Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004526

Physical Location & Seq

Genomic Coordinates Forward (+)

35941190 .. 35944974

Gene Structure 3785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0326000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGATTCCCACTCCTTATCATCATCCGACGGTGGTCGGAGTACTTGTTGCGCCTCGCCGCCCTCCCCATCCGTCCGTCGTGCGTTGGAACTAATCCAATCCGACGACCACGCTTTCAAGCTCCAGGGTGCCCAGGAAATTCGACGCCTCACCAAAACCTCTCAGAGGTGTCGGCGCCAACTCTCCGACTCTGTGGGCCCACTCGTCTCCATGCTCCGAGTTCACGACTCCCCCGACTTTCATGAGTCCGCCCTCCTCGCCCTCCTCAACCTCGCCGTCAAGGATGACACGAACAAAATAAAGATTGTGGAAGCTGGTGCTTTAGAACCGATAATTACTTTCCTTCAGTCAGAAAATTCCAATCTGCAGGAGTATGCAACTGCATCTCTACTCACCTTATCAGCTTCTGCCTCTAACAAGCCAGTCATAAGTGCCTGCGGTGCCATTCCTCTTCTTGTTGAAATCCTTAGAGATGGAAGCCCACAAGCCAAAGTTGATTCTGTTATGGCTCTTTCCAATCTCTCAACCCATGCAATTAACCTTAGCATCATTCTTGAAGCGAAACCAGTCCCTTGTATAGTTACTCTGTTAAAAACCTGCAAAAAATCTTCAAAGACAGCTGAAAAATGCTGTGCTCTAATAGAATCTTTAATGGGCTTTGATGAGGGTAGAACTGCCTTGACATCCGAAGAAGGTGGAGTGCTTGCAGTTATTGAGGTGCTTGAAAGTGGATCACTTCAAAGTCGAGAGCATGCTGTTGGTGCTCTACTAACAATGTGTCAAAGTGACAGATGCAAATATAGAGAAGCACTTCTTAAAGAAGGGGTAATCCCTGGACTTCTTGAGCTCACTGTTCAAGGAACAGCCAAGTCTCAGTCAAAAGCACAGACACTTTTGCGATTACTGAGGGAGTCCCCATACCCACGATCTGAGCTTGAACCGGACACACTCGAGAATATTGTGTCCAACATTATCTCTCAGATTGATGGTGAGGATCAGTCAGGCAAAGCAAAGAAGATGCTAGCTGAGATGGTTCAAGTTAGCATGGAACAGAGCTTGAGACATTTACAGCAAAGGGCTCTGGTATGCACACCAACTGATCTCCCTATCAATAGTTGTACCTCTGAGGTTCCTTTAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

380

Amino Acids

41.0

Weight (kDa)

5.89

Isoelectric Point (pI)

