Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004526

Physical Location & Seq

Genomic Coordinates Reverse (-)

1136905 .. 1138109

Gene Structure 1205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010379

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCAAGAAGCTCTCGCTTCGAAAAGGAGGGAATGAAGAAAGGAGCGTGGACCGCCCGAGAAGACCAGATTCTGATAGACTACGTCAAAAAGCACGGTGAAGGCAAATGGGGAAAAATTTCAAAAGAAACAGGCCTGAAAAGATGTGGGAAGAGTGTGAGACTTAGATGGTTGAATTATTTGAGGCCTGATATTAAGAGAGGCAACATTGCAGATGATGAAGAGGAGCTCATCATCAGGCTCCACAGACTTTTGGGCAACAGATGGTCATTGATAGCCGGAAGAATACCTGGCCGAACTGACAATGAGATTAAAAACTACTGGAATTCCACTCTAAGGAGGAAGCTACGGCAAGAAAATCACTTAAATGAGATTAAGGAGAACTCCTCATCCCCCAGCGGCAGCGGCGCCGCCGAGGAAGACCCACATTCGACCAAAAATAATGGAGGGGTTGGAGGAGGGATGGTGGAACCAACACGCTCCTACTGCTTCACCAATCACAATGTTAAGAAAGAAGATCATCAGCGTTGTCATCTTGAAAGTACCACCACTAGTACTACAAATAAAACAATATTTTTCTCCGGTGCCACCGTTGAAGCCGAAGCAAACAAGAATGATATAGAGCTAGCTGGAGACGACTTGAGCAATGATGTGACGTGGAATGATTTCATAATGGATCTAAATGAAGGTCAGTTAGCCATATCTGAATTTCTCCAAACAGAGTTTTCAAGGCTTTGTGAATCGGAGAGTCCCATGAAGGTAGAAGTTGGAGGTTGCAGCACCAATCATGAGCTGCCAAATAATTGGGCAGGCGGCCGCAGCCCCCGAGAGTTATCTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

281

Amino Acids

31.6

Weight (kDa)

6.73

Isoelectric Point (pI)

