Rw4G002290
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0004526
Physical Location & Seq
Forward (+)
4348744 .. 4350176
1433 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G002290.1

Sequence Viewer

Length: 870 bp
ATGGGAAGAAACTCACGTTTCGAAAAGGAGGGATTGAAGAAAGGTATGTGGTCTGCTCGCGAAGACCAGGTTCTCAAGAACTATATGAAAAAGCACGGTCCAGGCAACTGGGGAAAAACAGCAAGGGAGACTGGCAAGTTCATAATTTTCTTCATTTTTACTTTCGACATACAGCAGTGTCTGAAGAGATGTGGGAAGAGTGTGAGACTGAGATGGTTAAATTATCTGAGGCCCGGTATCAAGAAAGGCAACATTACAGAAGATGAAGAAGACCTTATTATCAGGATGCACAAACTCGTAGGCAACAGGTGGTCATTGATAGCAGGAAGGATTCCGGACCGAACAGACAACGAAATAAAAAACTACTGGAACTCCACTCTAAGGAAGAAGCTGGCAGAAGAAAAAGAAAAGGAATCAGAAGTGTCGAGAAACGAGATGATCAAGGAGACCTTGCCATCCCCCGTTGAGGACTATGGTCATCAACATTTGACCAAATGCGATGTAGTTCTTGGCGGAGGAGGAGGATTGATGTGTTTTGCCAGTAATGTTAATGTAGAAGAAGATCATCAGCGTCGTTGTCTTGGCGGTACTAGTACCGATACTACTATTCTGAGTCCCAGAGTGGAAGTGGGAGTCGGAACCGGAGGCGGGGCAAACAATAATGTCGAACCAACTGGGGATGATCTCAATTATAACGCTATGACCTGGAACGATTCGTTAATGGATTTGAATGGAGGCCAACTCTACATGTCTGAATTCCTCCAAACTGACTTTTCGAAGTTTTGGGAAGAAACAGATAGGTTCATGAATTTTGAAGTCGGAGGTTGCAGCACCATTAATCATGAGTTGCCAAATAATTGGGATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

289

Amino Acids

32.96

Weight (kDa)

6.13

Isoelectric Point (pI)