62.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_ARMC5	PF24768	29 - 163	8.6e-09	ARMC5
ARM_PUB	PF25598	44 - 304	1e-15	Plant U-box protein ARM repeat region
ARM_ARMC5	PF24768	170 - 342	4.6e-07	ARMC5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004526)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31070 FvH4_2g31070 FvH4_4g02400
rosa_chinensis	RchiOBHm_Chr4g0389841 RchiOBHm_Chr5g0019651 RchiOBHm_Chr6g0311731
rosa_laevigata	RLG00000009947 RLG00000010379
rosa_multiflora	Rmu_co8139852.1_g000001 Rmu_sc0002702.1_g000022 Rmu_sc0002888.1_g000030 Rmu_sc0030932.1_g000007
rosa_roxburghii	Rroxscaffold_1G00058440 Rroxscaffold_5G00335890 Rroxscaffold_5G00335920 Rroxscaffold_7G00157360
rosa_rugosa	Rorug03G0325700 Rorug03G0326000 Rorug03G0326100 Rorug03G0326200 Rorug05G0052400
rosa_samantha	Rh4AG030400 Rh4BG023600 Rh4CG033000 Rh5AG143000 Rh5BG141600 Rh5CG153600 Rh6BG517200 Rh6DG508800
rosa_wichuraiana	Rw4G002290 Rw5G012670 Rw6G044060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	605
AccB1I	GGYRCC	3 cut(s)	128, 174, 440
AciI	CCGC	3 cut(s)	59, 249, 438
AclWI	GGATC	2 cut(s)	739, 1002
AcsI	RAATTY	2 cut(s)	138, 355
AcuI	CTGAAG	1 cut(s)	329
AcyI	GRCGYC	2 cut(s)	145, 175
AfaI	GTAC	2 cut(s)	43, 1120
AfiI	CCNNNNNNNGG	1 cut(s)	165
AgsI	TTSAA	9 cut(s)	118, 461, 557, 612, 725, 740, 857, 938, 1037
AjnI	CCWGG	3 cut(s)	123, 132, 832
AluBI	AGCT	8 cut(s)	121, 314, 404, 620, 847, 934, 1025, 1056
AluI	AGCT	8 cut(s)	121, 314, 404, 620, 847, 934, 1025, 1056
Alw21I	GWGCWC	3 cut(s)	637, 766, 849
Alw26I	GTCTC	3 cut(s)	211, 876, 1054
AlwI	GGATC	2 cut(s)	739, 1002
AlwNI	CAGNNNCTG	1 cut(s)	407
Ama87I	CYCGRG	1 cut(s)	950
AoxI	GGCC	1 cut(s)	196
ApaI	GGGCCC	1 cut(s)	200
ApoI	RAATTY	2 cut(s)	138, 355
Asp700I	GAANNNNTTC	1 cut(s)	810
AspLEI	GCGC	2 cut(s)	53, 177
AspS9I	GGNCC	2 cut(s)	196, 197
AsuHPI	GGTGA	3 cut(s)	142, 385, 1001
AsuNHI	GCTAGC	1 cut(s)	1021
AvaI	CYCGRG	1 cut(s)	950
BaeGI	GKGCMC	2 cut(s)	133, 200
BanI	GGYRCC	3 cut(s)	128, 174, 440
BanII	GRGCYC	3 cut(s)	200, 849, 1081
Bbv12I	GWGCWC	3 cut(s)	637, 766, 849
BccI	CCATC	4 cut(s)	76, 467, 980, 1024
BceAI	ACGGC	1 cut(s)	260
BciT130I	CCWGG	3 cut(s)	125, 134, 834
BcoDI	GTCTC	3 cut(s)	211, 876, 1054
BfaI	CTAG	1 cut(s)	1022
BfmI	CTRYAG	1 cut(s)	365
BfoI	RGCGCY	1 cut(s)	178
BfuAI	ACCTGC	1 cut(s)	605
BisI	GCNGC	1 cut(s)	59
BlsI	GCNGC	1 cut(s)	60
BmcAI	AGTACT	1 cut(s)	43
Bme1390I	CCNGG	3 cut(s)	125, 134, 834
BmeT110I	CYCGRG	1 cut(s)	950
BmgT120I	GGNCC	2 cut(s)	196, 197
BmiI	GGNNCC	5 cut(s)	130, 176, 198, 442, 1131
BmrFI	CCNGG	3 cut(s)	125, 134, 834
BmsI	GCATC	4 cut(s)	392, 555, 782, 1008
