Rroxscaffold_1G00058440
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004526
Physical Location & Seq
Reverse (-)
80331392 .. 80335342
3951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00058440.1

Sequence Viewer

Length: 813 bp
ATGTGCAGGTCTGAAGAGATGTGGGAAGAGTGTGAGACTGAGGTGGTTGAATTACCTGAGGCCCGGTATCAAGAGAGGCAAGATCACAGAAGACGAAAAAGACCTTATCATCAGGATGCACAAACTCTTAGGCAACAGAGAGAGAGACTCCACTGGACTCCGGTCGCCGGAATCTGGTTACCGGCCTCTAGAATCCGATCACCGGCGGCCAAAATCCGGTGGTCATTGATAGCAGGAAGGATTCCGGGCCGAACTGATAATGAAATAAAGAACTACTGGAATTGCATTCTAAGGAAGAACGTGGGAGAAGAAAAAGAGAGAGAATCAGTAGTGTCGAGAAACGAGATGATCAAGGAGAATTTGCCATCCCTCGCTGAGGACGATGGTCATCCACATTTGACCAAATGCGATGAAGTTCTTGGAGGAGGAGGAGGAGGAGGAGGATTGGTGTGTTTTAACAGTGATGTTAATGTAGAAGGAGATCACCGGCGTCGTTGTCTTGGCGGTACTAGTACCGATACTACTACACTGAGTTCCGGAGTGGGAGTCGAAATCGGAGGCGGGGCAAACATTAATGATATTCAACCAACAGGGGATGATCTCAATTATAACGCTATGACCTGGAAAGATTCGATAATGGATCTGAATGGAGACCAACTCGACATATCTGAATTCCTCCAAAGTGACTTTTCGACGTTTTGGGATTCAGATAGGCTCATGAATTTTGAAATCGGAGAGACATTACGTGAAATTCTTGGCTTTCACTCAAGTGGGTGGTCAGCCAATGACATGTCAACAGATCTGAGTCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

270

Amino Acids

30.57

Weight (kDa)

5.0

Isoelectric Point (pI)

