Rmu_co8139852.1_g000001
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8139852.1
OG0004526
Physical Location & Seq
Forward (+)
1 .. 596
596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8139852.1_g000001.1.cds

Sequence Viewer

Length: 535 bp
gtggtcattgatagccggaaggattccgggccgaactgacaatgaaataaagaactactggaattccattctaaagaagaacgtgggagaagaaaaagagagagaatcagaagtgtcgagaaacgagatattcaagaagaacttgccatccctcgctgaggacgatggtcatccacatttgaccaaatgcgatgaagttcttggaggaggaggaggattggtgtgttttgccagtgatgttaatgtagaagaagatcaccggcgtcgttgtcttggccgtactagtaccgatactactacactgagtcccggagtgggagtcgaaatcggaggcggggcaaacaaagatattcaaccaacaggggatgatctcaattataacgctatagcctggaaagattcgataatggatctgaatggaggccaactcgacatatctgaattcctccaaagtgacttttcgacgttttgggattcagataggctcatgaattttgaaatcggaggttgcagcaccatgaattatgatttatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

177

Amino Acids

19.56

Weight (kDa)

4.57

Isoelectric Point (pI)

48.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 379
AciI CCGC 1 cut(s) 334
AclWI GGATC 1 cut(s) 418
AcoI YGGCCR 1 cut(s) 275
AcsI RAATTY 3 cut(s) 62, 441, 491
AcyI GRCGYC 1 cut(s) 263
AfaI GTAC 2 cut(s) 281, 287
AfiI CCNNNNNNNGG 2 cut(s) 158, 315
AgsI TTSAA 3 cut(s) 134, 354, 498
AhlI ACTAGT 1 cut(s) 282
AjnI CCWGG 1 cut(s) 390
AloI GAACNNNNNNTCC 2 cut(s) 132, 164
AlwI GGATC 1 cut(s) 418
AoxI GGCC 3 cut(s) 29, 275, 422
ApeKI GCWGC 1 cut(s) 511
ApoI RAATTY 3 cut(s) 62, 441, 491
AspS9I GGNCC 1 cut(s) 29
AsuC2I CCSGG 2 cut(s) 28, 310
AsuHPI GGTGA 1 cut(s) 249
BbvCI CCTCAGC 1 cut(s) 157
BbvI GCAGC 1 cut(s) 523
BccI CCATC 2 cut(s) 155, 159
BceAI ACGGC 1 cut(s) 262
BciT130I CCWGG 1 cut(s) 392
BcnI CCSGG 2 cut(s) 28, 310
BcuI ACTAGT 1 cut(s) 282
BfaI CTAG 1 cut(s) 283
BfmI CTRYAG 1 cut(s) 385
BisI GCNGC 1 cut(s) 512
BlsI GCNGC 1 cut(s) 513
Bme1390I CCNGG 3 cut(s) 28, 310, 392
BmgT120I GGNCC 1 cut(s) 29
BmrFI CCNGG 3 cut(s) 28, 310, 392
BoxI GACNNNNGTC 1 cut(s) 166
BplI GAGNNNNNCTC 2 cut(s) 412, 444
Bpu10I CCTNAGC 1 cut(s) 157
BpuMI CCSGG 2 cut(s) 28, 310
BsaBI GATNNNNATC 1 cut(s) 169
BsaHI GRCGYC 1 cut(s) 263
BsaXI ACNNNNNCTCC 4 cut(s) 205, 235, 304, 334
Bsc4I CCNNNNNNNGG 2 cut(s) 158, 315
Bse118I RCCGGY 1 cut(s) 259
Bse1I ACTGG 2 cut(s) 63, 232
Bse8I GATNNNNATC 1 cut(s) 169
BseBI CCWGG 1 cut(s) 392
BseGI GGATG 3 cut(s) 147, 170, 371
BseJI GATNNNNATC 1 cut(s) 169