49.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	3.7e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 75	1.6e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	71 - 111	6.1e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	72 - 120	7.9e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004526)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31070 FvH4_2g31070 FvH4_4g02400
rosa_chinensis	RchiOBHm_Chr4g0389841 RchiOBHm_Chr5g0019651 RchiOBHm_Chr6g0311731
rosa_laevigata	RLG00000009947 RLG00000010379
rosa_multiflora	Rmu_co8139852.1_g000001 Rmu_sc0002702.1_g000022 Rmu_sc0002888.1_g000030 Rmu_sc0030932.1_g000007
rosa_roxburghii	Rroxscaffold_1G00058440 Rroxscaffold_5G00335890 Rroxscaffold_5G00335920 Rroxscaffold_7G00157360
rosa_rugosa	Rorug03G0325700 Rorug03G0326000 Rorug03G0326100 Rorug03G0326200 Rorug05G0052400
rosa_samantha	Rh4AG030400 Rh4BG023600 Rh4CG033000 Rh5AG143000 Rh5BG141600 Rh5CG153600 Rh6BG517200 Rh6DG508800
rosa_wichuraiana	Rw4G002290 Rw5G012670 Rw6G044060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	407, 584
AciI	CCGC	6 cut(s)	54, 399, 405, 411, 813, 817
AclWI	GGATC	1 cut(s)	684
AcoI	YGGCCR	2 cut(s)	292, 814
AcsI	RAATTY	3 cut(s)	117, 325, 707
AcyI	GRCGYC	1 cut(s)	408
AfaI	GTAC	2 cut(s)	544, 556
AfiI	CCNNNNNNNGG	1 cut(s)	336
AgsI	TTSAA	5 cut(s)	123, 175, 539, 596, 729
AhlI	ACTAGT	1 cut(s)	551
AjiI	CACGTC	1 cut(s)	657
AjnI	CCWGG	1 cut(s)	289
AloI	GAACNNNNNNTCC	2 cut(s)	374, 406
AluBI	AGCT	6 cut(s)	12, 229, 346, 625, 629, 793
AluI	AGCT	6 cut(s)	12, 229, 346, 625, 629, 793
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	2 cut(s)	154, 627
AlwI	GGATC	1 cut(s)	684
AlwNI	CAGNNNCTG	1 cut(s)	73
Ama87I	CYCGRG	2 cut(s)	57, 825
AoxI	GGCC	4 cut(s)	133, 185, 292, 814
ApeKI	GCWGC	4 cut(s)	402, 777, 793, 819
ApoI	RAATTY	3 cut(s)	117, 325, 707
Asp700I	GAANNNNTTC	2 cut(s)	118, 665
AspLEI	GCGC	1 cut(s)	410
AspS9I	GGNCC	1 cut(s)	51
AsuHPI	GGTGA	2 cut(s)	110, 484
AsuII	TTCGAA	1 cut(s)	21
AsuNHI	GCTAGC	1 cut(s)	625
AvaI	CYCGRG	2 cut(s)	57, 825
AvaII	GGWCC	1 cut(s)	51
BanI	GGYRCC	2 cut(s)	407, 584
BanII	GRGCYC	1 cut(s)	231
BbsI	GAAGAC	2 cut(s)	69, 426
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	4 cut(s)	414, 780, 789, 831
BccI	CCATC	3 cut(s)	162, 258, 457
BceAI	ACGGC	1 cut(s)	365
BciT130I	CCWGG	1 cut(s)	291
BcoDI	GTCTC	2 cut(s)	154, 627
BcuI	ACTAGT	1 cut(s)	551
BfaI	CTAG	2 cut(s)	552, 626
BfoI	RGCGCY	1 cut(s)	411
BisI	GCNGC	9 cut(s)	400, 403, 406, 411, 778, 794, 814, 817, 820
BlsI	GCNGC	9 cut(s)	401, 404, 407, 412, 779, 795, 815, 818, 821
BmcAI	AGTACT	1 cut(s)	556
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	1 cut(s)	51
BmeT110I	CYCGRG	2 cut(s)	57, 825
