Rw5G012670
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0004526
Physical Location & Seq
Forward (+)
14953623 .. 14954860
1238 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G012670.1

Sequence Viewer

Length: 762 bp
ATGGGAAGATACTCTGGTTTCGAAAAGGGGGGATTGAAGAAAGGTACGTGGTCTGCTTGCGAAGACCAGGTTCTCAAGGATTACGTCAAAAAGCACGGTCCAGGCAAATGGGGAAAACTATCAAGGGAGACCGGTTTGAAGAGATGTGGGAAGAGTGTGAGACTGAGGTGGTTGAATTACCTGAGGCCCGGTATCAAGAGAGGCAAGATTACAGAAGATGAAAAAGACCTTATCATCAGGATGCACAAACTCTTAGGCAACAGGTGGTCATTGATAGCCGGAAGGATTCCGGGCAGAACTGACAATGAAATAAAGAACTACTGGAATTCCATTCTAAGGAAGAACGTGGGAGAAGAAAAAGAGAGAGAATCAGAAGTGTCGAGAAACGAGATAATCAAGGAGAACTTGCCATCCCTCGCTGAGGACGATGGTCATCCACATTTGACCAAATGCGATGAAGTTCTTGGAGGAGGAGGAGGATTGGTGTGTTTTGCCAGTGATGTTAATGTAGAAGAAGATCACCGTACACTGAGTCCCGGAGTGGGAGTCGAAATCGGAGGCGGGGCAAACAATGATATTCAACCAACAGGGGATGATCTCAATTATAACGCTATAACCTGGAAAGATTCGATAATGGATCTGAATGGAGGCCAACTCGACATATCTGAATTCCTCCAAAGTGACTTTTCGACGTTTTGGGATTCAGATAGGCTCATGAATTTTGAAATCGGAGGTTGCAGCACCATGAATTATGATTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

253

Amino Acids

28.37

Weight (kDa)

5.83

Isoelectric Point (pI)