BseLI CCNNNNNNNGG 2 cut(s) 158, 315
BseMII CTCAG 2 cut(s) 148, 294
BseNI ACTGG 2 cut(s) 63, 232
BseRI GAGGAG 3 cut(s) 220, 223, 226
BseXI GCAGC 1 cut(s) 523
BshFI GGCC 3 cut(s) 31, 277, 424
BsiSI CCGG 4 cut(s) 16, 27, 260, 310
BslFI GGGAC 1 cut(s) 292
BslI CCNNNNNNNGG 2 cut(s) 158, 315
BsmFI GGGAC 1 cut(s) 292
BsnI GGCC 3 cut(s) 31, 277, 424
Bsp143I GATC 3 cut(s) 254, 368, 410
BspACI CCGC 1 cut(s) 334
BspANI GGCC 3 cut(s) 31, 277, 424
BspCNI CTCAG 2 cut(s) 149, 295
BspHI TCATGA 1 cut(s) 487
BspPI GGATC 1 cut(s) 418
BsrFI RCCGGY 1 cut(s) 259
BsrI ACTGG 2 cut(s) 63, 232
BssAI RCCGGY 1 cut(s) 259
BssMI GATC 3 cut(s) 254, 368, 410
BssNI GRCGYC 1 cut(s) 263
Bst2UI CCWGG 1 cut(s) 392
BstACI GRCGYC 1 cut(s) 263
BstDEI CTNAG 2 cut(s) 157, 303
BstENI CCTNNNNNAGG 1 cut(s) 156
BstF5I GGATG 3 cut(s) 147, 170, 371
BstKTI GATC 3 cut(s) 257, 371, 413
BstMBI GATC 3 cut(s) 254, 368, 410
BstNI CCWGG 1 cut(s) 392
BstPAI GACNNNNGTC 1 cut(s) 166
BstSCI CCNGG 3 cut(s) 26, 308, 390
BstSFI CTRYAG 1 cut(s) 385
BstV1I GCAGC 1 cut(s) 523
BstX2I RGATCY 1 cut(s) 410
BstYI RGATCY 1 cut(s) 410
BsuRI GGCC 3 cut(s) 31, 277, 424
BtgZI GCGATG 1 cut(s) 205
BtsCI GGATG 3 cut(s) 147, 170, 371
BtsIMutI CAGTG 2 cut(s) 239, 300
CciI TCATGA 1 cut(s) 487
Cfr10I RCCGGY 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 29
CseI GACGC 1 cut(s) 252
Csp6I GTAC 2 cut(s) 280, 286
CviAII CATG 2 cut(s) 488, 518
CviJI RGCY 6 cut(s) 15, 31, 277, 390, 424, 485
CviKI_1 RGCY 6 cut(s) 15, 31, 277, 390, 424, 485
CviQI GTAC 2 cut(s) 280, 286
DdeI CTNAG 2 cut(s) 157, 303
DpnI GATC 3 cut(s) 256, 370, 412
DpnII GATC 3 cut(s) 254, 368, 410
EaeI YGGCCR 1 cut(s) 275
EcoNI CCTNNNNNAGG 1 cut(s) 156
EcoRI GAATTC 2 cut(s) 62, 441
EcoRII CCWGG 1 cut(s) 390
FaeI CATG 2 cut(s) 491, 521
FaiI YATR 7 cut(s) 379, 387, 435, 489, 519, 526, 533
FalI AAGNNNNNCTT 2 cut(s) 126, 158
FaqI GGGAC 1 cut(s) 292
FatI CATG 2 cut(s) 487, 517
FauI CCCGC 1 cut(s) 327
Fnu4HI GCNGC 1 cut(s) 512
FokI GGATG 3 cut(s) 134, 157, 378
Fsp4HI GCNGC 1 cut(s) 512
FspBI CTAG 1 cut(s) 283
GluI GCNGC 1 cut(s) 512
HaeIII GGCC 3 cut(s) 31, 277, 424
HapII CCGG 4 cut(s) 16, 27, 260, 310
HgaI GACGC 1 cut(s) 252
Hin1I GRCGYC 1 cut(s) 263
Hin1II CATG 2 cut(s) 491, 521
HinfI GANTC 6 cut(s) 23, 105, 305, 319, 399, 474
HpaII CCGG 4 cut(s) 16, 27, 260, 310
HphI GGTGA 1 cut(s) 249
