Rh5AG143000
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0004526
Physical Location & Seq
Forward (+)
14999163 .. 15001087
1925 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG143000.1

Sequence Viewer

Length: 798 bp
ATGGGAAGATACTCTGGTTTCGAAAAGGGGGGATTGAAGAAAGGTACGTGGTCTGCTTGCGAAGACCAGGTTCTCAAGGATTACGTCAAAAAGCACGGTCCAGGCAAATGGGGAAAATTATCAAGGGAGACCGGTTTGAAGAGATGCGGGAAGAGTGTGAGACTGAGGTGGTTGAATTACCTGAGGCCCGGTATCAAGAGAGGCAAGATTACAGAAGATGAAAAAGACCTTATCATCAGGATGCACAAACTCTTAGGCAACAGGTGGTCATTGATAGCCGGAAGGATCCCGGGCCGAACTGACAATGAAATAAAGAACTACTGGAATTCCATTCTAAAGAAGAACGTGGGAGAAGAAAAAGAGAGAGAATCAGAAGTGTCGAGAAACGAGATAATCAAGGAGAACTTGCCATCCCTCGCTGAGGACGATGGTCATCCACATTTGACCAATTGCGATGAAGTTCTTGGAGGAGGAGGAGGATTGGTGTGTTTTGCCAGTGATGTTAATGTAGAAGAAGATCACCGGCGTCGTTGTCTTGGCCGTACTAGTACCGATACTACTACACTGAGTCCCGGAGTGGGAGTCGAAATCGGAGGCGGGGCAAACAAAGATATTCAACCAACAGGGGATGATCTCAATTATAACGCTATAACCTGGAAAGATTCGATAATGGATCTGAATGGAGGCCAACTCGACATATCTGAATTCCTCCAAAGTGACTTTTCGACGTTTTGGGATTCAGATGGGATCATGAATTTTGAAATCGGAGGTTGCAGCACCATGAATTATGATTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

265

Amino Acids

29.59

Weight (kDa)

6.03

Isoelectric Point (pI)

