Rorug03G0326200
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0004526
Physical Location & Seq
Reverse (-)
35980721 .. 35989821
9101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0326200.1

Sequence Viewer

Length: 1707 bp
ATGACTGCCTACAAGAGAATCATTGGCTTTGTGCCTCAAGACGATATTGTGCATGGAAACTTGACTGTGGAGGAGAATCTCCGATTTAGTGCAAGGTGCAGACTGTCTGCCAACATGCCAAAACCTGATAAAGTCCTGGTTGTTGAAAGAGTTATTGAGGCTCTGGGACTAGGGGCATTGAGATATTCTGTGGTAGGTACTGTGGAGAGGCGTGGAATCTCTAGGGGTAAAGGACTGGGCGAGCGGTACATAAATCAAACTAAGTATAGTAGCATGGATTTTGGTTTGGGTACACTTGTGACTATCTTGTGGATTTTCTTATTGCAGAGGCTGCATCATATAGTATTGCTGTTTTCATGGACATGTCATTTTGGGAGACCCTTGATTAGTTTTCCTCAGCATCGCCGCAGTGGCAGTGGGAAAACGCCACCGCCTGATTCGCCACCGTTGCCGCTATGCATCCCCTCCTGGGTTTGCTTGATATATTGGAGGGACTGCGAGGATCTATGCCTCTATGGAGGCTTCTCTCCTGCTGTGATCGGTTCTACTCTATGGAGGCCGAGTGTTATCTTAATTCTATGCAAGTTTTTGGCAATTGTAAAGACAGTTTTGAAAATTCCAGGGTTCACTGACAATATTTTCACTCATCTCCTAGCTGGTCTGGGTGCTGGTTTTTTTGCAGTTTCTATTGGCTCTCCTGTTGATGTGGTCTCTCTCTCAAAACTGACTAGCCTGGAATTAAGGCCACATGCTATTGAGAGTTGTGATCTGTCAAAATATCAGTTGATTTGTGGGATTGTTACATGTTGCTGTGGGGATGATGGTCGAATTCGAGGATGGAGGTGGAAGGATTCCATACAGTCCGACATGCCTATTAATTTGCAAGGAGACCAAGTGAAGCCAGTACTTGACCTGGTAAATCCTCAACGTAATATGGACACTGGCGAGTACTATTTCTTAGAGTTGAACCCTCGGTTGCAGGTGGAGCACCCGGTCACTAAGTGGATAGCAGAAATAAATCTGCTATCAGCCCAAGTTGCAGTTGGGATGGGCATTCCTCTTTGGCAAATTCCTGAGATAAGGCGGTTCTATGGAATGGAACATGGTAGTGGATATGATGCTTGGAGAAAGACGTCAGTGGTTGCCACTCCATTTGACTTTGACAAGGCAGAATCTAAAAGGTCAAAAGGTCATTGTGTTGCTGTGCGTGTAACAAGTGAGGATCCAGATGATGGCTTTAAACCTGCTAGTGGGAAAGTTCAGGAGCTGAGTTTTAAAAGCAAGCCAAATGTTTGGGCGTACTTTTCTGTTAAGGCTTGTGGTAGTGGTCGGGGTTTATCAGTTTGGAACCTTCCTGCTTCTGAATGCATTTCAAGGACTTCAACTCGTGCATCTGTACAGGATGTAGTATTTGATGCAATGTGCATGGATGCTACTGCATTCTGCAAAATACCATTAGATGGATTCCAAGCAACCCCTATGCTTCAGATTCTAGATCGAAGTGGTAATGCAGCTTCGTTACCAGAGCACCCTGTATTTTCTACCTTACAGTATCTGCAAGAGCTTTATCTGAGGTTATATTCAACGTTGATGGAGGAGAGGGTGGTTTTGAAATGGAGGAAGAATGAGGATGTTGTTCTGTGGTTTGGGTTGTCACTGTTTCTGCGTTTTCCTCTTGCTTCGTCACTGAACGATGAAGGTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