Hpy188I TCNGA 6 cut(s) 110, 330, 415, 440, 479, 504
Hpy188III TCNNGA 3 cut(s) 118, 134, 488
Hpy99I CGWCG 2 cut(s) 268, 467
HpyAV CCTTC 1 cut(s) 13
HpyCH4IV ACGT 2 cut(s) 82, 465
HpyCH4V TGCA 1 cut(s) 511
HpyF3I CTNAG 2 cut(s) 157, 303
HpySE526I ACGT 2 cut(s) 82, 465
Hsp92I GRCGYC 1 cut(s) 263
Hsp92II CATG 2 cut(s) 491, 521
Kzo9I GATC 3 cut(s) 254, 368, 410
LpnPI CCDG 9 cut(s) 29, 40, 44, 245, 273, 323, 346, 377, 404
Lsp1109I GCAGC 1 cut(s) 523
MaeI CTAG 1 cut(s) 283
MaeII ACGT 2 cut(s) 82, 465
MaeIII GTNAC 1 cut(s) 453
MalI GATC 3 cut(s) 256, 370, 412
MboI GATC 3 cut(s) 254, 368, 410
MboII GAAGA 5 cut(s) 89, 102, 149, 261, 264
MflI RGATCY 1 cut(s) 410
MluCI AATT 5 cut(s) 62, 374, 441, 491, 521
MlyI GAGTC 2 cut(s) 314, 328
MseI TTAA 1 cut(s) 241
MspI CCGG 4 cut(s) 16, 27, 260, 310
MspR9I CCNGG 3 cut(s) 28, 310, 392
MvaI CCWGG 1 cut(s) 392
NciI CCSGG 2 cut(s) 28, 310
NdeII GATC 3 cut(s) 254, 368, 410
NlaIII CATG 2 cut(s) 491, 521
NmuCI GTSAC 1 cut(s) 453
PagI TCATGA 1 cut(s) 487
PcsI WCGNNNNNNNCGW 1 cut(s) 160
PfeI GAWTC 4 cut(s) 23, 105, 399, 474
PfoI TCCNGGA 1 cut(s) 308
PkrI GCNGC 1 cut(s) 513
PleI GAGTC 2 cut(s) 313, 327
PpsI GAGTC 2 cut(s) 313, 327
PshAI GACNNNNGTC 1 cut(s) 166
PsiI TTATAA 1 cut(s) 379
Psp6I CCWGG 1 cut(s) 390
PspGI CCWGG 1 cut(s) 390
PspPI GGNCC 1 cut(s) 29
PsuI RGATCY 1 cut(s) 410
RsaI GTAC 2 cut(s) 281, 287
RsaNI GTAC 2 cut(s) 280, 286
SaqAI TTAA 1 cut(s) 241
SatI GCNGC 1 cut(s) 512
Sau3AI GATC 3 cut(s) 254, 368, 410
Sau96I GGNCC 1 cut(s) 29
SchI GAGTC 2 cut(s) 314, 328
ScrFI CCNGG 3 cut(s) 28, 310, 392
SetI ASST 3 cut(s) 85, 468, 509
SfcI CTRYAG 1 cut(s) 385
SgrAI CRCCGGYG 1 cut(s) 259
SpeI ACTAGT 1 cut(s) 282
Sse9I AATT 5 cut(s) 62, 374, 441, 491, 521
SsiI CCGC 1 cut(s) 334
SspMI CTAG 1 cut(s) 283
StyD4I CCNGG 3 cut(s) 26, 308, 390
TaiI ACGT 2 cut(s) 85, 468
TaqI TCGA 5 cut(s) 117, 322, 402, 430, 462
TasI AATT 5 cut(s) 62, 374, 441, 491, 521
TfiI GAWTC 4 cut(s) 23, 105, 399, 474
Tru1I TTAA 1 cut(s) 241
Tru9I TTAA 1 cut(s) 241
TscAI CASTG 2 cut(s) 239, 307
TseFI GTSAC 1 cut(s) 453
TseI GCWGC 1 cut(s) 511
Tsp45I GTSAC 1 cut(s) 453
TspDTI ATGAA 4 cut(s) 58, 208, 504, 534
TspRI CASTG 2 cut(s) 239, 307
XagI CCTNNNNNAGG 1 cut(s) 156
XapI RAATTY 3 cut(s) 62, 441, 491
XspI CTAG 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.