45.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 76 3.5e-08 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 90 1.4e-08 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 82 - 126 1.3e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 86 - 135 1.3e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 693
AccII CGCG 1 cut(s) 60
AccIII TCCGGA 1 cut(s) 334
AciI CCGC 3 cut(s) 513, 585, 648
AcsI RAATTY 2 cut(s) 755, 808
AcuI CTGAAG 1 cut(s) 203
AfaI GTAC 2 cut(s) 589, 595
AfiI CCNNNNNNNGG 3 cut(s) 381, 466, 648
AflIII ACRYGT 1 cut(s) 747
AgsI TTSAA 3 cut(s) 37, 730, 815
AhlI ACTAGT 1 cut(s) 590
AjnI CCWGG 3 cut(s) 66, 100, 704
AluBI AGCT 1 cut(s) 391
AluI AGCT 1 cut(s) 391
Alw26I GTCTC 3 cut(s) 122, 199, 440
AlwNI CAGNNNCTG 1 cut(s) 181
Aor13HI TCCGGA 1 cut(s) 334
AoxI GGCC 2 cut(s) 230, 736
ApeKI GCWGC 1 cut(s) 828
ApoI RAATTY 2 cut(s) 755, 808
AseI ATTAAT 1 cut(s) 837
AspS9I GGNCC 3 cut(s) 98, 231, 337
AsuC2I CCSGG 1 cut(s) 234
AsuII TTCGAA 2 cut(s) 21, 776
AvaII GGWCC 2 cut(s) 98, 337
BbsI GAAGAC 2 cut(s) 69, 276
BbvI GCAGC 1 cut(s) 840
BccI CCATC 3 cut(s) 207, 463, 857
BciT130I CCWGG 3 cut(s) 68, 102, 706
BclI TGATCA 1 cut(s) 438
BcnI CCSGG 1 cut(s) 234
BcoDI GTCTC 3 cut(s) 122, 199, 440
BcuI ACTAGT 1 cut(s) 590
BfaI CTAG 1 cut(s) 591
BisI GCNGC 1 cut(s) 829
BlsI GCNGC 1 cut(s) 830
Bme1390I CCNGG 4 cut(s) 68, 102, 234, 706
Bme18I GGWCC 2 cut(s) 98, 337
BmgT120I GGNCC 3 cut(s) 98, 231, 337
BmiI GGNNCC 1 cut(s) 640
BmrFI CCNGG 4 cut(s) 68, 102, 234, 706
BmrI ACTGGG 2 cut(s) 118, 684
BmsI GCATC 1 cut(s) 276
BmuI ACTGGG 2 cut(s) 118, 684
BoxI GACNNNNGTC 1 cut(s) 474
BpiI GAAGAC 2 cut(s) 69, 276
BplI GAGNNNNNCTC 2 cut(s) 726, 758
Bpu14I TTCGAA 2 cut(s) 21, 776
BpuEI CTTGAG 1 cut(s) 59
BpuMI CCSGG 1 cut(s) 234
BsaI GGTCTC 1 cut(s) 440
BsaWI WCCGGW 2 cut(s) 334, 641
BsaXI ACNNNNNCTCC 2 cut(s) 356, 386
Bsc4I CCNNNNNNNGG 3 cut(s) 381, 466, 648
Bse1I ACTGG 5 cut(s) 113, 136, 371, 540, 679
BseAI TCCGGA 1 cut(s) 334
BseBI CCWGG 3 cut(s) 68, 102, 706
BseGI GGATG 4 cut(s) 291, 455, 685, 868
BseLI CCNNNNNNNGG 3 cut(s) 381, 466, 648
BseMII CTCAG 3 cut(s) 200, 218, 602
BseNI ACTGG 5 cut(s) 113, 136, 371, 540, 679
BseRI GAGGAG 2 cut(s) 531, 534
BseXI GCAGC 1 cut(s) 840
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 2 cut(s) 232, 738
BsiSI CCGG 3 cut(s) 234, 335, 642
BslFI GGGAC 1 cut(s) 600
BslI CCNNNNNNNGG 3 cut(s) 381, 466, 648
BsmAI GTCTC 3 cut(s) 122, 199, 440
BsmFI GGGAC 1 cut(s) 600
BsnI GGCC 2 cut(s) 232, 738
Bso31I GGTCTC 1 cut(s) 440
Bsp119I TTCGAA 2 cut(s) 21, 776
Bsp13I TCCGGA 1 cut(s) 334
Bsp143I GATC 3 cut(s) 438, 562, 682
Bsp68I TCGCGA 1 cut(s) 60