44.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 2e-13 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 74 2.8e-09 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 1.1e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 116 1e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 642
AciI CCGC 2 cut(s) 147, 597
AclWI GGATC 4 cut(s) 280, 293, 681, 755
AcoI YGGCCR 1 cut(s) 538
AcsI RAATTY 3 cut(s) 325, 704, 754
AcyI GRCGYC 1 cut(s) 526
AfaI GTAC 3 cut(s) 46, 544, 550
AfiI CCNNNNNNNGG 2 cut(s) 421, 578
AgeI ACCGGT 1 cut(s) 131
AgsI TTSAA 5 cut(s) 37, 139, 175, 617, 761
AhlI ACTAGT 1 cut(s) 545
AjnI CCWGG 3 cut(s) 66, 100, 653
AloI GAACNNNNNNTCC 2 cut(s) 395, 427
Alw26I GTCTC 2 cut(s) 122, 154
AlwI GGATC 4 cut(s) 280, 293, 681, 755
Ama87I CYCGRG 1 cut(s) 289
AoxI GGCC 4 cut(s) 185, 292, 538, 685
ApeKI GCWGC 1 cut(s) 774
ApoI RAATTY 3 cut(s) 325, 704, 754
AsiGI ACCGGT 1 cut(s) 131
AspS9I GGNCC 3 cut(s) 98, 186, 292
AsuC2I CCSGG 4 cut(s) 189, 290, 291, 573
AsuHPI GGTGA 1 cut(s) 512
AsuII TTCGAA 1 cut(s) 21
AvaI CYCGRG 1 cut(s) 289
AvaII GGWCC 1 cut(s) 98
AxyI CCTNAGG 1 cut(s) 182
BaeI ACNNNNGTAYC 1 cut(s) 34
BamHI GGATCC 1 cut(s) 285
BbsI GAAGAC 1 cut(s) 69
BbvCI CCTCAGC 1 cut(s) 420
BbvI GCAGC 1 cut(s) 786
BccI CCATC 3 cut(s) 418, 422, 737
BceAI ACGGC 1 cut(s) 525
BciT130I CCWGG 3 cut(s) 68, 102, 655
BcnI CCSGG 4 cut(s) 189, 290, 291, 573
BcoDI GTCTC 2 cut(s) 122, 154
BcuI ACTAGT 1 cut(s) 545
BfaI CTAG 1 cut(s) 546
BisI GCNGC 1 cut(s) 775
BlsI GCNGC 1 cut(s) 776
Bme1390I CCNGG 7 cut(s) 68, 102, 189, 290, 291, 573, 655
Bme18I GGWCC 1 cut(s) 98
BmeT110I CYCGRG 1 cut(s) 289
BmgT120I GGNCC 3 cut(s) 98, 186, 292
BmiI GGNNCC 1 cut(s) 287
BmrFI CCNGG 7 cut(s) 68, 102, 189, 290, 291, 573, 655
BmsI GCATC 2 cut(s) 134, 231
BoxI GACNNNNGTC 1 cut(s) 429
BpiI GAAGAC 1 cut(s) 69
BplI GAGNNNNNCTC 2 cut(s) 675, 707
Bpu10I CCTNAGC 1 cut(s) 420
Bpu14I TTCGAA 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 59
BpuMI CCSGG 4 cut(s) 189, 290, 291, 573
BsaAI YACGTR 1 cut(s) 48
BsaBI GATNNNNATC 1 cut(s) 432
BsaHI GRCGYC 1 cut(s) 526
BsaI GGTCTC 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 289
BsaWI WCCGGW 1 cut(s) 131
BsaXI ACNNNNNCTCC 4 cut(s) 468, 498, 567, 597
Bsc4I CCNNNNNNNGG 2 cut(s) 421, 578
Bse118I RCCGGY 2 cut(s) 131, 522
Bse1I ACTGG 2 cut(s) 326, 495
Bse21I CCTNAGG 1 cut(s) 182
Bse8I GATNNNNATC 1 cut(s) 432
BseBI CCWGG 3 cut(s) 68, 102, 655
BseDI CCNNGG 1 cut(s) 289
BseGI GGATG 4 cut(s) 246, 410, 433, 634
BseJI GATNNNNATC 1 cut(s) 432
BseLI CCNNNNNNNGG 2 cut(s) 421, 578
BseMII CTCAG 4 cut(s) 155, 173, 411, 557
BseNI ACTGG 2 cut(s) 326, 495
BseRI GAGGAG 3 cut(s) 483, 486, 489
BseXI GCAGC 1 cut(s) 786
BshFI GGCC 4 cut(s) 187, 294, 540, 687
BshTI ACCGGT 1 cut(s) 131
BsiHKCI CYCGRG 1 cut(s) 289
BsiSI CCGG 6 cut(s) 132, 189, 279, 290, 523, 573
BslFI GGGAC 1 cut(s) 555
BslI CCNNNNNNNGG 2 cut(s) 421, 578
BsmAI GTCTC 2 cut(s) 122, 154
BsmFI GGGAC 1 cut(s) 555
BsnI GGCC 4 cut(s) 187, 294, 540, 687
Bso31I GGTCTC 1 cut(s) 122
