Rorug05G0052400
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004526
Physical Location & Seq
Reverse (-)
4572347 .. 4573384
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0052400.1

Sequence Viewer

Length: 642 bp
ATGTCTATGAATTTGATTCCCCATTACTCAACCCCGTCAATCTGTTACTCATTTCCAAACAGAACCCTTGTTTCTTCAGTCCAAAATCGTGCTAGAGCTACACTCAACAGTGATCAAAATCTTGGCAACCACCAAGTTTCTGTACTAAAATTCGATAGGAGAAATGTGCTTCTGGGTTTGGGAGGGCTAATCTTGGTCAATCATCCAAACTTAGCACGCGCAACCGAGTCAAAGAAGCTGGTTCGACTCACTGAGTTCCCGACAGCTTTAGACTCGGTGATCAGTGTCATGGTGCCGAGGCCGAGGAGGTCGAGGAGCAAGAAAGAAAAGGAAGAGGAAGAGGAGGTGCTGTCGATCGAAGGCATTGAGTTCGTGGCGGATAAGGCTGTGAAGTTCGATGTGCATGTGAATGATGACGAGGACGATCTAAGTCGACCCGACGCGTCTGAATTTGCCGGAAGCTTGGTGTTCTTGCCACAGAGCAGGAAGAGGGTGAGAACGAGTTTGCATTTGGGGATAACGGACTTGTTGGAGGATTTGGGAGCTGATGGTGATAGTAGTATTAAGGTGACTTTGGTGCCAAGGTATGTGCAACGACCTATCACCATTGGGAGGATCAAGATCGAGTATTTCAGTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

213

Amino Acids

23.86

Weight (kDa)

7.88

Isoelectric Point (pI)