BmgBI	CACGTC	1 cut(s)	657
BmgT120I	GGNCC	1 cut(s)	51
BmiI	GGNNCC	4 cut(s)	242, 409, 471, 586
BmrFI	CCNGG	1 cut(s)	291
BmtI	GCTAGC	1 cut(s)	629
BpiI	GAAGAC	2 cut(s)	69, 426
BplI	GAGNNNNNCTC	2 cut(s)	371, 403
BpmI	CTGGAG	1 cut(s)	651
Bpu14I	TTCGAA	1 cut(s)	21
BpuEI	CTTGAG	1 cut(s)	661
BsaHI	GRCGYC	1 cut(s)	408
BsaJI	CCNNGG	1 cut(s)	414
BsaWI	WCCGGW	1 cut(s)	581
BsaXI	ACNNNNNCTCC	2 cut(s)	450, 480
Bsc4I	CCNNNNNNNGG	1 cut(s)	336
Bse1I	ACTGG	1 cut(s)	326
Bse3DI	GCAATG	2 cut(s)	207, 652
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	414
BseGI	GGATG	2 cut(s)	389, 468
BseLI	CCNNNNNNNGG	1 cut(s)	336
BseMI	GCAATG	2 cut(s)	207, 652
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	3 cut(s)	239, 376, 471
BseX3I	CGGCCG	1 cut(s)	814
BseXI	GCAGC	4 cut(s)	414, 780, 789, 831
BseYI	CCCAGC	1 cut(s)	395
Bsh1285I	CGRYCG	1 cut(s)	817
BshFI	GGCC	4 cut(s)	135, 187, 294, 816
BshNI	GGYRCC	2 cut(s)	407, 584
BsiEI	CGRYCG	1 cut(s)	817
BsiHKAI	GWGCWC	1 cut(s)	231
BsiHKCI	CYCGRG	2 cut(s)	57, 825
BsiSI	CCGG	2 cut(s)	279, 582
BslFI	GGGAC	1 cut(s)	735
BslI	CCNNNNNNNGG	1 cut(s)	336
BsmAI	GTCTC	2 cut(s)	154, 627
BsmBI	CGTCTC	1 cut(s)	627
BsmFI	GGGAC	1 cut(s)	735
BsnI	GGCC	4 cut(s)	135, 187, 294, 816
BsoBI	CYCGRG	2 cut(s)	57, 825
Bsp119I	TTCGAA	1 cut(s)	21
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	2 cut(s)	517, 676
BspACI	CCGC	6 cut(s)	54, 399, 405, 411, 813, 817
BspANI	GGCC	4 cut(s)	135, 187, 294, 816
BspHI	TCATGA	1 cut(s)	787
BspLI	GGNNCC	4 cut(s)	242, 409, 471, 586
BspOI	GCTAGC	1 cut(s)	629
BspPI	GGATC	1 cut(s)	684
BspT104I	TTCGAA	1 cut(s)	21
BspT107I	GGYRCC	2 cut(s)	407, 584
BsrDI	GCAATG	2 cut(s)	207, 652
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	414
BssMI	GATC	2 cut(s)	517, 676
BssNI	GRCGYC	1 cut(s)	408
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	2 cut(s)	98, 592
Bst6I	CTCTTC	2 cut(s)	146, 216
BstACI	GRCGYC	1 cut(s)	408
BstBI	TTCGAA	1 cut(s)	21
BstC8I	GCNNGC	2 cut(s)	627, 811
BstDEI	CTNAG	2 cut(s)	164, 335
BstF5I	GGATG	2 cut(s)	389, 468
BstH2I	RGCGCY	1 cut(s)	411
BstHHI	GCGC	1 cut(s)	410
BstKTI	GATC	2 cut(s)	520, 679
BstMAI	GTCTC	2 cut(s)	154, 627
BstMBI	GATC	2 cut(s)	517, 676
BstMCI	CGRYCG	1 cut(s)	817
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 405, 486, 819
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	289
BstV1I	GCAGC	4 cut(s)	414, 780, 789, 831
BstV2I	GAAGAC	2 cut(s)	69, 426
BstX2I	RGATCY	1 cut(s)	676
BstXI	CCANNNNNNTGG	1 cut(s)	804
BstYI	RGATCY	1 cut(s)	676
BstZI	CGGCCG	1 cut(s)	814
BsuRI	GGCC	4 cut(s)	135, 187, 294, 816
BtrI	CACGTC	1 cut(s)	657
BtsCI	GGATG	2 cut(s)	389, 468
Cac8I	GCNNGC	2 cut(s)	627, 811
CaiI	CAGNNNCTG	1 cut(s)	73
