Rh5CG153600
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0004526
Physical Location & Seq
Forward (+)
14259799 .. 14261657
1859 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG153600.1

Sequence Viewer

Length: 561 bp
ATGCACAAACTCTTAGGCAACAGGTGGTCATTGATAGCCGGAAGGATTCCGGGCCGAACTGACAATGAAATAAAGAACTACTGGAATTCCATTCTAAGGAAGAACGTGGGAGAAGAAAAAGAGAGAGAATCAGAAGTGTCGAGAAACGAGATAATCAAGGAGAACTTGCCATCCCTCGCTGAGGACGATGGTCATCCACATTTGACCAAATGCGATGAAGTTCTTGGAGGAGGAGGAGGATTGGATTGTTTTGCCAGTGATGTTAATGTAGAAGAAGATCACCGGCATCGTTGTCTTGGCCGTACTAGTACCGATACTACTACACTGAGTCCCGGAGTGGGAGTCGAAATCGGAGGAGGGGCAAACCAAGATATTCAACCAACAGGGGATGATCTCAATTATAACGCTATAACCTGGAAAGATTCGATAATGGATCTGAATGGAGGCCAACTCGACATATCTGAATTCCTCCAAAGTGATGACTTTTCGACGTTTTGGGATTCAGATAGGCTCATGAATTTTGAAATCGGAGGTTGCAGCACCATGAATTATGATTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

186

Amino Acids

20.65

Weight (kDa)

4.5

Isoelectric Point (pI)