BsoBI CYCGRG 1 cut(s) 289
Bsp119I TTCGAA 1 cut(s) 21
Bsp143I GATC 5 cut(s) 285, 517, 631, 673, 747
BspACI CCGC 2 cut(s) 147, 597
BspANI GGCC 4 cut(s) 187, 294, 540, 687
BspCNI CTCAG 4 cut(s) 156, 174, 412, 558
BspHI TCATGA 1 cut(s) 750
BspLI GGNNCC 1 cut(s) 287
BspPI GGATC 4 cut(s) 280, 293, 681, 755
BspT104I TTCGAA 1 cut(s) 21
BspTNI GGTCTC 1 cut(s) 122
BsrFI RCCGGY 2 cut(s) 131, 522
BsrI ACTGG 2 cut(s) 326, 495
BssAI RCCGGY 2 cut(s) 131, 522
BssECI CCNNGG 1 cut(s) 289
BssMI GATC 5 cut(s) 285, 517, 631, 673, 747
BssNI GRCGYC 1 cut(s) 526
Bst2UI CCWGG 3 cut(s) 68, 102, 655
Bst4CI ACNGT 1 cut(s) 98
Bst6I CTCTTC 2 cut(s) 134, 146
BstACI GRCGYC 1 cut(s) 526
BstBAI YACGTR 1 cut(s) 48
BstBI TTCGAA 1 cut(s) 21
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 5 cut(s) 164, 182, 253, 420, 566
BstENI CCTNNNNNAGG 1 cut(s) 419
BstF5I GGATG 4 cut(s) 246, 410, 433, 634
BstKTI GATC 5 cut(s) 288, 520, 634, 676, 750
BstMAI GTCTC 2 cut(s) 122, 154
BstMBI GATC 5 cut(s) 285, 517, 631, 673, 747
BstNI CCWGG 3 cut(s) 68, 102, 655
BstPAI GACNNNNGTC 1 cut(s) 429
BstSCI CCNGG 7 cut(s) 66, 100, 187, 288, 289, 571, 653
BstV1I GCAGC 1 cut(s) 786
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 2 cut(s) 285, 673
BstXI CCANNNNNNTGG 1 cut(s) 108
BstYI RGATCY 2 cut(s) 285, 673
Bsu36I CCTNAGG 1 cut(s) 182
BsuRI GGCC 4 cut(s) 187, 294, 540, 687
BtgZI GCGATG 1 cut(s) 468
BtsCI GGATG 4 cut(s) 246, 410, 433, 634
BtsIMutI CAGTG 2 cut(s) 502, 563
Cac8I GCNNGC 1 cut(s) 58
CciI TCATGA 1 cut(s) 750
Cfr10I RCCGGY 2 cut(s) 131, 522
Cfr13I GGNCC 3 cut(s) 98, 186, 292
Cfr9I CCCGGG 1 cut(s) 289
CseI GACGC 1 cut(s) 515
CsiI ACCWGGT 1 cut(s) 66
Csp6I GTAC 3 cut(s) 45, 543, 549
CspAI ACCGGT 1 cut(s) 131
CviAII CATG 2 cut(s) 751, 781
CviJI RGCY 5 cut(s) 187, 278, 294, 540, 687
CviKI_1 RGCY 5 cut(s) 187, 278, 294, 540, 687
CviQI GTAC 3 cut(s) 45, 543, 549
DdeI CTNAG 5 cut(s) 164, 182, 253, 420, 566
DpnI GATC 5 cut(s) 287, 519, 633, 675, 749
DpnII GATC 5 cut(s) 285, 517, 631, 673, 747
EaeI YGGCCR 1 cut(s) 538
Eam1104I CTCTTC 2 cut(s) 134, 146
EarI CTCTTC 2 cut(s) 134, 146
Eco31I GGTCTC 1 cut(s) 122
Eco47I GGWCC 1 cut(s) 98
Eco81I CCTNAGG 1 cut(s) 182
Eco88I CYCGRG 1 cut(s) 289
EcoNI CCTNNNNNAGG 1 cut(s) 419
EcoRI GAATTC 2 cut(s) 325, 704
EcoRII CCWGG 3 cut(s) 66, 100, 653
FaeI CATG 2 cut(s) 754, 784
FaiI YATR 7 cut(s) 642, 650, 698, 752, 782, 789, 796
FalI AAGNNNNNCTT 2 cut(s) 389, 421
FaqI GGGAC 1 cut(s) 555
FatI CATG 2 cut(s) 750, 780
FauI CCCGC 2 cut(s) 140, 590
Fnu4HI GCNGC 1 cut(s) 775
FokI GGATG 4 cut(s) 253, 397, 420, 641
Fsp4HI GCNGC 1 cut(s) 775
FspBI CTAG 1 cut(s) 546
GluI GCNGC 1 cut(s) 775
HaeIII GGCC 4 cut(s) 187, 294, 540, 687
HapII CCGG 6 cut(s) 132, 189, 279, 290, 523, 573
HgaI GACGC 1 cut(s) 515
Hin1I GRCGYC 1 cut(s) 526
Hin1II CATG 2 cut(s) 754, 784
HinfI GANTC 5 cut(s) 368, 568, 582, 662, 737
HpaII CCGG 6 cut(s) 132, 189, 279, 290, 523, 573
HphI GGTGA 1 cut(s) 512
Hpy188I TCNGA 6 cut(s) 373, 593, 678, 703, 742, 767
Hpy188III TCNNGA 4 cut(s) 196, 238, 381, 751
Hpy99I CGWCG 2 cut(s) 531, 730