55.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPO1_KFDV PF12143 86 - 210 3.3e-45 Chloroplastic Polyphenol Oxidase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 292, 577
AccI GTMKAC 1 cut(s) 433
AccII CGCG 2 cut(s) 219, 443
AciI CCGC 1 cut(s) 377
AclWI GGATC 1 cut(s) 623
AcsI RAATTY 3 cut(s) 10, 149, 449
AcuI CTGAAG 1 cut(s) 60
AfaI GTAC 1 cut(s) 144
AfiI CCNNNNNNNGG 1 cut(s) 612
AflIII ACRYGT 1 cut(s) 441
AluBI AGCT 5 cut(s) 98, 238, 266, 462, 545
AluI AGCT 5 cut(s) 98, 238, 266, 462, 545
AlwI GGATC 1 cut(s) 623
AoxI GGCC 1 cut(s) 299
ApoI RAATTY 3 cut(s) 10, 149, 449
AspLEI GCGC 1 cut(s) 221
AsuHPI GGTGA 5 cut(s) 289, 505, 563, 580, 595
BanI GGYRCC 2 cut(s) 292, 577
BccI CCATC 1 cut(s) 542
BcgI CGANNNNNNTGC 2 cut(s) 352, 386
BclI TGATCA 2 cut(s) 112, 279
BfaI CTAG 2 cut(s) 93, 640
BmiI GGNNCC 2 cut(s) 294, 579
BplI GAGNNNNNCTC 2 cut(s) 87, 119
BsaBI GATNNNNATC 2 cut(s) 117, 620
BsaJI CCNNGG 3 cut(s) 296, 302, 581
BsaXI ACNNNNNCTCC 2 cut(s) 335, 365
Bsc4I CCNNNNNNNGG 1 cut(s) 612
Bse8I GATNNNNATC 2 cut(s) 117, 620
BseDI CCNNGG 3 cut(s) 296, 302, 581
BseGI GGATG 1 cut(s) 202
BseJI GATNNNNATC 2 cut(s) 117, 620
BseLI CCNNNNNNNGG 1 cut(s) 612
BseMII CTCAG 1 cut(s) 243
BseRI GAGGAG 3 cut(s) 319, 328, 356
Bsh1236I CGCG 2 cut(s) 219, 443
Bsh1285I CGRYCG 1 cut(s) 357
BshFI GGCC 1 cut(s) 301
BshNI GGYRCC 2 cut(s) 292, 577
BsiEI CGRYCG 1 cut(s) 357
BsiSI CCGG 1 cut(s) 456
BslI CCNNNNNNNGG 1 cut(s) 612
BsnI GGCC 1 cut(s) 301
Bsp143I GATC 6 cut(s) 112, 279, 354, 424, 615, 621
BspACI CCGC 1 cut(s) 377
BspANI GGCC 1 cut(s) 301
BspCNI CTCAG 1 cut(s) 244
BspFNI CGCG 2 cut(s) 219, 443
BspLI GGNNCC 2 cut(s) 294, 579
BspPI GGATC 1 cut(s) 623
BspT107I GGYRCC 2 cut(s) 292, 577
BssECI CCNNGG 3 cut(s) 296, 302, 581
BssMI GATC 6 cut(s) 112, 279, 354, 424, 615, 621
BssT1I CCWWGG 1 cut(s) 581
Bst4CI ACNGT 1 cut(s) 110
Bst6I CTCTTC 3 cut(s) 327, 333, 482
BstC8I GCNNGC 1 cut(s) 217
BstDEI CTNAG 3 cut(s) 211, 252, 428
BstF5I GGATG 1 cut(s) 202
BstFNI CGCG 2 cut(s) 219, 443
BstHHI GCGC 1 cut(s) 221
BstKTI GATC 6 cut(s) 115, 282, 357, 427, 618, 624
BstMBI GATC 6 cut(s) 112, 279, 354, 424, 615, 621
BstMCI CGRYCG 1 cut(s) 357
BstMWI GCNNNNNNNGC 1 cut(s) 383
BstNSI RCATGY 1 cut(s) 407
BstUI CGCG 2 cut(s) 219, 443
BsuRI GGCC 1 cut(s) 301
BtsCI GGATG 1 cut(s) 202
BtsIMutI CAGTG 4 cut(s) 115, 249, 289, 640
Cac8I GCNNGC 1 cut(s) 217
CfoI GCGC 1 cut(s) 221
CseI GACGC 2 cut(s) 432, 449
Csp6I GTAC 1 cut(s) 143
CviAII CATG 2 cut(s) 289, 404
CviJI RGCY 8 cut(s) 98, 187, 238, 266, 301, 386, 462, 545
CviKI_1 RGCY 8 cut(s) 98, 187, 238, 266, 301, 386, 462, 545
CviQI GTAC 1 cut(s) 143
DdeI CTNAG 3 cut(s) 211, 252, 428
DpnI GATC 6 cut(s) 114, 281, 356, 426, 617, 623
DpnII GATC 6 cut(s) 112, 279, 354, 424, 615, 621
Eam1104I CTCTTC 3 cut(s) 327, 333, 482
EarI CTCTTC 3 cut(s) 327, 333, 482
EciI GGCGGA 1 cut(s) 392
Eco130I CCWWGG 1 cut(s) 581
Eco57I CTGAAG 1 cut(s) 60
