CGCG 1 cut(s) 60
BstKTI GATC 3 cut(s) 396, 520, 634
BstMAI GTCTC 3 cut(s) 122, 154, 576
BstMBI GATC 3 cut(s) 393, 517, 631
BstNI CCWGG 3 cut(s) 68, 102, 655
BstNSI RCATGY 1 cut(s) 700
BstSCI CCNGG 5 cut(s) 66, 100, 187, 289, 653
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 789
BstV2I GAAGAC 2 cut(s) 69, 231
BstXI CCANNNNNNTGG 2 cut(s) 108, 807
BsuRI GGCC 3 cut(s) 187, 294, 687
BtgZI GCGATG 1 cut(s) 468
BtsCI GGATG 4 cut(s) 246, 410, 634, 817
BtuMI TCGCGA 1 cut(s) 60
Cac8I GCNNGC 2 cut(s) 58, 348
CciI TCATGA 1 cut(s) 790
Cfr13I GGNCC 3 cut(s) 98, 186, 292
CseI GACGC 1 cut(s) 515
CsiI ACCWGGT 1 cut(s) 66
Csp6I GTAC 2 cut(s) 543, 549
CviAII CATG 2 cut(s) 697, 791
CviJI RGCY 6 cut(s) 187, 294, 346, 623, 687, 816
CviKI_1 RGCY 6 cut(s) 187, 294, 346, 623, 687, 816
CviQI GTAC 2 cut(s) 543, 549
DdeI CTNAG 5 cut(s) 13, 164, 182, 335, 566
DpnI GATC 3 cut(s) 395, 519, 633
DpnII GATC 3 cut(s) 393, 517, 631
Eam1104I CTCTTC 2 cut(s) 134, 146
EarI CTCTTC 2 cut(s) 134, 146
EciI GGCGGA 1 cut(s) 483
Eco47I GGWCC 1 cut(s) 98
Eco57I CTGAAG 1 cut(s) 158
EcoRI GAATTC 1 cut(s) 704
EcoRII CCWGG 3 cut(s) 66, 100, 653
Esp3I CGTCTC 1 cut(s) 576
FaeI CATG 2 cut(s) 700, 794
FaiI YATR 6 cut(s) 47, 563, 642, 650, 698, 792
FalI AAGNNNNNCTT 4 cut(s) 213, 245, 389, 421
FaqI GGGAC 2 cut(s) 437, 555
FatI CATG 2 cut(s) 696, 790
FauI CCCGC 1 cut(s) 590
FbaI TGATCA 1 cut(s) 393
Fnu4HI GCNGC 1 cut(s) 778
FokI GGATG 3 cut(s) 253, 397, 641
Fsp4HI GCNGC 1 cut(s) 778
FspBI CTAG 1 cut(s) 546
GluI GCNGC 1 cut(s) 778
GsaI CCCAGC 1 cut(s) 627
GsuI CTGGAG 1 cut(s) 59
HaeIII GGCC 3 cut(s) 187, 294, 687
HapII CCGG 3 cut(s) 189, 290, 591
HgaI GACGC 1 cut(s) 515
Hin1II CATG 2 cut(s) 700, 794
HinfI GANTC 4 cut(s) 286, 368, 568, 662
HpaII CCGG 3 cut(s) 189, 290, 591
Hpy188I TCNGA 5 cut(s) 138, 183, 373, 703, 770
Hpy188III TCNNGA 7 cut(s) 59, 76, 196, 238, 381, 754, 791
Hpy99I CGWCG 1 cut(s) 531
HpyAV CCTTC 1 cut(s) 276
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 2 cut(s) 244, 777
HpyF3I CTNAG 5 cut(s) 13, 164, 182, 335, 566
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 2 cut(s) 700, 794
Ksp22I TGATCA 1 cut(s) 393
Kzo9I GATC 3 cut(s) 393, 517, 631
Lsp1109I GCAGC 1 cut(s) 789
LweI GCATC 1 cut(s) 231