42.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 1.9e-13 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 74 4.7e-09 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 1e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 116 1e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 606
AciI CCGC 1 cut(s) 561
AclWI GGATC 1 cut(s) 645
AcsI RAATTY 3 cut(s) 325, 668, 718
AfaI GTAC 2 cut(s) 46, 526
AfiI CCNNNNNNNGG 3 cut(s) 336, 421, 542
AgeI ACCGGT 1 cut(s) 131
AgsI TTSAA 5 cut(s) 37, 139, 175, 581, 725
AjnI CCWGG 3 cut(s) 66, 100, 617
AloI GAACNNNNNNTCC 2 cut(s) 395, 427
Alw26I GTCTC 2 cut(s) 122, 154
AlwI GGATC 1 cut(s) 645
AoxI GGCC 2 cut(s) 185, 649
ApeKI GCWGC 1 cut(s) 738
ApoI RAATTY 3 cut(s) 325, 668, 718
AsiGI ACCGGT 1 cut(s) 131
AspS9I GGNCC 2 cut(s) 98, 186
AsuC2I CCSGG 3 cut(s) 189, 291, 537
AsuHPI GGTGA 1 cut(s) 512
AsuII TTCGAA 1 cut(s) 21
AvaII GGWCC 1 cut(s) 98
AxyI CCTNAGG 1 cut(s) 182
BaeI ACNNNNGTAYC 1 cut(s) 34
BbsI GAAGAC 1 cut(s) 69
BbvCI CCTCAGC 1 cut(s) 420
BbvI GCAGC 1 cut(s) 750
BccI CCATC 2 cut(s) 418, 422
BciT130I CCWGG 3 cut(s) 68, 102, 619
BcnI CCSGG 3 cut(s) 189, 291, 537
BcoDI GTCTC 2 cut(s) 122, 154
BisI GCNGC 1 cut(s) 739
BlsI GCNGC 1 cut(s) 740
Bme1390I CCNGG 6 cut(s) 68, 102, 189, 291, 537, 619
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 2 cut(s) 98, 186
BmrFI CCNGG 6 cut(s) 68, 102, 189, 291, 537, 619
BmsI GCATC 1 cut(s) 231
BoxI GACNNNNGTC 1 cut(s) 429
BpiI GAAGAC 1 cut(s) 69
BplI GAGNNNNNCTC 2 cut(s) 639, 671
Bpu10I CCTNAGC 1 cut(s) 420
Bpu14I TTCGAA 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 59
BpuMI CCSGG 3 cut(s) 189, 291, 537
BsaAI YACGTR 1 cut(s) 48
BsaBI GATNNNNATC 1 cut(s) 432
BsaI GGTCTC 1 cut(s) 122
BsaWI WCCGGW 1 cut(s) 131
BsaXI ACNNNNNCTCC 4 cut(s) 468, 498, 531, 561
Bsc4I CCNNNNNNNGG 3 cut(s) 336, 421, 542
Bse118I RCCGGY 1 cut(s) 131
Bse1I ACTGG 2 cut(s) 326, 495
Bse21I CCTNAGG 1 cut(s) 182
Bse8I GATNNNNATC 1 cut(s) 432
BseBI CCWGG 3 cut(s) 68, 102, 619
BseGI GGATG 4 cut(s) 246, 410, 433, 598
BseJI GATNNNNATC 1 cut(s) 432
BseLI CCNNNNNNNGG 3 cut(s) 336, 421, 542
BseMII CTCAG 4 cut(s) 155, 173, 411, 521
BseNI ACTGG 2 cut(s) 326, 495
BseRI GAGGAG 3 cut(s) 483, 486, 489
BseXI GCAGC 1 cut(s) 750
BshFI GGCC 2 cut(s) 187, 651
BshTI ACCGGT 1 cut(s) 131
BsiSI CCGG 5 cut(s) 132, 189, 279, 290, 537
BslFI GGGAC 1 cut(s) 519
BslI CCNNNNNNNGG 3 cut(s) 336, 421, 542
BsmAI GTCTC 2 cut(s) 122, 154
BsmFI GGGAC 1 cut(s) 519
BsnI GGCC 2 cut(s) 187, 651
Bso31I GGTCTC 1 cut(s) 122
Bsp119I TTCGAA 1 cut(s) 21
Bsp143I GATC 3 cut(s) 517, 595, 637