EcoT14I CCWWGG 1 cut(s) 581
ErhI CCWWGG 1 cut(s) 581
FaeI CATG 2 cut(s) 292, 407
FaiI YATR 4 cut(s) 8, 290, 405, 588
FatI CATG 2 cut(s) 288, 403
FbaI TGATCA 2 cut(s) 112, 279
FblI GTMKAC 1 cut(s) 433
FokI GGATG 1 cut(s) 189
FspBI CTAG 2 cut(s) 93, 640
GlaI GCGC 1 cut(s) 220
HaeIII GGCC 1 cut(s) 301
HapII CCGG 1 cut(s) 456
HgaI GACGC 2 cut(s) 432, 449
HhaI GCGC 1 cut(s) 221
Hin1II CATG 2 cut(s) 292, 407
Hin6I GCGC 1 cut(s) 219
HinP1I GCGC 1 cut(s) 219
HincII GTYRAC 1 cut(s) 434
HindII GTYRAC 1 cut(s) 434
HindIII AAGCTT 1 cut(s) 460
HinfI GANTC 4 cut(s) 16, 227, 246, 272
HpaII CCGG 1 cut(s) 456
HphI GGTGA 5 cut(s) 289, 505, 563, 580, 595
Hpy166II GTNNAC 1 cut(s) 434
Hpy188I TCNGA 1 cut(s) 448
Hpy188III TCNNGA 2 cut(s) 259, 619
Hpy8I GTNNAC 1 cut(s) 434
Hpy99I CGWCG 1 cut(s) 443
HpyAV CCTTC 1 cut(s) 353
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4V TGCA 3 cut(s) 403, 508, 592
HpyF10VI GCNNNNNNNGC 1 cut(s) 383
HpyF3I CTNAG 3 cut(s) 211, 252, 428
Hsp92II CATG 2 cut(s) 292, 407
HspAI GCGC 1 cut(s) 219
Ksp22I TGATCA 2 cut(s) 112, 279
Kzo9I GATC 6 cut(s) 112, 279, 354, 424, 615, 621
LmnI GCTCC 2 cut(s) 315, 542
LpnPI CCDG 4 cut(s) 158, 224, 469, 469
MaeI CTAG 2 cut(s) 93, 640
MaeIII GTNAC 2 cut(s) 44, 568
MalI GATC 6 cut(s) 114, 281, 356, 426, 617, 623
MboI GATC 6 cut(s) 112, 279, 354, 424, 615, 621
MboII GAAGA 4 cut(s) 66, 344, 350, 499
MluCI AATT 3 cut(s) 10, 149, 449
MluI ACGCGT 1 cut(s) 441
MlyI GAGTC 3 cut(s) 236, 240, 266
MmeI TCCRAC 1 cut(s) 510
MseI TTAA 1 cut(s) 564
MslI CAYNNNNRTG 1 cut(s) 408
MspI CCGG 1 cut(s) 456
MvnI CGCG 2 cut(s) 219, 443
MwoI GCNNNNNNNGC 1 cut(s) 383
NdeII GATC 6 cut(s) 112, 279, 354, 424, 615, 621
NlaIII CATG 2 cut(s) 292, 407
NlaIV GGNNCC 2 cut(s) 294, 579
NmeAIII GCCGAG 2 cut(s) 321, 327
NmuCI GTSAC 1 cut(s) 568
NspI RCATGY 1 cut(s) 407
PfeI GAWTC 1 cut(s) 16
Ple19I CGATCG 1 cut(s) 357
PleI GAGTC 3 cut(s) 235, 240, 266
PpsI GAGTC 3 cut(s) 235, 240, 266
PspN4I GGNNCC 2 cut(s) 294, 579
PvuI CGATCG 1 cut(s) 357
RsaI GTAC 1 cut(s) 144
RsaNI GTAC 1 cut(s) 143
RseI CAYNNNNRTG 1 cut(s) 408
SalI GTCGAC 1 cut(s) 432
SaqAI TTAA 1 cut(s) 564
Sau3AI GATC 6 cut(s) 112, 279, 354, 424, 615, 621
SchI GAGTC 3 cut(s) 236, 240, 266
SmiMI CAYNNNNRTG 1 cut(s) 408
Sse9I AATT 3 cut(s) 10, 149, 449
SsiI CCGC 1 cut(s) 377
SspMI CTAG 2 cut(s) 93, 640
StyI CCWWGG 1 cut(s) 581
TaaI ACNGT 1 cut(s) 110
TaqI TCGA 8 cut(s) 153, 244, 311, 353, 357, 396, 433, 624
TasI AATT 3 cut(s) 10, 149, 449
TatI WGTACW 1 cut(s) 142
TfiI GAWTC 1 cut(s) 16
Tru1I TTAA 1 cut(s) 564
Tru9I TTAA 1 cut(s) 564
TscAI CASTG 4 cut(s) 115, 256, 289, 640
TseFI GTSAC 1 cut(s) 568
Tsp45I GTSAC 1 cut(s) 568
TspDTI ATGAA 1 cut(s) 23
TspGWI ACGGA 1 cut(s) 536
TspRI CASTG 4 cut(s) 115, 256, 289, 640
XapI RAATTY 3 cut(s) 10, 149, 449
XceI RCATGY 1 cut(s) 407
XmiI GTMKAC 1 cut(s) 433
XspI CTAG 2 cut(s) 93, 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.