65.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 73 - 94 3.2e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 609
AccIII TCCGGA 1 cut(s) 536
AciI CCGC 3 cut(s) 206, 504, 561
AclWI GGATC 1 cut(s) 648
AcoI YGGCCR 1 cut(s) 207
AcsI RAATTY 4 cut(s) 358, 671, 721, 750
AcuI CTGAAG 1 cut(s) 33
AcyI GRCGYC 1 cut(s) 490
AfaI GTAC 2 cut(s) 508, 514
AfiI CCNNNNNNNGG 5 cut(s) 167, 174, 202, 216, 376
AflIII ACRYGT 1 cut(s) 789
AgsI TTSAA 3 cut(s) 50, 584, 728
AhlI ACTAGT 1 cut(s) 509
AjnI CCWGG 1 cut(s) 620
AleI CACNNNNGTG 1 cut(s) 768
Alw26I GTCTC 4 cut(s) 29, 139, 645, 731
AlwI GGATC 1 cut(s) 648
Aor13HI TCCGGA 1 cut(s) 536
AoxI GGCC 4 cut(s) 60, 183, 207, 247
ApoI RAATTY 4 cut(s) 358, 671, 721, 750
AseI ATTAAT 1 cut(s) 573
AspS9I GGNCC 2 cut(s) 61, 247
AsuC2I CCSGG 2 cut(s) 64, 246
AsuHPI GGTGA 2 cut(s) 192, 476
AxyI CCTNAGG 1 cut(s) 57
BbsI GAAGAC 1 cut(s) 97
BbvCI CCTCAGC 1 cut(s) 375
BccI CCATC 2 cut(s) 373, 377
BciT130I CCWGG 1 cut(s) 622
BclI TGATCA 1 cut(s) 348
BcnI CCSGG 2 cut(s) 64, 246
BcoDI GTCTC 4 cut(s) 29, 139, 645, 731
BcuI ACTAGT 1 cut(s) 509
BfaI CTAG 2 cut(s) 189, 510
BglII AGATCT 1 cut(s) 799
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
Bme1390I CCNGG 3 cut(s) 64, 246, 622
BmgT120I GGNCC 2 cut(s) 61, 247
BmrFI CCNGG 3 cut(s) 64, 246, 622
BmsI GCATC 1 cut(s) 106
BoxI GACNNNNGTC 2 cut(s) 161, 384
BpiI GAAGAC 1 cut(s) 97
BplI GAGNNNNNCTC 4 cut(s) 132, 164, 642, 674
Bpu10I CCTNAGC 1 cut(s) 375
BpuEI CTTGAG 1 cut(s) 751
BpuMI CCSGG 2 cut(s) 64, 246
BsaAI YACGTR 1 cut(s) 746
BsaBI GATNNNNATC 1 cut(s) 387
BsaHI GRCGYC 1 cut(s) 490
BsaI GGTCTC 1 cut(s) 645
BsaWI WCCGGW 3 cut(s) 160, 216, 536
BsaXI ACNNNNNCTCC 4 cut(s) 432, 462, 531, 561
Bsc4I CCNNNNNNNGG 5 cut(s) 167, 174, 202, 216, 376
Bse118I RCCGGY 3 cut(s) 181, 202, 486
Bse1I ACTGG 2 cut(s) 158, 281
Bse21I CCTNAGG 1 cut(s) 57
Bse8I GATNNNNATC 1 cut(s) 387
BseAI TCCGGA 1 cut(s) 536
BseBI CCWGG 1 cut(s) 622
BseGI GGATG 4 cut(s) 121, 365, 388, 601
BseJI GATNNNNATC 1 cut(s) 387
BseLI CCNNNNNNNGG 5 cut(s) 167, 174, 202, 216, 376
BseMII CTCAG 5 cut(s) 30, 48, 366, 521, 794
BseNI ACTGG 2 cut(s) 158, 281
BseRI GAGGAG 6 cut(s) 438, 441, 444, 447, 450, 453
BsgI GTGCAG 1 cut(s) 25
Bsh1285I CGRYCG 1 cut(s) 165
BshFI GGCC 4 cut(s) 62, 185, 209, 249
BsiEI CGRYCG 1 cut(s) 165
BsiSI CCGG 9 cut(s) 64, 161, 168, 182, 203, 217, 245, 487, 537
BslI CCNNNNNNNGG 5 cut(s) 167, 174, 202, 216, 376
BsmAI GTCTC 4 cut(s) 29, 139, 645, 731
BsmI GAATGC 1 cut(s) 285
BsnI GGCC 4 cut(s) 62, 185, 209, 249
Bso31I GGTCTC 1 cut(s) 645
Bsp13I TCCGGA 1 cut(s) 536
Bsp143I GATC 7 cut(s) 82, 197, 348, 481, 598, 640, 799
BspACI CCGC 3 cut(s) 206, 504, 561
BspANI GGCC 4 cut(s) 62, 185, 209, 249
BspCNI CTCAG 5 cut(s) 31, 49, 367, 522, 795
BspEI TCCGGA 1 cut(s) 536
BspHI TCATGA 1 cut(s) 717
BspPI GGATC 1 cut(s) 648
BspTNI GGTCTC 1 cut(s) 645
BsrFI RCCGGY 3 cut(s) 181, 202, 486