BspACI CCGC 1 cut(s) 561
BspANI GGCC 2 cut(s) 187, 651
BspCNI CTCAG 4 cut(s) 156, 174, 412, 522
BspHI TCATGA 1 cut(s) 714
BspPI GGATC 1 cut(s) 645
BspT104I TTCGAA 1 cut(s) 21
BspTNI GGTCTC 1 cut(s) 122
BsrFI RCCGGY 1 cut(s) 131
BsrI ACTGG 2 cut(s) 326, 495
BssAI RCCGGY 1 cut(s) 131
BssMI GATC 3 cut(s) 517, 595, 637
Bst2UI CCWGG 3 cut(s) 68, 102, 619
Bst4CI ACNGT 2 cut(s) 98, 524
Bst6I CTCTTC 2 cut(s) 134, 146
BstBAI YACGTR 1 cut(s) 48
BstBI TTCGAA 1 cut(s) 21
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 6 cut(s) 164, 182, 253, 335, 420, 530
BstENI CCTNNNNNAGG 1 cut(s) 419
BstF5I GGATG 4 cut(s) 246, 410, 433, 598
BstKTI GATC 3 cut(s) 520, 598, 640
BstMAI GTCTC 2 cut(s) 122, 154
BstMBI GATC 3 cut(s) 517, 595, 637
BstNI CCWGG 3 cut(s) 68, 102, 619
BstPAI GACNNNNGTC 1 cut(s) 429
BstSCI CCNGG 6 cut(s) 66, 100, 187, 289, 535, 617
BstV1I GCAGC 1 cut(s) 750
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 1 cut(s) 637
BstXI CCANNNNNNTGG 1 cut(s) 108
BstYI RGATCY 1 cut(s) 637
Bsu36I CCTNAGG 1 cut(s) 182
BsuRI GGCC 2 cut(s) 187, 651
BtgZI GCGATG 1 cut(s) 468
BtsCI GGATG 4 cut(s) 246, 410, 433, 598
BtsIMutI CAGTG 2 cut(s) 502, 527
Cac8I GCNNGC 1 cut(s) 58
CciI TCATGA 1 cut(s) 714
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 2 cut(s) 98, 186
CsiI ACCWGGT 1 cut(s) 66
Csp6I GTAC 2 cut(s) 45, 525
CspAI ACCGGT 1 cut(s) 131
CviAII CATG 2 cut(s) 715, 745
CviJI RGCY 4 cut(s) 187, 278, 651, 712
CviKI_1 RGCY 4 cut(s) 187, 278, 651, 712
CviQI GTAC 2 cut(s) 45, 525
DdeI CTNAG 6 cut(s) 164, 182, 253, 335, 420, 530
DpnI GATC 3 cut(s) 519, 597, 639
DpnII GATC 3 cut(s) 517, 595, 637
Eam1104I CTCTTC 2 cut(s) 134, 146
EarI CTCTTC 2 cut(s) 134, 146
Eco31I GGTCTC 1 cut(s) 122
Eco47I GGWCC 1 cut(s) 98
Eco81I CCTNAGG 1 cut(s) 182
EcoNI CCTNNNNNAGG 1 cut(s) 419
EcoRI GAATTC 2 cut(s) 325, 668
EcoRII CCWGG 3 cut(s) 66, 100, 617
FaeI CATG 2 cut(s) 718, 748
FaiI YATR 7 cut(s) 606, 614, 662, 716, 746, 753, 760
FalI AAGNNNNNCTT 2 cut(s) 389, 421
FaqI GGGAC 1 cut(s) 519
FatI CATG 2 cut(s) 714, 744
FauI CCCGC 1 cut(s) 554
Fnu4HI GCNGC 1 cut(s) 739
FokI GGATG 4 cut(s) 253, 397, 420, 605
Fsp4HI GCNGC 1 cut(s) 739
GluI GCNGC 1 cut(s) 739
HaeIII GGCC 2 cut(s) 187, 651
HapII CCGG 5 cut(s) 132, 189, 279, 290, 537
Hin1II CATG 2 cut(s) 718, 748
HinfI GANTC 6 cut(s) 286, 368, 532, 546, 626, 701
HpaII CCGG 5 cut(s) 132, 189, 279, 290, 537
HphI GGTGA 1 cut(s) 512
Hpy166II GTNNAC 1 cut(s) 527
Hpy188I TCNGA 6 cut(s) 373, 557, 642, 667, 706, 731
Hpy188III TCNNGA 4 cut(s) 196, 238, 381, 715
Hpy8I GTNNAC 1 cut(s) 527