BspACI CCGC 3 cut(s) 513, 585, 648
BspANI GGCC 2 cut(s) 232, 738
BspCNI CTCAG 3 cut(s) 201, 219, 603
BspEI TCCGGA 1 cut(s) 334
BspFNI CGCG 1 cut(s) 60
BspHI TCATGA 2 cut(s) 804, 841
BspLI GGNNCC 1 cut(s) 640
BspT104I TTCGAA 2 cut(s) 21, 776
BspTNI GGTCTC 1 cut(s) 440
BsrI ACTGG 5 cut(s) 113, 136, 371, 540, 679
BssMI GATC 3 cut(s) 438, 562, 682
Bst2UI CCWGG 3 cut(s) 68, 102, 706
Bst4CI ACNGT 1 cut(s) 98
Bst6I CTCTTC 2 cut(s) 179, 191
BstBI TTCGAA 2 cut(s) 21, 776
BstC8I GCNNGC 2 cut(s) 58, 393
BstDEI CTNAG 4 cut(s) 209, 227, 380, 611
BstF5I GGATG 4 cut(s) 291, 455, 685, 868
BstFNI CGCG 1 cut(s) 60
BstKTI GATC 3 cut(s) 441, 565, 685
BstMAI GTCTC 3 cut(s) 122, 199, 440
BstMBI GATC 3 cut(s) 438, 562, 682
BstNI CCWGG 3 cut(s) 68, 102, 706
BstNSI RCATGY 1 cut(s) 751
BstPAI GACNNNNGTC 1 cut(s) 474
BstSCI CCNGG 4 cut(s) 66, 100, 232, 704
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 840
BstV2I GAAGAC 2 cut(s) 69, 276
BstXI CCANNNNNNTGG 2 cut(s) 108, 858
BsuRI GGCC 2 cut(s) 232, 738
BtgZI GCGATG 1 cut(s) 513
BtsCI GGATG 4 cut(s) 291, 455, 685, 868
BtsI GCAGTG 1 cut(s) 182
BtsIMutI CAGTG 1 cut(s) 182
BtuMI TCGCGA 1 cut(s) 60
Cac8I GCNNGC 2 cut(s) 58, 393
CaiI CAGNNNCTG 1 cut(s) 181
CciI TCATGA 2 cut(s) 804, 841
Cfr13I GGNCC 3 cut(s) 98, 231, 337
CpoI CGGWCCG 1 cut(s) 337
CseI GACGC 1 cut(s) 560
CsiI ACCWGGT 1 cut(s) 66
Csp6I GTAC 2 cut(s) 588, 594
CspI CGGWCCG 1 cut(s) 337
CviAII CATG 3 cut(s) 748, 805, 842
CviJI RGCY 3 cut(s) 232, 391, 738
CviKI_1 RGCY 3 cut(s) 232, 391, 738
CviQI GTAC 2 cut(s) 588, 594
DdeI CTNAG 4 cut(s) 209, 227, 380, 611
DpnI GATC 3 cut(s) 440, 564, 684
DpnII GATC 3 cut(s) 438, 562, 682
Eam1104I CTCTTC 2 cut(s) 179, 191
EarI CTCTTC 2 cut(s) 179, 191
EciI GGCGGA 1 cut(s) 528
Eco31I GGTCTC 1 cut(s) 440
Eco47I GGWCC 2 cut(s) 98, 337
Eco57I CTGAAG 1 cut(s) 203
EcoRI GAATTC 1 cut(s) 755
EcoRII CCWGG 3 cut(s) 66, 100, 704
FaeI CATG 3 cut(s) 751, 808, 845
FalI AAGNNNNNCTT 4 cut(s) 258, 290, 434, 466
FaqI GGGAC 1 cut(s) 600
FatI CATG 3 cut(s) 747, 804, 841
FauI CCCGC 1 cut(s) 641
FbaI TGATCA 1 cut(s) 438
Fnu4HI GCNGC 1 cut(s) 829
FokI GGATG 3 cut(s) 298, 442, 692
Fsp4HI GCNGC 1 cut(s) 829
FspBI CTAG 1 cut(s) 591
GluI GCNGC 1 cut(s) 829
HaeIII GGCC 2 cut(s) 232, 738
HapII CCGG 3 cut(s) 234, 335, 642
HgaI GACGC 1 cut(s) 560
Hin1II CATG 3 cut(s) 751, 808, 845
HinfI GANTC 5 cut(s) 331, 413, 613, 633, 713
HpaII CCGG 3 cut(s) 234, 335, 642
Hpy188I TCNGA 7 cut(s) 183, 228, 418, 612, 638, 754, 821
Hpy188III TCNNGA 8 cut(s) 59, 76, 241, 283, 335, 426, 805, 842
Hpy99I CGWCG 1 cut(s) 576
HpyAV CCTTC 1 cut(s) 321
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4IV ACGT 1 cut(s) 16
HpyCH4V TGCA 2 cut(s) 289, 828