BsrI ACTGG 2 cut(s) 158, 281
BssAI RCCGGY 3 cut(s) 181, 202, 486
BssMI GATC 7 cut(s) 82, 197, 348, 481, 598, 640, 799
BssNI GRCGYC 1 cut(s) 490
Bst2UI CCWGG 1 cut(s) 622
Bst4CI ACNGT 1 cut(s) 461
Bst6I CTCTTC 2 cut(s) 9, 21
BstACI GRCGYC 1 cut(s) 490
BstBAI YACGTR 1 cut(s) 746
BstDEI CTNAG 7 cut(s) 39, 57, 128, 290, 375, 530, 803
BstEII GGTNACC 1 cut(s) 177
BstENI CCTNNNNNAGG 1 cut(s) 374
BstF5I GGATG 4 cut(s) 121, 365, 388, 601
BstKTI GATC 7 cut(s) 85, 200, 351, 484, 601, 643, 802
BstMAI GTCTC 4 cut(s) 29, 139, 645, 731
BstMBI GATC 7 cut(s) 82, 197, 348, 481, 598, 640, 799
BstMCI CGRYCG 1 cut(s) 165
BstNI CCWGG 1 cut(s) 622
BstNSI RCATGY 1 cut(s) 793
BstPAI GACNNNNGTC 2 cut(s) 161, 384
BstPI GGTNACC 1 cut(s) 177
BstSCI CCNGG 3 cut(s) 62, 244, 620
BstV2I GAAGAC 1 cut(s) 97
BstX2I RGATCY 2 cut(s) 640, 799
BstYI RGATCY 2 cut(s) 640, 799
Bsu36I CCTNAGG 1 cut(s) 57
BsuRI GGCC 4 cut(s) 62, 185, 209, 249
BtgZI GCGATG 1 cut(s) 423
BtsCI GGATG 4 cut(s) 121, 365, 388, 601
BtsIMutI CAGTG 3 cut(s) 151, 466, 527
CciI TCATGA 1 cut(s) 717
Cfr10I RCCGGY 3 cut(s) 181, 202, 486
Cfr13I GGNCC 2 cut(s) 61, 247
CseI GACGC 1 cut(s) 479
Csp6I GTAC 2 cut(s) 507, 513
CviAII CATG 2 cut(s) 718, 790
CviJI RGCY 7 cut(s) 62, 185, 209, 249, 715, 759, 782
CviKI_1 RGCY 7 cut(s) 62, 185, 209, 249, 715, 759, 782
CviQI GTAC 2 cut(s) 507, 513
DdeI CTNAG 7 cut(s) 39, 57, 128, 290, 375, 530, 803
DpnI GATC 7 cut(s) 84, 199, 350, 483, 600, 642, 801
DpnII GATC 7 cut(s) 82, 197, 348, 481, 598, 640, 799
EaeI YGGCCR 1 cut(s) 207
Eam1104I CTCTTC 2 cut(s) 9, 21
EarI CTCTTC 2 cut(s) 9, 21
Eco31I GGTCTC 1 cut(s) 645
Eco57I CTGAAG 1 cut(s) 33
Eco81I CCTNAGG 1 cut(s) 57
Eco91I GGTNACC 1 cut(s) 177
EcoNI CCTNNNNNAGG 1 cut(s) 374
EcoO65I GGTNACC 1 cut(s) 177
EcoRI GAATTC 1 cut(s) 671
EcoRII CCWGG 1 cut(s) 620
FaeI CATG 2 cut(s) 721, 793
FaiI YATR 5 cut(s) 609, 617, 665, 719, 791
FatI CATG 2 cut(s) 717, 789
FauI CCCGC 1 cut(s) 554
FbaI TGATCA 1 cut(s) 348
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 4 cut(s) 128, 352, 375, 608
Fsp4HI GCNGC 1 cut(s) 207
FspBI CTAG 2 cut(s) 189, 510
GluI GCNGC 1 cut(s) 207
HaeIII GGCC 4 cut(s) 62, 185, 209, 249
HapII CCGG 9 cut(s) 64, 161, 168, 182, 203, 217, 245, 487, 537
HgaI GACGC 1 cut(s) 479
Hin1I GRCGYC 1 cut(s) 490
Hin1II CATG 2 cut(s) 721, 793
HincII GTYRAC 1 cut(s) 795
HindII GTYRAC 1 cut(s) 795
HpaII CCGG 9 cut(s) 64, 161, 168, 182, 203, 217, 245, 487, 537
HphI GGTGA 2 cut(s) 192, 476
Hpy166II GTNNAC 1 cut(s) 795
Hpy188I TCNGA 8 cut(s) 13, 197, 557, 645, 670, 709, 734, 804
Hpy188III TCNNGA 6 cut(s) 71, 113, 189, 336, 537, 718
Hpy8I GTNNAC 1 cut(s) 795
Hpy99I CGWCG 2 cut(s) 495, 697
HpyAV CCTTC 2 cut(s) 231, 470
HpyCH4III ACNGT 1 cut(s) 461
HpyCH4IV ACGT 3 cut(s) 300, 695, 745
HpyCH4V TGCA 3 cut(s) 6, 119, 285
HpyF3I CTNAG 7 cut(s) 39, 57, 128, 290, 375, 530, 803
HpySE526I ACGT 3 cut(s) 300, 695, 745