BmtI	GCTAGC	1 cut(s)	1025
BoxI	GACNNNNGTC	1 cut(s)	33
BpmI	CTGGAG	1 cut(s)	107
Bpu10I	CCTNAGC	1 cut(s)	542
BpuEI	CTTGAG	2 cut(s)	863, 1078
BsaHI	GRCGYC	2 cut(s)	145, 175
BsaJI	CCNNGG	3 cut(s)	124, 132, 832
BsaWI	WCCGGW	1 cut(s)	940
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bsc4I	CCNNNNNNNGG	1 cut(s)	165
Bse1I	ACTGG	2 cut(s)	422, 566
BseBI	CCWGG	3 cut(s)	125, 134, 834
BseDI	CCNNGG	3 cut(s)	124, 132, 832
BseGI	GGATG	4 cut(s)	23, 68, 289, 683
BseLI	CCNNNNNNNGG	1 cut(s)	165
BseMII	CTCAG	7 cut(s)	176, 887, 896, 921, 992, 1017, 1116
BseNI	ACTGG	2 cut(s)	422, 566
BseRI	GAGGAG	2 cut(s)	245, 254
BseSI	GKGCMC	2 cut(s)	133, 200
BshFI	GGCC	1 cut(s)	198
BshNI	GGYRCC	3 cut(s)	128, 174, 440
BsiHKAI	GWGCWC	3 cut(s)	637, 766, 849
BsiHKCI	CYCGRG	1 cut(s)	950
BsiSI	CCGG	1 cut(s)	941
BslFI	GGGAC	2 cut(s)	554, 898
BslI	CCNNNNNNNGG	1 cut(s)	165
BsmAI	GTCTC	3 cut(s)	211, 876, 1054
BsmBI	CGTCTC	1 cut(s)	211
BsmFI	GGGAC	2 cut(s)	554, 898
BsnI	GGCC	1 cut(s)	198
BsoBI	CYCGRG	1 cut(s)	950
Bsp120I	GGGCCC	1 cut(s)	196
Bsp1286I	GDGCHC	6 cut(s)	133, 200, 637, 766, 849, 1081
Bsp143I	GATC	4 cut(s)	731, 926, 994, 1099
BspACI	CCGC	3 cut(s)	59, 249, 438
BspANI	GGCC	1 cut(s)	198
BspCNI	CTCAG	7 cut(s)	175, 886, 897, 922, 991, 1018, 1117
BspHI	TCATGA	1 cut(s)	241
BspLI	GGNNCC	5 cut(s)	130, 176, 198, 442, 1131
BspMAI	CTGCAG	1 cut(s)	369
BspMI	ACCTGC	1 cut(s)	605
BspOI	GCTAGC	1 cut(s)	1025
BspPI	GGATC	2 cut(s)	739, 1002
BspT107I	GGYRCC	3 cut(s)	128, 174, 440
BsrI	ACTGG	2 cut(s)	422, 566
BssECI	CCNNGG	3 cut(s)	124, 132, 832
BssMI	GATC	4 cut(s)	731, 926, 994, 1099
BssNI	GRCGYC	2 cut(s)	145, 175
Bst2UI	CCWGG	3 cut(s)	125, 134, 834
Bst4CI	ACNGT	2 cut(s)	32, 853
Bst6I	CTCTTC	1 cut(s)	456
BstACI	GRCGYC	2 cut(s)	145, 175
BstC8I	GCNNGC	4 cut(s)	436, 705, 753, 1023
BstDEI	CTNAG	9 cut(s)	162, 467, 542, 873, 905, 930, 978, 1026, 1125
BstENI	CCTNNNNNAGG	1 cut(s)	163
BstF5I	GGATG	4 cut(s)	23, 68, 289, 683
BstH2I	RGCGCY	1 cut(s)	178
BstHHI	GCGC	2 cut(s)	53, 177
BstKTI	GATC	4 cut(s)	734, 929, 997, 1102
BstMAI	GTCTC	3 cut(s)	211, 876, 1054
BstMBI	GATC	4 cut(s)	731, 926, 994, 1099
BstMWI	GCNNNNNNNGC	3 cut(s)	257, 440, 761
BstNI	CCWGG	3 cut(s)	125, 134, 834
BstNSI	RCATGY	1 cut(s)	755
BstPAI	GACNNNNGTC	1 cut(s)	33
BstSCI	CCNGG	3 cut(s)	123, 132, 832
BstSFI	CTRYAG	1 cut(s)	365
BstSLI	GKGCMC	2 cut(s)	133, 200
BsuRI	GGCC	1 cut(s)	198
BtsCI	GGATG	4 cut(s)	23, 68, 289, 683
BtsIMutI	CAGTG	1 cut(s)	849
BveI	ACCTGC	1 cut(s)	605
Cac8I	GCNNGC	4 cut(s)	436, 705, 753, 1023
CaiI	CAGNNNCTG	1 cut(s)	407
CciI	TCATGA	1 cut(s)	241
CfoI	GCGC	2 cut(s)	53, 177
Cfr13I	GGNCC	2 cut(s)	196, 197