CciI	TCATGA	1 cut(s)	787
CciNI	GCGGCCGC	1 cut(s)	814
CfoI	GCGC	1 cut(s)	410
Cfr13I	GGNCC	1 cut(s)	51
Csp6I	GTAC	2 cut(s)	543, 555
CviAII	CATG	2 cut(s)	754, 788
CviQI	GTAC	2 cut(s)	543, 555
DdeI	CTNAG	2 cut(s)	164, 335
DinI	GGCGCC	1 cut(s)	409
DpnI	GATC	2 cut(s)	519, 678
DpnII	GATC	2 cut(s)	517, 676
EaeI	YGGCCR	2 cut(s)	292, 814
EagI	CGGCCG	1 cut(s)	814
Eam1104I	CTCTTC	2 cut(s)	146, 216
EarI	CTCTTC	2 cut(s)	146, 216
Ecl136II	GAGCTC	1 cut(s)	229
EclXI	CGGCCG	1 cut(s)	814
Eco147I	AGGCCT	2 cut(s)	135, 187
Eco24I	GRGCYC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	51
Eco52I	CGGCCG	1 cut(s)	814
Eco53kI	GAGCTC	1 cut(s)	229
Eco88I	CYCGRG	2 cut(s)	57, 825
EcoICRI	GAGCTC	1 cut(s)	229
EcoRI	GAATTC	1 cut(s)	325
EcoRII	CCWGG	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	231
EgeI	GGCGCC	1 cut(s)	409
EheI	GGCGCC	1 cut(s)	409
Esp3I	CGTCTC	1 cut(s)	627
FaeI	CATG	2 cut(s)	757, 791
FaiI	YATR	5 cut(s)	620, 671, 701, 755, 789
FaqI	GGGAC	1 cut(s)	735
FatI	CATG	2 cut(s)	753, 787
Fnu4HI	GCNGC	9 cut(s)	400, 403, 406, 411, 778, 794, 814, 817, 820
FokI	GGATG	2 cut(s)	376, 475
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	9 cut(s)	400, 403, 406, 411, 778, 794, 814, 817, 820
FspBI	CTAG	2 cut(s)	552, 626
GlaI	GCGC	1 cut(s)	409
GluI	GCNGC	9 cut(s)	400, 403, 406, 411, 778, 794, 814, 817, 820
GsaI	CCCAGC	1 cut(s)	399
GsuI	CTGGAG	1 cut(s)	651
HaeII	RGCGCY	1 cut(s)	411
HaeIII	GGCC	4 cut(s)	135, 187, 294, 816
HapII	CCGG	2 cut(s)	279, 582
HhaI	GCGC	1 cut(s)	410
Hin1I	GRCGYC	1 cut(s)	408
Hin1II	CATG	2 cut(s)	757, 791
Hin6I	GCGC	1 cut(s)	408
HinP1I	GCGC	1 cut(s)	408
HinfI	GANTC	3 cut(s)	70, 740, 748
HpaII	CCGG	2 cut(s)	279, 582
HphI	GGTGA	2 cut(s)	110, 484
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	3 cut(s)	75, 706, 745
Hpy188III	TCNNGA	3 cut(s)	536, 788, 840
Hpy8I	GTNNAC	1 cut(s)	51
HpyAV	CCTTC	3 cut(s)	95, 680, 751
HpyCH4III	ACNGT	2 cut(s)	98, 592
HpyCH4IV	ACGT	2 cut(s)	84, 656
HpyCH4V	TGCA	2 cut(s)	212, 777
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 405, 486, 819
HpyF3I	CTNAG	2 cut(s)	164, 335
HpySE526I	ACGT	2 cut(s)	84, 656
Hsp92I	GRCGYC	1 cut(s)	408
Hsp92II	CATG	2 cut(s)	757, 791
HspAI	GCGC	1 cut(s)	408
KasI	GGCGCC	1 cut(s)	407
Kzo9I	GATC	2 cut(s)	517, 676
LmnI	GCTCC	4 cut(s)	44, 226, 246, 485
Lsp1109I	GCAGC	4 cut(s)	414, 780, 789, 831
MaeI	CTAG	2 cut(s)	552, 626
MaeII	ACGT	2 cut(s)	84, 656
MaeIII	GTNAC	1 cut(s)	652
MalI	GATC	2 cut(s)	519, 678
MboI	GATC	2 cut(s)	517, 676
MboII	GAAGA	8 cut(s)	49, 74, 163, 233, 294, 431, 527, 828
MflI	RGATCY	1 cut(s)	676
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	5 cut(s)	117, 175, 325, 707, 802
Mly113I	GGCGCC	1 cut(s)	408
MlyI	GAGTC	1 cut(s)	757