48.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 2 - 32 1.9e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 402
AclWI GGATC 1 cut(s) 441
AcoI YGGCCR 1 cut(s) 298
AcsI RAATTY 3 cut(s) 85, 464, 517
AfaI GTAC 2 cut(s) 304, 310
AfiI CCNNNNNNNGG 3 cut(s) 96, 181, 338
AgsI TTSAA 2 cut(s) 377, 524
AhlI ACTAGT 1 cut(s) 305
AjnI CCWGG 1 cut(s) 413
AloI GAACNNNNNNTCC 2 cut(s) 155, 187
AlwI GGATC 1 cut(s) 441
AoxI GGCC 3 cut(s) 52, 298, 445
ApeKI GCWGC 1 cut(s) 537
ApoI RAATTY 3 cut(s) 85, 464, 517
AspS9I GGNCC 1 cut(s) 52
AsuC2I CCSGG 2 cut(s) 51, 333
AsuHPI GGTGA 1 cut(s) 272
BbvCI CCTCAGC 1 cut(s) 180
BbvI GCAGC 1 cut(s) 549
BccI CCATC 2 cut(s) 178, 182
BceAI ACGGC 1 cut(s) 285
BciT130I CCWGG 1 cut(s) 415
BcnI CCSGG 2 cut(s) 51, 333
BcuI ACTAGT 1 cut(s) 305
BfaI CTAG 1 cut(s) 306
BisI GCNGC 1 cut(s) 538
BlsI GCNGC 1 cut(s) 539
Bme1390I CCNGG 3 cut(s) 51, 333, 415
BmgT120I GGNCC 1 cut(s) 52
BmrFI CCNGG 3 cut(s) 51, 333, 415
BmsI GCATC 1 cut(s) 295
BoxI GACNNNNGTC 1 cut(s) 189
BplI GAGNNNNNCTC 2 cut(s) 435, 467
Bpu10I CCTNAGC 1 cut(s) 180
BpuMI CCSGG 2 cut(s) 51, 333
BsaBI GATNNNNATC 1 cut(s) 192
BsaXI ACNNNNNCTCC 2 cut(s) 327, 357
Bsc4I CCNNNNNNNGG 3 cut(s) 96, 181, 338
Bse118I RCCGGY 1 cut(s) 282
Bse1I ACTGG 2 cut(s) 86, 255
Bse8I GATNNNNATC 1 cut(s) 192
BseBI CCWGG 1 cut(s) 415
BseGI GGATG 3 cut(s) 170, 193, 394
BseJI GATNNNNATC 1 cut(s) 192
BseLI CCNNNNNNNGG 3 cut(s) 96, 181, 338
BseMII CTCAG 2 cut(s) 171, 317
BseNI ACTGG 2 cut(s) 86, 255
BseRI GAGGAG 4 cut(s) 243, 246, 249, 369
BseXI GCAGC 1 cut(s) 549
BshFI GGCC 3 cut(s) 54, 300, 447
BsiSI CCGG 4 cut(s) 39, 50, 283, 333
BslFI GGGAC 1 cut(s) 315
BslI CCNNNNNNNGG 3 cut(s) 96, 181, 338
BsmFI GGGAC 1 cut(s) 315
BsnI GGCC 3 cut(s) 54, 300, 447
Bsp143I GATC 3 cut(s) 277, 391, 433
BspANI GGCC 3 cut(s) 54, 300, 447
BspCNI CTCAG 2 cut(s) 172, 318
BspHI TCATGA 1 cut(s) 513
BspPI GGATC 1 cut(s) 441
BsrFI RCCGGY 1 cut(s) 282
BsrI ACTGG 2 cut(s) 86, 255
BssAI RCCGGY 1 cut(s) 282
BssMI GATC 3 cut(s) 277, 391, 433
Bst2UI CCWGG 1 cut(s) 415
BstDEI CTNAG 4 cut(s) 13, 95, 180, 326
BstENI CCTNNNNNAGG 1 cut(s) 179
BstF5I GGATG 3 cut(s) 170, 193, 394
BstKTI GATC 3 cut(s) 280, 394, 436
BstMBI GATC 3 cut(s) 277, 391, 433
BstNI CCWGG 1 cut(s) 415
BstPAI GACNNNNGTC 1 cut(s) 189
BstSCI CCNGG 3 cut(s) 49, 331, 413
BstV1I GCAGC 1 cut(s) 549
BstX2I RGATCY 1 cut(s) 433
BstYI RGATCY 1 cut(s) 433
BsuRI GGCC 3 cut(s) 54, 300, 447
BtgZI GCGATG 1 cut(s) 228
BtsCI GGATG 3 cut(s) 170, 193, 394
BtsIMutI CAGTG 2 cut(s) 262, 323
CciI TCATGA 1 cut(s) 513
Cfr10I RCCGGY 1 cut(s) 282
Cfr13I GGNCC 1 cut(s) 52
Csp6I GTAC 2 cut(s) 303, 309
CviAII CATG 2 cut(s) 514, 544
CviJI RGCY 5 cut(s) 38, 54, 300, 447, 511
CviKI_1 RGCY 5 cut(s) 38, 54, 300, 447, 511
CviQI GTAC 2 cut(s) 303, 309
DdeI CTNAG 4 cut(s) 13, 95, 180, 326
DpnI GATC 3 cut(s) 279, 393, 435