CseI	GACGC	1 cut(s)	153
Csp6I	GTAC	2 cut(s)	42, 1119
CviAII	CATG	5 cut(s)	211, 242, 530, 752, 1045
CviQI	GTAC	2 cut(s)	42, 1119
DdeI	CTNAG	9 cut(s)	162, 467, 542, 873, 905, 930, 978, 1026, 1125
DinI	GGCGCC	1 cut(s)	176
DpnI	GATC	4 cut(s)	733, 928, 996, 1101
DpnII	GATC	4 cut(s)	731, 926, 994, 1099
DraI	TTTAAA	1 cut(s)	1137
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
EciI	GGCGGA	1 cut(s)	238
Ecl136II	GAGCTC	1 cut(s)	847
Eco24I	GRGCYC	3 cut(s)	200, 849, 1081
Eco53kI	GAGCTC	1 cut(s)	847
Eco57I	CTGAAG	1 cut(s)	329
Eco88I	CYCGRG	1 cut(s)	950
EcoICRI	GAGCTC	1 cut(s)	847
EcoNI	CCTNNNNNAGG	1 cut(s)	163
EcoRII	CCWGG	3 cut(s)	123, 132, 832
EcoT38I	GRGCYC	3 cut(s)	200, 849, 1081
EgeI	GGCGCC	1 cut(s)	176
EheI	GGCGCC	1 cut(s)	176
Esp3I	CGTCTC	1 cut(s)	211
FaeI	CATG	5 cut(s)	214, 245, 533, 755, 1048
FalI	AAGNNNNNCTT	2 cut(s)	798, 830
FaqI	GGGAC	2 cut(s)	554, 898
FatI	CATG	5 cut(s)	210, 241, 529, 751, 1044
Fnu4HI	GCNGC	1 cut(s)	59
FokI	GGATG	4 cut(s)	10, 55, 296, 670
FriOI	GRGCYC	3 cut(s)	200, 849, 1081
Fsp4HI	GCNGC	1 cut(s)	59
FspBI	CTAG	1 cut(s)	1022
GlaI	GCGC	2 cut(s)	52, 176
GluI	GCNGC	1 cut(s)	59
GsuI	CTGGAG	1 cut(s)	107
HaeII	RGCGCY	1 cut(s)	178
HaeIII	GGCC	1 cut(s)	198
HapII	CCGG	1 cut(s)	941
HgaI	GACGC	1 cut(s)	153
HhaI	GCGC	2 cut(s)	53, 177
Hin1I	GRCGYC	2 cut(s)	145, 175
Hin1II	CATG	5 cut(s)	214, 245, 533, 755, 1048
Hin6I	GCGC	2 cut(s)	51, 175
HinP1I	GCGC	2 cut(s)	51, 175
HinfI	GANTC	7 cut(s)	5, 188, 227, 245, 497, 644, 911
HpaII	CCGG	1 cut(s)	941
HphI	GGTGA	3 cut(s)	142, 385, 1001
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188III	TCNNGA	6 cut(s)	224, 242, 554, 746, 842, 952
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	4 cut(s)	32, 81, 107, 147
HpyAV	CCTTC	3 cut(s)	353, 686, 815
HpyCH4III	ACNGT	2 cut(s)	32, 853
HpyCH4V	TGCA	8 cut(s)	367, 377, 383, 533, 600, 707, 795, 1089
HpyF10VI	GCNNNNNNNGC	3 cut(s)	257, 440, 761
HpyF3I	CTNAG	9 cut(s)	162, 467, 542, 873, 905, 930, 978, 1026, 1125
Hsp92I	GRCGYC	2 cut(s)	145, 175
Hsp92II	CATG	5 cut(s)	214, 245, 533, 755, 1048
HspAI	GCGC	2 cut(s)	51, 175
KasI	GGCGCC	1 cut(s)	174
Kzo9I	GATC	4 cut(s)	731, 926, 994, 1099
LmnI	GCTCC	2 cut(s)	126, 219
LweI	GCATC	4 cut(s)	392, 555, 782, 1008
MaeI	CTAG	1 cut(s)	1022
MaeIII	GTNAC	2 cut(s)	580, 785
MalI	GATC	4 cut(s)	733, 928, 996, 1101
MboI	GATC	4 cut(s)	731, 926, 994, 1099
MboII	GAAGA	4 cut(s)	443, 600, 701, 1027
MhlI	GDGCHC	6 cut(s)	133, 200, 637, 766, 849, 1081
MluCI	AATT	4 cut(s)	138, 333, 355, 534
Mly113I	GGCGCC	1 cut(s)	175
MlyI	GAGTC	4 cut(s)	182, 221, 254, 920
MmeI	TCCRAC	6 cut(s)	17, 51, 66, 126, 210, 990