MmeI	TCCRAC	2 cut(s)	433, 748
MroXI	GAANNNNTTC	2 cut(s)	118, 665
MseI	TTAA	5 cut(s)	195, 312, 365, 375, 507
MslI	CAYNNNNRTG	1 cut(s)	366
MspA1I	CMGCKG	2 cut(s)	399, 405
MspI	CCGG	2 cut(s)	279, 582
MspR9I	CCNGG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	4 cut(s)	53, 405, 486, 819
NarI	GGCGCC	1 cut(s)	408
NdeII	GATC	2 cut(s)	517, 676
NheI	GCTAGC	1 cut(s)	625
NlaIII	CATG	2 cut(s)	757, 791
NlaIV	GGNNCC	4 cut(s)	242, 409, 471, 586
NmeAIII	GCCGAG	1 cut(s)	439
NmuCI	GTSAC	1 cut(s)	652
NotI	GCGGCCGC	1 cut(s)	814
NspV	TTCGAA	1 cut(s)	21
PagI	TCATGA	1 cut(s)	787
PceI	AGGCCT	2 cut(s)	135, 187
PdmI	GAANNNNTTC	2 cut(s)	118, 665
PfeI	GAWTC	2 cut(s)	70, 740
PflFI	GACNNNGTC	1 cut(s)	83
PkrI	GCNGC	9 cut(s)	401, 404, 407, 412, 779, 795, 815, 818, 821
PleI	GAGTC	1 cut(s)	756
PluTI	GGCGCC	1 cut(s)	411
PpsI	GAGTC	1 cut(s)	756
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	289
PspFI	CCCAGC	1 cut(s)	395
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	4 cut(s)	242, 409, 471, 586
PspPI	GGNCC	1 cut(s)	51
PstNI	CAGNNNCTG	1 cut(s)	73
PsuI	RGATCY	1 cut(s)	676
PsyI	GACNNNGTC	1 cut(s)	83
RsaI	GTAC	2 cut(s)	544, 556
RsaNI	GTAC	2 cut(s)	543, 555
RseI	CAYNNNNRTG	1 cut(s)	366
SacI	GAGCTC	1 cut(s)	231
SaqAI	TTAA	5 cut(s)	195, 312, 365, 375, 507
SatI	GCNGC	9 cut(s)	400, 403, 406, 411, 778, 794, 814, 817, 820
Sau3AI	GATC	2 cut(s)	517, 676
Sau96I	GGNCC	1 cut(s)	51
ScaI	AGTACT	1 cut(s)	556
SchI	GAGTC	1 cut(s)	757
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	1 cut(s)	231
SfoI	GGCGCC	1 cut(s)	409
SfuI	TTCGAA	1 cut(s)	21
SinI	GGWCC	1 cut(s)	51
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	1 cut(s)	640
SmoI	CTYRAG	1 cut(s)	640
SpeI	ACTAGT	1 cut(s)	551
Sse9I	AATT	5 cut(s)	117, 175, 325, 707, 802
SseBI	AGGCCT	2 cut(s)	135, 187
SsiI	CCGC	6 cut(s)	54, 399, 405, 411, 813, 817
SspDI	GGCGCC	1 cut(s)	407
SspI	AATATT	1 cut(s)	573
SspMI	CTAG	2 cut(s)	552, 626
SstI	GAGCTC	1 cut(s)	231
StuI	AGGCCT	2 cut(s)	135, 187
StyD4I	CCNGG	1 cut(s)	289
TaaI	ACNGT	2 cut(s)	98, 592
TaiI	ACGT	2 cut(s)	87, 659
TaqI	TCGA	2 cut(s)	21, 431
TasI	AATT	5 cut(s)	117, 175, 325, 707, 802
TatI	WGTACW	1 cut(s)	554
TauI	GCSGC	5 cut(s)	402, 408, 413, 816, 819
TfiI	GAWTC	2 cut(s)	70, 740
Tru1I	TTAA	5 cut(s)	195, 312, 365, 375, 507
Tru9I	TTAA	5 cut(s)	195, 312, 365, 375, 507
TseFI	GTSAC	1 cut(s)	652
TseI	GCWGC	4 cut(s)	402, 777, 793, 819
Tsp45I	GTSAC	1 cut(s)	652
TspDTI	ATGAA	5 cut(s)	50, 234, 658, 699, 770
Tth111I	GACNNNGTC	1 cut(s)	83
VpaK11BI	GGWCC	1 cut(s)	51
XapI	RAATTY	3 cut(s)	117, 325, 707
XmnI	GAANNNNTTC	2 cut(s)	118, 665
XspI	CTAG	2 cut(s)	552, 626
ZrmI	AGTACT	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.