Hpy99I CGWCG 1 cut(s) 694
HpyAV CCTTC 1 cut(s) 276
HpyCH4III ACNGT 2 cut(s) 98, 524
HpyCH4IV ACGT 4 cut(s) 47, 84, 345, 692
HpyCH4V TGCA 2 cut(s) 244, 738
HpyF3I CTNAG 6 cut(s) 164, 182, 253, 335, 420, 530
HpySE526I ACGT 4 cut(s) 47, 84, 345, 692
Hsp92II CATG 2 cut(s) 718, 748
Kzo9I GATC 3 cut(s) 517, 595, 637
Lsp1109I GCAGC 1 cut(s) 750
LweI GCATC 1 cut(s) 231
MabI ACCWGGT 1 cut(s) 66
MaeII ACGT 4 cut(s) 47, 84, 345, 692
MaeIII GTNAC 1 cut(s) 680
MalI GATC 3 cut(s) 519, 597, 639
MboI GATC 3 cut(s) 517, 595, 637
MflI RGATCY 1 cut(s) 637
MluCI AATT 6 cut(s) 175, 325, 601, 668, 718, 748
MlyI GAGTC 2 cut(s) 541, 555
MseI TTAA 1 cut(s) 504
MslI CAYNNNNRTG 1 cut(s) 239
MspI CCGG 5 cut(s) 132, 189, 279, 290, 537
MspR9I CCNGG 6 cut(s) 68, 102, 189, 291, 537, 619
MvaI CCWGG 3 cut(s) 68, 102, 619
NciI CCSGG 3 cut(s) 189, 291, 537
NdeII GATC 3 cut(s) 517, 595, 637
NlaIII CATG 2 cut(s) 718, 748
NmuCI GTSAC 1 cut(s) 680
NspV TTCGAA 1 cut(s) 21
PagI TCATGA 1 cut(s) 714
PcsI WCGNNNNNNNCGW 1 cut(s) 423
PfeI GAWTC 4 cut(s) 286, 368, 626, 701
PfoI TCCNGGA 1 cut(s) 535
PinAI ACCGGT 1 cut(s) 131
PkrI GCNGC 1 cut(s) 740
PleI GAGTC 2 cut(s) 540, 554
PpsI GAGTC 2 cut(s) 540, 554
Ppu21I YACGTR 1 cut(s) 48
PshAI GACNNNNGTC 1 cut(s) 429
PsiI TTATAA 1 cut(s) 606
Psp6I CCWGG 3 cut(s) 66, 100, 617
PspGI CCWGG 3 cut(s) 66, 100, 617
PspPI GGNCC 2 cut(s) 98, 186
PsuI RGATCY 1 cut(s) 637
RsaI GTAC 2 cut(s) 46, 526
RsaNI GTAC 2 cut(s) 45, 525
RseI CAYNNNNRTG 1 cut(s) 239
SaqAI TTAA 1 cut(s) 504
SatI GCNGC 1 cut(s) 739
Sau3AI GATC 3 cut(s) 517, 595, 637
Sau96I GGNCC 2 cut(s) 98, 186
SchI GAGTC 2 cut(s) 541, 555
ScrFI CCNGG 6 cut(s) 68, 102, 189, 291, 537, 619
SexAI ACCWGGT 1 cut(s) 66
SfaNI GCATC 1 cut(s) 231
SfuI TTCGAA 1 cut(s) 21
SinI GGWCC 1 cut(s) 98
SmiMI CAYNNNNRTG 1 cut(s) 239
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 6 cut(s) 175, 325, 601, 668, 718, 748
SsiI CCGC 1 cut(s) 561
StyD4I CCNGG 6 cut(s) 66, 100, 187, 289, 535, 617
TaaI ACNGT 2 cut(s) 98, 524
TaiI ACGT 4 cut(s) 50, 87, 348, 695
TaqI TCGA 6 cut(s) 21, 380, 549, 629, 657, 689
TasI AATT 6 cut(s) 175, 325, 601, 668, 718, 748
TfiI GAWTC 4 cut(s) 286, 368, 626, 701
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TscAI CASTG 2 cut(s) 502, 534
TseFI GTSAC 1 cut(s) 680
TseI GCWGC 1 cut(s) 738
Tsp45I GTSAC 1 cut(s) 680
TspDTI ATGAA 5 cut(s) 234, 321, 471, 731, 761
TspRI CASTG 2 cut(s) 502, 534
VpaK11BI GGWCC 1 cut(s) 98
XagI CCTNNNNNAGG 1 cut(s) 419
XapI RAATTY 3 cut(s) 325, 668, 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.