Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004526

Physical Location & Seq

Genomic Coordinates Reverse (-)

35955257 .. 35956396

Gene Structure 1140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0326100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCATGGCCTCCACGAAGTTGGAAGTGCTCTCCCCCACTTGCAGTTATCATGCTGCTGATCATTTTGTCCATTTCAGTTCCAGGGAATTCAGCCGCAGTCACTGTCACTTCCGATGAAAAGAACCAACAACAAACAGTGACAGTTTCGTCCACTCAGAAAGAAGAAACCGACACTTCTACTACTACTGGAGAAATCAAGTGTGGAACATGCCCTTGTGTAAACCCTTGTCAACAGCAGCAGCAGCAGATTCCACCACCTCCCCCACCGCCTCCGCCACCAAAGACCACTAGTTGCAGCCCAGTTTTACCTGCAGCCCCAGTATTATTGGCGCCGCCGCCTCCAAGGTTCATTTATGTGACGGGTATTCCAGGTGATTTGTACAAAACAGATACTTATGGATCGTCCTATTCCTATGATTTTTACTCGGCCGCTGCTCCACCGCCATATCCAAATGTGATCATCACGTTGCCACCTGCCTTGCTCCTCGTCTTGCTCATGGCTTTTGGGAGGATGCTACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

174

Amino Acids

18.6

Weight (kDa)

6.12

Isoelectric Point (pI)