MroXI	GAANNNNTTC	1 cut(s)	810
MseI	TTAA	5 cut(s)	537, 590, 650, 816, 1136
MspA1I	CMGCKG	1 cut(s)	620
MspI	CCGG	1 cut(s)	941
MspR9I	CCNGG	3 cut(s)	125, 134, 834
MvaI	CCWGG	3 cut(s)	125, 134, 834
MwoI	GCNNNNNNNGC	3 cut(s)	257, 440, 761
NarI	GGCGCC	1 cut(s)	175
NdeII	GATC	4 cut(s)	731, 926, 994, 1099
NheI	GCTAGC	1 cut(s)	1021
NlaIII	CATG	5 cut(s)	214, 245, 533, 755, 1048
NlaIV	GGNNCC	5 cut(s)	130, 176, 198, 442, 1131
NmuCI	GTSAC	1 cut(s)	785
NspI	RCATGY	1 cut(s)	755
PaeI	GCATGC	1 cut(s)	755
PaeR7I	CTCGAG	1 cut(s)	950
PagI	TCATGA	1 cut(s)	241
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PdmI	GAANNNNTTC	1 cut(s)	810
PfeI	GAWTC	3 cut(s)	5, 497, 644
PkrI	GCNGC	1 cut(s)	60
PleI	GAGTC	4 cut(s)	182, 221, 253, 919
PluTI	GGCGCC	1 cut(s)	178
PpsI	GAGTC	4 cut(s)	182, 221, 253, 919
PshAI	GACNNNNGTC	1 cut(s)	33
Psp124BI	GAGCTC	1 cut(s)	849
Psp6I	CCWGG	3 cut(s)	123, 132, 832
PspGI	CCWGG	3 cut(s)	123, 132, 832
PspN4I	GGNNCC	5 cut(s)	130, 176, 198, 442, 1131
PspOMI	GGGCCC	1 cut(s)	196
PspPI	GGNCC	2 cut(s)	196, 197
PstI	CTGCAG	1 cut(s)	369
PstNI	CAGNNNCTG	1 cut(s)	407
PvuII	CAGCTG	1 cut(s)	620
RsaI	GTAC	2 cut(s)	43, 1120
RsaNI	GTAC	2 cut(s)	42, 1119
SacI	GAGCTC	1 cut(s)	849
SaqAI	TTAA	5 cut(s)	537, 590, 650, 816, 1136
SatI	GCNGC	1 cut(s)	59
Sau3AI	GATC	4 cut(s)	731, 926, 994, 1099
Sau96I	GGNCC	2 cut(s)	196, 197
ScaI	AGTACT	1 cut(s)	43
SchI	GAGTC	4 cut(s)	182, 221, 254, 920
ScrFI	CCNGG	3 cut(s)	125, 134, 834
SduI	GDGCHC	6 cut(s)	133, 200, 637, 766, 849, 1081
SfaNI	GCATC	4 cut(s)	392, 555, 782, 1008
SfcI	CTRYAG	1 cut(s)	365
SfoI	GGCGCC	1 cut(s)	176
Sfr274I	CTCGAG	1 cut(s)	950
SlaI	CTCGAG	1 cut(s)	950
SmlI	CTYRAG	3 cut(s)	842, 950, 1057
SmoI	CTYRAG	3 cut(s)	842, 950, 1057
SphI	GCATGC	1 cut(s)	755
Sse9I	AATT	4 cut(s)	138, 333, 355, 534
SsiI	CCGC	3 cut(s)	59, 249, 438
SspDI	GGCGCC	1 cut(s)	174
SspI	AATATT	1 cut(s)	958
SspMI	CTAG	1 cut(s)	1022
SstI	GAGCTC	1 cut(s)	849
StyD4I	CCNGG	3 cut(s)	123, 132, 832
TaaI	ACNGT	2 cut(s)	32, 853
TaqI	TCGA	3 cut(s)	142, 745, 951
TasI	AATT	4 cut(s)	138, 333, 355, 534
TatI	WGTACW	1 cut(s)	41
TauI	GCSGC	1 cut(s)	61
TfiI	GAWTC	3 cut(s)	5, 497, 644
Tru1I	TTAA	5 cut(s)	537, 590, 650, 816, 1136
Tru9I	TTAA	5 cut(s)	537, 590, 650, 816, 1136
TscAI	CASTG	1 cut(s)	856
TseFI	GTSAC	1 cut(s)	785
Tsp45I	GTSAC	1 cut(s)	785
TspDTI	ATGAA	1 cut(s)	230
TspGWI	ACGGA	2 cut(s)	61, 65
TspRI	CASTG	1 cut(s)	856
XagI	CCTNNNNNAGG	1 cut(s)	163
XapI	RAATTY	2 cut(s)	138, 355
XceI	RCATGY	1 cut(s)	755
XhoI	CTCGAG	1 cut(s)	950
XmnI	GAANNNNTTC	1 cut(s)	810
XspI	CTAG	1 cut(s)	1022
ZrmI	AGTACT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.