HpyAV CCTTC 1 cut(s) 276
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4IV ACGT 4 cut(s) 47, 84, 345, 728
HpyCH4V TGCA 2 cut(s) 244, 774
HpyF3I CTNAG 5 cut(s) 164, 182, 253, 420, 566
HpySE526I ACGT 4 cut(s) 47, 84, 345, 728
Hsp92I GRCGYC 1 cut(s) 526
Hsp92II CATG 2 cut(s) 754, 784
Kzo9I GATC 5 cut(s) 285, 517, 631, 673, 747
Lsp1109I GCAGC 1 cut(s) 786
LweI GCATC 2 cut(s) 134, 231
MabI ACCWGGT 1 cut(s) 66
MaeI CTAG 1 cut(s) 546
MaeII ACGT 4 cut(s) 47, 84, 345, 728
MaeIII GTNAC 1 cut(s) 716
MalI GATC 5 cut(s) 287, 519, 633, 675, 749
MboI GATC 5 cut(s) 285, 517, 631, 673, 747
MfeI CAATTG 1 cut(s) 448
MflI RGATCY 2 cut(s) 285, 673
MluCI AATT 8 cut(s) 116, 175, 325, 448, 637, 704, 754, 784
MlyI GAGTC 2 cut(s) 577, 591
MseI TTAA 1 cut(s) 504
MslI CAYNNNNRTG 1 cut(s) 239
MspI CCGG 6 cut(s) 132, 189, 279, 290, 523, 573
MspR9I CCNGG 7 cut(s) 68, 102, 189, 290, 291, 573, 655
MunI CAATTG 1 cut(s) 448
MvaI CCWGG 3 cut(s) 68, 102, 655
NciI CCSGG 4 cut(s) 189, 290, 291, 573
NdeII GATC 5 cut(s) 285, 517, 631, 673, 747
NlaIII CATG 2 cut(s) 754, 784
NlaIV GGNNCC 1 cut(s) 287
NmuCI GTSAC 1 cut(s) 716
NspV TTCGAA 1 cut(s) 21
PagI TCATGA 1 cut(s) 750
PcsI WCGNNNNNNNCGW 1 cut(s) 423
PfeI GAWTC 3 cut(s) 368, 662, 737
PfoI TCCNGGA 1 cut(s) 571
PinAI ACCGGT 1 cut(s) 131
PkrI GCNGC 1 cut(s) 776
PleI GAGTC 2 cut(s) 576, 590
PpsI GAGTC 2 cut(s) 576, 590
Ppu21I YACGTR 1 cut(s) 48
PshAI GACNNNNGTC 1 cut(s) 429
PsiI TTATAA 1 cut(s) 642
Psp6I CCWGG 3 cut(s) 66, 100, 653
PspGI CCWGG 3 cut(s) 66, 100, 653
PspN4I GGNNCC 1 cut(s) 287
PspPI GGNCC 3 cut(s) 98, 186, 292
PsuI RGATCY 2 cut(s) 285, 673
RsaI GTAC 3 cut(s) 46, 544, 550
RsaNI GTAC 3 cut(s) 45, 543, 549
RseI CAYNNNNRTG 1 cut(s) 239
SaqAI TTAA 1 cut(s) 504
SatI GCNGC 1 cut(s) 775
Sau3AI GATC 5 cut(s) 285, 517, 631, 673, 747
Sau96I GGNCC 3 cut(s) 98, 186, 292
SchI GAGTC 2 cut(s) 577, 591
ScrFI CCNGG 7 cut(s) 68, 102, 189, 290, 291, 573, 655
SexAI ACCWGGT 1 cut(s) 66
SfaNI GCATC 2 cut(s) 134, 231
SfuI TTCGAA 1 cut(s) 21
SgrAI CRCCGGYG 1 cut(s) 522
SinI GGWCC 1 cut(s) 98
SmaI CCCGGG 1 cut(s) 291
SmiMI CAYNNNNRTG 1 cut(s) 239
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
SpeI ACTAGT 1 cut(s) 545
Sse9I AATT 8 cut(s) 116, 175, 325, 448, 637, 704, 754, 784
SsiI CCGC 2 cut(s) 147, 597
SspMI CTAG 1 cut(s) 546
StyD4I CCNGG 7 cut(s) 66, 100, 187, 288, 289, 571, 653
TaaI ACNGT 1 cut(s) 98
TaiI ACGT 4 cut(s) 50, 87, 348, 731
TaqI TCGA 6 cut(s) 21, 380, 585, 665, 693, 725
TasI AATT 8 cut(s) 116, 175, 325, 448, 637, 704, 754, 784
TfiI GAWTC 3 cut(s) 368, 662, 737
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TscAI CASTG 2 cut(s) 502, 570
TseFI GTSAC 1 cut(s) 716
TseI GCWGC 1 cut(s) 774
Tsp45I GTSAC 1 cut(s) 716
TspDTI ATGAA 5 cut(s) 234, 321, 471, 767, 797
TspMI CCCGGG 1 cut(s) 289
TspRI CASTG 2 cut(s) 502, 570
VpaK11BI GGWCC 1 cut(s) 98
XagI CCTNNNNNAGG 1 cut(s) 419
XapI RAATTY 3 cut(s) 325, 704, 754
XmaI CCCGGG 1 cut(s) 289
XspI CTAG 1 cut(s) 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.