57.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004526)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31070 FvH4_2g31070 FvH4_4g02400
rosa_chinensis	RchiOBHm_Chr4g0389841 RchiOBHm_Chr5g0019651 RchiOBHm_Chr6g0311731
rosa_laevigata	RLG00000009947 RLG00000010379
rosa_multiflora	Rmu_co8139852.1_g000001 Rmu_sc0002702.1_g000022 Rmu_sc0002888.1_g000030 Rmu_sc0030932.1_g000007
rosa_roxburghii	Rroxscaffold_1G00058440 Rroxscaffold_5G00335890 Rroxscaffold_5G00335920 Rroxscaffold_7G00157360
rosa_rugosa	Rorug03G0325700 Rorug03G0326000 Rorug03G0326100 Rorug03G0326200 Rorug05G0052400
rosa_samantha	Rh4AG030400 Rh4BG023600 Rh4CG033000 Rh5AG143000 Rh5BG141600 Rh5CG153600 Rh6BG517200 Rh6DG508800
rosa_wichuraiana	Rw4G002290 Rw5G012670 Rw6G044060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	484
AasI	GACNNNNNNGTC	1 cut(s)	148
Acc36I	ACCTGC	2 cut(s)	319, 484
AccB1I	GGYRCC	1 cut(s)	331
AciI	CCGC	7 cut(s)	96, 269, 275, 335, 338, 432, 443
AclWI	GGATC	1 cut(s)	409
AcoI	YGGCCR	1 cut(s)	429
AcsI	RAATTY	1 cut(s)	88
AcyI	GRCGYC	1 cut(s)	332
AfaI	GTAC	1 cut(s)	383
AhlI	ACTAGT	1 cut(s)	290
AjnI	CCWGG	2 cut(s)	82, 370
Alw21I	GWGCWC	1 cut(s)	32
AlwI	GGATC	1 cut(s)	409
AlwNI	CAGNNNCTG	1 cut(s)	104
AoxI	GGCC	2 cut(s)	8, 429
ApeKI	GCWGC	7 cut(s)	55, 238, 241, 244, 297, 314, 434
ApoI	RAATTY	1 cut(s)	88
AspLEI	GCGC	1 cut(s)	334
AsuHPI	GGTGA	1 cut(s)	386
BanI	GGYRCC	1 cut(s)	331
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	7 cut(s)	42, 250, 253, 256, 309, 326, 421
BciT130I	CCWGG	2 cut(s)	84, 372
BclI	TGATCA	2 cut(s)	60, 459
BcuI	ACTAGT	1 cut(s)	290
BfaI	CTAG	1 cut(s)	291
BfmI	CTRYAG	1 cut(s)	312
BfoI	RGCGCY	1 cut(s)	335
BfuAI	ACCTGC	2 cut(s)	319, 484
Bme1390I	CCNGG	2 cut(s)	84, 372
BmiI	GGNNCC	1 cut(s)	333
BmrFI	CCNGG	2 cut(s)	84, 372
BmrI	ACTGGG	2 cut(s)	296, 314
BmsI	GCATC	1 cut(s)	504
BmuI	ACTGGG	2 cut(s)	296, 314
BpmI	CTGGAG	1 cut(s)	210
BsaHI	GRCGYC	1 cut(s)	332
BsaJI	CCNNGG	2 cut(s)	83, 344
Bse1I	ACTGG	3 cut(s)	193, 302, 320
BseBI	CCWGG	2 cut(s)	84, 372
BseDI	CCNNGG	2 cut(s)	83, 344
BseGI	GGATG	1 cut(s)	519
BseMII	CTCAG	1 cut(s)	170
BseNI	ACTGG	3 cut(s)	193, 302, 320
BseRI	GAGGAG	1 cut(s)	476
BseX3I	CGGCCG	1 cut(s)	429
BseXI	GCAGC	7 cut(s)	42, 250, 253, 256, 309, 326, 421
Bsh1285I	CGRYCG	1 cut(s)	432
BshFI	GGCC	2 cut(s)	10, 431
BshNI	GGYRCC	1 cut(s)	331
BsiEI	CGRYCG	1 cut(s)	432
BsiHKAI	GWGCWC	1 cut(s)	32
BsnI	GGCC	2 cut(s)	10, 431
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp1407I	TGTACA	1 cut(s)	381
Bsp143I	GATC	3 cut(s)	60, 401, 459
BspACI	CCGC	7 cut(s)	96, 269, 275, 335, 338, 432, 443
BspANI	GGCC	2 cut(s)	10, 431
BspCNI	CTCAG	1 cut(s)	169
BspLI	GGNNCC	1 cut(s)	333
BspMAI	CTGCAG	1 cut(s)	316
BspMI	ACCTGC	2 cut(s)	319, 484
BspPI	GGATC	1 cut(s)	409
BspT107I	GGYRCC	1 cut(s)	331
BsrGI	TGTACA	1 cut(s)	381
BsrI	ACTGG	3 cut(s)	193, 302, 320
BssECI	CCNNGG	2 cut(s)	83, 344
BssMI	GATC	3 cut(s)	60, 401, 459
BssNI	GRCGYC	1 cut(s)	332
BssT1I	CCWWGG	1 cut(s)	344
Bst2UI	CCWGG	2 cut(s)	84, 372
Bst4CI	ACNGT	3 cut(s)	106, 139, 145
BstACI	GRCGYC	1 cut(s)	332
BstAUI	TGTACA	1 cut(s)	381
BstDEI	CTNAG	1 cut(s)	156
BstF5I	GGATG	1 cut(s)	519
BstH2I	RGCGCY	1 cut(s)	335
BstHHI	GCGC	1 cut(s)	334
BstKTI	GATC	3 cut(s)	63, 404, 462
BstMBI	GATC	3 cut(s)	60, 401, 459
BstMCI	CGRYCG	1 cut(s)	432
BstMWI	GCNNNNNNNGC	1 cut(s)	244
BstNI	CCWGG	2 cut(s)	84, 372
BstNSI	RCATGY	1 cut(s)	213
BstSCI	CCNGG	2 cut(s)	82, 370
BstSFI	CTRYAG	1 cut(s)	312
BstV1I	GCAGC	7 cut(s)	42, 250, 253, 256, 309, 326, 421
BstXI	CCANNNNNNTGG	1 cut(s)	21
BstZI	CGGCCG	1 cut(s)	429
BsuRI	GGCC	2 cut(s)	10, 431
BtsCI	GGATG	1 cut(s)	519
BtsIMutI	CAGTG	2 cut(s)	102, 144
BveI	ACCTGC	2 cut(s)	319, 484
CaiI	CAGNNNCTG	1 cut(s)	104
CfoI	GCGC	1 cut(s)	334
Csp6I	GTAC	1 cut(s)	382
CspCI	CAANNNNNGTGG	2 cut(s)	462, 497
CviAII	CATG	4 cut(s)	6, 52, 210, 499