Hsp92I GRCGYC 1 cut(s) 490
Hsp92II CATG 2 cut(s) 721, 793
Kpn2I TCCGGA 1 cut(s) 536
Ksp22I TGATCA 1 cut(s) 348
Kzo9I GATC 7 cut(s) 82, 197, 348, 481, 598, 640, 799
LweI GCATC 1 cut(s) 106
MaeI CTAG 2 cut(s) 189, 510
MaeII ACGT 3 cut(s) 300, 695, 745
MaeIII GTNAC 2 cut(s) 177, 683
MalI GATC 7 cut(s) 84, 199, 350, 483, 600, 642, 801
MboI GATC 7 cut(s) 82, 197, 348, 481, 598, 640, 799
MboII GAAGA 5 cut(s) 26, 38, 102, 307, 320
MflI RGATCY 2 cut(s) 640, 799
MluCI AATT 7 cut(s) 50, 280, 358, 604, 671, 721, 750
MlyI GAGTC 3 cut(s) 141, 151, 555
MroI TCCGGA 1 cut(s) 536
MseI TTAA 3 cut(s) 456, 468, 573
MslI CAYNNNNRTG 2 cut(s) 114, 768
MspI CCGG 9 cut(s) 64, 161, 168, 182, 203, 217, 245, 487, 537
MspR9I CCNGG 3 cut(s) 64, 246, 622
Mva1269I GAATGC 1 cut(s) 285
MvaI CCWGG 1 cut(s) 622
NciI CCSGG 2 cut(s) 64, 246
NdeII GATC 7 cut(s) 82, 197, 348, 481, 598, 640, 799
NlaIII CATG 2 cut(s) 721, 793
NmuCI GTSAC 1 cut(s) 683
NspI RCATGY 1 cut(s) 793
OliI CACNNNNGTG 1 cut(s) 768
PagI TCATGA 1 cut(s) 717
PciI ACATGT 1 cut(s) 789
PcsI WCGNNNNNNNCGW 1 cut(s) 378
PctI GAATGC 1 cut(s) 285
PfeI GAWTC 6 cut(s) 171, 192, 241, 323, 629, 704
PkrI GCNGC 1 cut(s) 208
PleI GAGTC 3 cut(s) 141, 151, 554
PpsI GAGTC 3 cut(s) 141, 151, 554
Ppu21I YACGTR 1 cut(s) 746
PscI ACATGT 1 cut(s) 789
PshAI GACNNNNGTC 2 cut(s) 161, 384
PshBI ATTAAT 1 cut(s) 573
PsiI TTATAA 1 cut(s) 609
Psp6I CCWGG 1 cut(s) 620
PspEI GGTNACC 1 cut(s) 177
PspGI CCWGG 1 cut(s) 620
PspPI GGNCC 2 cut(s) 61, 247
PsuI RGATCY 2 cut(s) 640, 799
RsaI GTAC 2 cut(s) 508, 514
RsaNI GTAC 2 cut(s) 507, 513
RseI CAYNNNNRTG 2 cut(s) 114, 768
SaqAI TTAA 3 cut(s) 456, 468, 573
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 7 cut(s) 82, 197, 348, 481, 598, 640, 799
Sau96I GGNCC 2 cut(s) 61, 247
SchI GAGTC 3 cut(s) 141, 151, 555
ScrFI CCNGG 3 cut(s) 64, 246, 622
SetI ASST 8 cut(s) 11, 45, 58, 106, 303, 623, 698, 748
SfaNI GCATC 1 cut(s) 106
SgrAI CRCCGGYG 2 cut(s) 202, 486
SmiMI CAYNNNNRTG 2 cut(s) 114, 768
SmlI CTYRAG 1 cut(s) 766
SmoI CTYRAG 1 cut(s) 766
SpeI ACTAGT 1 cut(s) 509
Sse9I AATT 7 cut(s) 50, 280, 358, 604, 671, 721, 750
SsiI CCGC 3 cut(s) 206, 504, 561
SspMI CTAG 2 cut(s) 189, 510
StyD4I CCNGG 3 cut(s) 62, 244, 620
TaaI ACNGT 1 cut(s) 461
TaiI ACGT 3 cut(s) 303, 698, 748
TaqI TCGA 5 cut(s) 335, 549, 632, 660, 692
TasI AATT 7 cut(s) 50, 280, 358, 604, 671, 721, 750
TauI GCSGC 1 cut(s) 209
TfiI GAWTC 6 cut(s) 171, 192, 241, 323, 629, 704
Tru1I TTAA 3 cut(s) 456, 468, 573
Tru9I TTAA 3 cut(s) 456, 468, 573
TscAI CASTG 3 cut(s) 158, 466, 534
TseFI GTSAC 1 cut(s) 683
Tsp45I GTSAC 1 cut(s) 683
TspDTI ATGAA 3 cut(s) 276, 426, 734
TspRI CASTG 3 cut(s) 158, 466, 534
VspI ATTAAT 1 cut(s) 573
XagI CCTNNNNNAGG 1 cut(s) 374
XapI RAATTY 4 cut(s) 358, 671, 721, 750
XbaI TCTAGA 1 cut(s) 188
XceI RCATGY 1 cut(s) 793
XspI CTAG 2 cut(s) 189, 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.