MabI ACCWGGT 1 cut(s) 66
MaeI CTAG 1 cut(s) 546
MaeII ACGT 1 cut(s) 84
MalI GATC 3 cut(s) 395, 519, 633
MboI GATC 3 cut(s) 393, 517, 631
MluCI AATT 6 cut(s) 175, 637, 704, 719, 757, 805
MlyI GAGTC 1 cut(s) 577
MmeI TCCRAC 2 cut(s) 681, 748
MnlI CCTC 9 cut(s) 22, 177, 464, 467, 470, 587, 677, 719, 764
MseI TTAA 3 cut(s) 443, 504, 786
MspA1I CMGCKG 1 cut(s) 623
MspI CCGG 3 cut(s) 189, 290, 591
MspR9I CCNGG 5 cut(s) 68, 102, 189, 291, 655
MvaI CCWGG 3 cut(s) 68, 102, 655
MvnI CGCG 1 cut(s) 60
NciI CCSGG 2 cut(s) 189, 291
NdeII GATC 3 cut(s) 393, 517, 631
NlaIII CATG 2 cut(s) 700, 794
NlaIV GGNNCC 1 cut(s) 589
NruI TCGCGA 1 cut(s) 60
NspI RCATGY 1 cut(s) 700
NspV TTCGAA 2 cut(s) 21, 725
PagI TCATGA 1 cut(s) 790
PciI ACATGT 1 cut(s) 696
PfeI GAWTC 3 cut(s) 286, 368, 662
PkrI GCNGC 1 cut(s) 779
PleI GAGTC 1 cut(s) 576
PpsI GAGTC 1 cut(s) 576
PscI ACATGT 1 cut(s) 696
PshBI ATTAAT 1 cut(s) 786
PsiI TTATAA 1 cut(s) 642
Psp6I CCWGG 3 cut(s) 66, 100, 653
PspFI CCCAGC 1 cut(s) 623
PspGI CCWGG 3 cut(s) 66, 100, 653
PspN4I GGNNCC 1 cut(s) 589
PspPI GGNCC 3 cut(s) 98, 186, 292
PvuII CAGCTG 1 cut(s) 623
RruI TCGCGA 1 cut(s) 60
RsaI GTAC 2 cut(s) 544, 550
RsaNI GTAC 2 cut(s) 543, 549
SaqAI TTAA 3 cut(s) 443, 504, 786
SatI GCNGC 1 cut(s) 778
Sau3AI GATC 3 cut(s) 393, 517, 631
Sau96I GGNCC 3 cut(s) 98, 186, 292
ScaI AGTACT 1 cut(s) 550
SchI GAGTC 1 cut(s) 577
ScrFI CCNGG 5 cut(s) 68, 102, 189, 291, 655
SexAI ACCWGGT 1 cut(s) 66
SfaNI GCATC 1 cut(s) 231
SfuI TTCGAA 2 cut(s) 21, 725
SinI GGWCC 1 cut(s) 98
SpeI ACTAGT 1 cut(s) 545
Sse9I AATT 6 cut(s) 175, 637, 704, 719, 757, 805
SsiI CCGC 3 cut(s) 468, 540, 597
SspMI CTAG 1 cut(s) 546
StyD4I CCNGG 5 cut(s) 66, 100, 187, 289, 653
TaaI ACNGT 1 cut(s) 98
TaiI ACGT 1 cut(s) 87
TaqI TCGA 5 cut(s) 21, 380, 615, 665, 725
TasI AATT 6 cut(s) 175, 637, 704, 719, 757, 805
TatI WGTACW 1 cut(s) 548
TfiI GAWTC 3 cut(s) 286, 368, 662
Tru1I TTAA 3 cut(s) 443, 504, 786
Tru9I TTAA 3 cut(s) 443, 504, 786
TseI GCWGC 1 cut(s) 777
TspDTI ATGAA 2 cut(s) 234, 321
TspGWI ACGGA 1 cut(s) 600
VpaK11BI GGWCC 1 cut(s) 98
VspI ATTAAT 1 cut(s) 786
XapI RAATTY 3 cut(s) 704, 719, 757
XceI RCATGY 1 cut(s) 700
XspI CTAG 1 cut(s) 546
ZrmI AGTACT 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.