CviJI	RGCY	6 cut(s)	10, 95, 300, 317, 431, 503
CviKI_1	RGCY	6 cut(s)	10, 95, 300, 317, 431, 503
CviQI	GTAC	1 cut(s)	382
DdeI	CTNAG	1 cut(s)	156
DinI	GGCGCC	1 cut(s)	333
DpnI	GATC	3 cut(s)	62, 403, 461
DpnII	GATC	3 cut(s)	60, 401, 459
DrdI	GACNNNNNNGTC	1 cut(s)	148
DseDI	GACNNNNNNGTC	1 cut(s)	148
EaeI	YGGCCR	1 cut(s)	429
EagI	CGGCCG	1 cut(s)	429
EciI	GGCGGA	1 cut(s)	264
EclXI	CGGCCG	1 cut(s)	429
Eco130I	CCWWGG	1 cut(s)	344
Eco52I	CGGCCG	1 cut(s)	429
EcoRI	GAATTC	1 cut(s)	88
EcoRII	CCWGG	2 cut(s)	82, 370
EcoT14I	CCWWGG	1 cut(s)	344
EgeI	GGCGCC	1 cut(s)	333
EheI	GGCGCC	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	344
FaeI	CATG	4 cut(s)	9, 55, 213, 502
FaiI	YATR	8 cut(s)	7, 53, 211, 357, 399, 417, 448, 500
FatI	CATG	4 cut(s)	5, 51, 209, 498
FbaI	TGATCA	2 cut(s)	60, 459
FspBI	CTAG	1 cut(s)	291
GlaI	GCGC	1 cut(s)	333
GsuI	CTGGAG	1 cut(s)	210
HaeII	RGCGCY	1 cut(s)	335
HaeIII	GGCC	2 cut(s)	10, 431
HhaI	GCGC	1 cut(s)	334
Hin1I	GRCGYC	1 cut(s)	332
Hin1II	CATG	4 cut(s)	9, 55, 213, 502
Hin6I	GCGC	1 cut(s)	332
HinP1I	GCGC	1 cut(s)	332
HincII	GTYRAC	1 cut(s)	233
HindII	GTYRAC	1 cut(s)	233
HinfI	GANTC	1 cut(s)	250
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	3 cut(s)	153, 223, 233
Hpy188I	TCNGA	2 cut(s)	115, 159
Hpy8I	GTNNAC	3 cut(s)	153, 223, 233
HpyCH4III	ACNGT	3 cut(s)	106, 139, 145
HpyCH4IV	ACGT	1 cut(s)	467
HpyCH4V	TGCA	3 cut(s)	44, 297, 314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	244
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	1 cut(s)	467
Hsp92I	GRCGYC	1 cut(s)	332
Hsp92II	CATG	4 cut(s)	9, 55, 213, 502
HspAI	GCGC	1 cut(s)	332
KasI	GGCGCC	1 cut(s)	331
Ksp22I	TGATCA	2 cut(s)	60, 459
Kzo9I	GATC	3 cut(s)	60, 401, 459
LmnI	GCTCC	2 cut(s)	442, 489
LpnPI	CCDG	9 cut(s)	69, 96, 174, 315, 324, 333, 357, 384, 489
Lsp1109I	GCAGC	7 cut(s)	42, 250, 253, 256, 309, 326, 421
LweI	GCATC	1 cut(s)	504
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	1 cut(s)	467
MaeIII	GTNAC	4 cut(s)	100, 106, 139, 358
MalI	GATC	3 cut(s)	62, 403, 461
MboI	GATC	3 cut(s)	60, 401, 459
MboII	GAAGA	1 cut(s)	176
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	1 cut(s)	88
Mly113I	GGCGCC	1 cut(s)	332
MnlI	CCTC	6 cut(s)	21, 270, 282, 351, 497, 504
MslI	CAYNNNNRTG	1 cut(s)	356
MspA1I	CMGCKG	1 cut(s)	434
MspR9I	CCNGG	2 cut(s)	84, 372
MvaI	CCWGG	2 cut(s)	84, 372
MwoI	GCNNNNNNNGC	1 cut(s)	244
NarI	GGCGCC	1 cut(s)	332
NdeII	GATC	3 cut(s)	60, 401, 459
NlaIII	CATG	4 cut(s)	9, 55, 213, 502
NlaIV	GGNNCC	1 cut(s)	333
NmeAIII	GCCGAG	1 cut(s)	407
NmuCI	GTSAC	4 cut(s)	100, 106, 139, 358
NspI	RCATGY	1 cut(s)	213
PaqCI	CACCTGC	1 cut(s)	484
PfeI	GAWTC	1 cut(s)	250
PluTI	GGCGCC	1 cut(s)	335
Psp6I	CCWGG	2 cut(s)	82, 370
PspGI	CCWGG	2 cut(s)	82, 370
PspN4I	GGNNCC	1 cut(s)	333
PstI	CTGCAG	1 cut(s)	316
PstNI	CAGNNNCTG	1 cut(s)	104
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
RseI	CAYNNNNRTG	1 cut(s)	356
Sau3AI	GATC	3 cut(s)	60, 401, 459
ScrFI	CCNGG	2 cut(s)	84, 372
SduI	GDGCHC	1 cut(s)	32
SetI	ASST	6 cut(s)	262, 313, 350, 376, 470, 478
SfaNI	GCATC	1 cut(s)	504
SfcI	CTRYAG	1 cut(s)	312
SfoI	GGCGCC	1 cut(s)	333
SmiMI	CAYNNNNRTG	1 cut(s)	356
SpeI	ACTAGT	1 cut(s)	290
Sse9I	AATT	1 cut(s)	88
SsiI	CCGC	7 cut(s)	96, 269, 275, 335, 338, 432, 443
SspDI	GGCGCC	1 cut(s)	331
SspMI	CTAG	1 cut(s)	291
StyD4I	CCNGG	2 cut(s)	82, 370
StyI	CCWWGG	1 cut(s)	344
TaaI	ACNGT	3 cut(s)	106, 139, 145
TaiI	ACGT	1 cut(s)	470
TasI	AATT	1 cut(s)	88
TatI	WGTACW	1 cut(s)	381
TauI	GCSGC	4 cut(s)	98, 337, 340, 434
TfiI	GAWTC	1 cut(s)	250
TscAI	CASTG	2 cut(s)	109, 144
TseFI	GTSAC	4 cut(s)	100, 106, 139, 358
TseI	GCWGC	7 cut(s)	55, 238, 241, 244, 297, 314, 434
Tsp45I	GTSAC	4 cut(s)	100, 106, 139, 358
TspDTI	ATGAA	2 cut(s)	132, 340
TspRI	CASTG	2 cut(s)	109, 144
XapI	RAATTY	1 cut(s)	88
XceI	RCATGY	1 cut(s)	213
XspI	CTAG	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.