HpyF3I CTNAG 4 cut(s) 209, 227, 380, 611
HpySE526I ACGT 1 cut(s) 16
Hsp92II CATG 3 cut(s) 751, 808, 845
Kpn2I TCCGGA 1 cut(s) 334
Ksp22I TGATCA 1 cut(s) 438
Kzo9I GATC 3 cut(s) 438, 562, 682
Lsp1109I GCAGC 1 cut(s) 840
LweI GCATC 1 cut(s) 276
MabI ACCWGGT 1 cut(s) 66
MaeI CTAG 1 cut(s) 591
MaeII ACGT 1 cut(s) 16
MalI GATC 3 cut(s) 440, 564, 684
MboI GATC 3 cut(s) 438, 562, 682
MluCI AATT 6 cut(s) 144, 220, 688, 755, 808, 856
MlyI GAGTC 2 cut(s) 622, 642
MmeI TCCRAC 2 cut(s) 616, 799
MroI TCCGGA 1 cut(s) 334
MseI TTAA 5 cut(s) 218, 549, 719, 837, 868
MspI CCGG 3 cut(s) 234, 335, 642
MspR9I CCNGG 4 cut(s) 68, 102, 234, 706
MvaI CCWGG 3 cut(s) 68, 102, 706
MvnI CGCG 1 cut(s) 60
NciI CCSGG 1 cut(s) 234
NdeII GATC 3 cut(s) 438, 562, 682
NlaIII CATG 3 cut(s) 751, 808, 845
NlaIV GGNNCC 1 cut(s) 640
NruI TCGCGA 1 cut(s) 60
NspI RCATGY 1 cut(s) 751
NspV TTCGAA 2 cut(s) 21, 776
PagI TCATGA 2 cut(s) 804, 841
PciI ACATGT 1 cut(s) 747
PfeI GAWTC 3 cut(s) 331, 413, 713
PkrI GCNGC 1 cut(s) 830
PleI GAGTC 2 cut(s) 621, 641
PpsI GAGTC 2 cut(s) 621, 641
PscI ACATGT 1 cut(s) 747
PshAI GACNNNNGTC 1 cut(s) 474
PshBI ATTAAT 1 cut(s) 837
PsiI TTATAA 1 cut(s) 693
Psp6I CCWGG 3 cut(s) 66, 100, 704
PspGI CCWGG 3 cut(s) 66, 100, 704
PspN4I GGNNCC 1 cut(s) 640
PspPI GGNCC 3 cut(s) 98, 231, 337
PstNI CAGNNNCTG 1 cut(s) 181
RruI TCGCGA 1 cut(s) 60
RsaI GTAC 2 cut(s) 589, 595
RsaNI GTAC 2 cut(s) 588, 594
Rsr2I CGGWCCG 1 cut(s) 337
RsrII CGGWCCG 1 cut(s) 337
SaqAI TTAA 5 cut(s) 218, 549, 719, 837, 868
SatI GCNGC 1 cut(s) 829
Sau3AI GATC 3 cut(s) 438, 562, 682
Sau96I GGNCC 3 cut(s) 98, 231, 337
SchI GAGTC 2 cut(s) 622, 642
ScrFI CCNGG 4 cut(s) 68, 102, 234, 706
SexAI ACCWGGT 1 cut(s) 66
SfaNI GCATC 1 cut(s) 276
SfuI TTCGAA 2 cut(s) 21, 776
SinI GGWCC 2 cut(s) 98, 337
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
SpeI ACTAGT 1 cut(s) 590
Sse9I AATT 6 cut(s) 144, 220, 688, 755, 808, 856
SsiI CCGC 3 cut(s) 513, 585, 648
SspMI CTAG 1 cut(s) 591
StyD4I CCNGG 4 cut(s) 66, 100, 232, 704
TaaI ACNGT 1 cut(s) 98
TaiI ACGT 1 cut(s) 19
TaqI TCGA 5 cut(s) 21, 165, 425, 666, 776
TaqII GACCGA 1 cut(s) 354
TasI AATT 6 cut(s) 144, 220, 688, 755, 808, 856
TfiI GAWTC 3 cut(s) 331, 413, 713
Tru1I TTAA 5 cut(s) 218, 549, 719, 837, 868
Tru9I TTAA 5 cut(s) 218, 549, 719, 837, 868
TscAI CASTG 1 cut(s) 182
TseI GCWGC 1 cut(s) 828
TspDTI ATGAA 6 cut(s) 101, 130, 142, 279, 793, 821
TspRI CASTG 1 cut(s) 182
VpaK11BI GGWCC 2 cut(s) 98, 337
VspI ATTAAT 1 cut(s) 837
XapI RAATTY 2 cut(s) 755, 808
XceI RCATGY 1 cut(s) 751
XcmI CCANNNNNNNNNTGG 1 cut(s) 625
XspI CTAG 1 cut(s) 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.