DpnII GATC 3 cut(s) 277, 391, 433
EaeI YGGCCR 1 cut(s) 298
EcoNI CCTNNNNNAGG 1 cut(s) 179
EcoRI GAATTC 2 cut(s) 85, 464
EcoRII CCWGG 1 cut(s) 413
FaeI CATG 2 cut(s) 517, 547
FaiI YATR 7 cut(s) 402, 410, 458, 515, 545, 552, 559
FalI AAGNNNNNCTT 2 cut(s) 149, 181
FaqI GGGAC 1 cut(s) 315
FatI CATG 2 cut(s) 513, 543
Fnu4HI GCNGC 1 cut(s) 538
FokI GGATG 3 cut(s) 157, 180, 401
Fsp4HI GCNGC 1 cut(s) 538
FspBI CTAG 1 cut(s) 306
GluI GCNGC 1 cut(s) 538
HaeIII GGCC 3 cut(s) 54, 300, 447
HapII CCGG 4 cut(s) 39, 50, 283, 333
Hin1II CATG 2 cut(s) 517, 547
HinfI GANTC 6 cut(s) 46, 128, 328, 342, 422, 500
HpaII CCGG 4 cut(s) 39, 50, 283, 333
HphI GGTGA 1 cut(s) 272
Hpy188I TCNGA 6 cut(s) 133, 353, 438, 463, 505, 530
Hpy188III TCNNGA 2 cut(s) 141, 514
Hpy99I CGWCG 1 cut(s) 493
HpyAV CCTTC 1 cut(s) 36
HpyCH4IV ACGT 2 cut(s) 105, 491
HpyCH4V TGCA 2 cut(s) 4, 537
HpyF3I CTNAG 4 cut(s) 13, 95, 180, 326
HpySE526I ACGT 2 cut(s) 105, 491
Hsp92II CATG 2 cut(s) 517, 547
Kzo9I GATC 3 cut(s) 277, 391, 433
Lsp1109I GCAGC 1 cut(s) 549
LweI GCATC 1 cut(s) 295
MaeI CTAG 1 cut(s) 306
MaeII ACGT 2 cut(s) 105, 491
MalI GATC 3 cut(s) 279, 393, 435
MboI GATC 3 cut(s) 277, 391, 433
MboII GAAGA 4 cut(s) 112, 125, 284, 287
MflI RGATCY 1 cut(s) 433
MluCI AATT 5 cut(s) 85, 397, 464, 517, 547
MlyI GAGTC 2 cut(s) 337, 351
MseI TTAA 1 cut(s) 264
MspI CCGG 4 cut(s) 39, 50, 283, 333
MspR9I CCNGG 3 cut(s) 51, 333, 415
MvaI CCWGG 1 cut(s) 415
NciI CCSGG 2 cut(s) 51, 333
NdeII GATC 3 cut(s) 277, 391, 433
NlaIII CATG 2 cut(s) 517, 547
PagI TCATGA 1 cut(s) 513
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PfeI GAWTC 4 cut(s) 46, 128, 422, 500
PfoI TCCNGGA 1 cut(s) 331
PkrI GCNGC 1 cut(s) 539
PleI GAGTC 2 cut(s) 336, 350
PpsI GAGTC 2 cut(s) 336, 350
PshAI GACNNNNGTC 1 cut(s) 189
PsiI TTATAA 1 cut(s) 402
Psp6I CCWGG 1 cut(s) 413
PspGI CCWGG 1 cut(s) 413
PspPI GGNCC 1 cut(s) 52
PsuI RGATCY 1 cut(s) 433
RsaI GTAC 2 cut(s) 304, 310
RsaNI GTAC 2 cut(s) 303, 309
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 1 cut(s) 538
Sau3AI GATC 3 cut(s) 277, 391, 433
Sau96I GGNCC 1 cut(s) 52
SchI GAGTC 2 cut(s) 337, 351
ScrFI CCNGG 3 cut(s) 51, 333, 415
SetI ASST 5 cut(s) 26, 108, 416, 494, 535
SfaNI GCATC 1 cut(s) 295
SpeI ACTAGT 1 cut(s) 305
Sse9I AATT 5 cut(s) 85, 397, 464, 517, 547
SspMI CTAG 1 cut(s) 306
StyD4I CCNGG 3 cut(s) 49, 331, 413
TaiI ACGT 2 cut(s) 108, 494
TaqI TCGA 5 cut(s) 140, 345, 425, 453, 488
TasI AATT 5 cut(s) 85, 397, 464, 517, 547
TfiI GAWTC 4 cut(s) 46, 128, 422, 500
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TscAI CASTG 2 cut(s) 262, 330
TseI GCWGC 1 cut(s) 537
TspDTI ATGAA 4 cut(s) 81, 231, 530, 560
TspRI CASTG 2 cut(s) 262, 330
XagI CCTNNNNNAGG 1 cut(s) 179
XapI RAATTY 3 cut(s) 85, 464, 517
XspI CTAG 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.