568

Amino Acids

63.46

Weight (kDa)

8.47

Isoelectric Point (pI)

44.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CPSase_L_D2 PF02786 313 - 355 2.1e-07 Carbamoyl-phosphate synthase L chain, ATP binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 970
AatII GACGTC 1 cut(s) 1136
Acc36I ACCTGC 2 cut(s) 970, 1252
AccB7I CCANNNNNTGG 2 cut(s) 1232, 1460
AccBSI CCGCTC 1 cut(s) 244
AciI CCGC 5 cut(s) 244, 406, 431, 452, 1084
AclI AACGTT 1 cut(s) 1586
AclWI GGATC 3 cut(s) 510, 1217, 1230
AcsI RAATTY 3 cut(s) 615, 828, 1068
AcuI CTGAAG 1 cut(s) 1469
AcyI GRCGYC 1 cut(s) 1133
AdeI CACNNNGTG 1 cut(s) 1002
AfaI GTAC 7 cut(s) 199, 248, 292, 906, 950, 1301, 1398
AfiI CCNNNNNNNGG 4 cut(s) 469, 1232, 1250, 1460
AflIII ACRYGT 2 cut(s) 362, 803
AgsI TTSAA 7 cut(s) 146, 613, 967, 1374, 1383, 1584, 1612
AjnI CCWGG 5 cut(s) 135, 467, 619, 732, 912
AluBI AGCT 4 cut(s) 656, 1267, 1514, 1564
AluI AGCT 4 cut(s) 656, 1267, 1514, 1564
Alw21I GWGCWC 2 cut(s) 990, 1530
Alw26I GTCTC 3 cut(s) 370, 715, 882
AlwI GGATC 3 cut(s) 510, 1217, 1230
AlwNI CAGNNNCTG 3 cut(s) 331, 1267, 1555
AoxI GGCC 2 cut(s) 557, 743
ApeKI GCWGC 2 cut(s) 331, 1511
ApoI RAATTY 3 cut(s) 615, 828, 1068
AseI ATTAAT 1 cut(s) 876
AsuC2I CCSGG 1 cut(s) 992
BaeI ACNNNNGTAYC 2 cut(s) 282, 315
BamHI GGATCC 1 cut(s) 1222
BarI GAAGNNNNNNTAC 2 cut(s) 1498, 1530
BauI CACGAG 1 cut(s) 1386
Bbv12I GWGCWC 2 cut(s) 990, 1530
BbvCI CCTCAGC 1 cut(s) 396
BbvI GCAGC 2 cut(s) 318, 1523
BccI CCATC 6 cut(s) 815, 831, 1042, 1226, 1454, 1585
BciT130I CCWGG 5 cut(s) 137, 469, 621, 734, 914
BcnI CCSGG 1 cut(s) 992
BcoDI GTCTC 3 cut(s) 370, 715, 882
BfaI CTAG 6 cut(s) 170, 222, 653, 729, 1248, 1493
BfuAI ACCTGC 2 cut(s) 970, 1252
BglI GCCNNNNNGGC 1 cut(s) 411
BisI GCNGC 4 cut(s) 332, 406, 452, 1512
BlsI GCNGC 4 cut(s) 333, 407, 453, 1513
BmcAI AGTACT 2 cut(s) 906, 950
Bme1390I CCNGG 6 cut(s) 137, 469, 621, 734, 914, 992
BmiI GGNNCC 2 cut(s) 1224, 1349
BmrFI CCNGG 6 cut(s) 137, 469, 621, 734, 914, 992
BmrI ACTGGG 1 cut(s) 245
BmsI GCATC 7 cut(s) 343, 409, 468, 1108, 1400, 1405, 1420
BmuI ACTGGG 1 cut(s) 245
Bpu10I CCTNAGC 1 cut(s) 396
BpuEI CTTGAG 1 cut(s) 21
BpuMI CCSGG 1 cut(s) 992
BsaHI GRCGYC 1 cut(s) 1133
BsaI GGTCTC 3 cut(s) 370, 715, 882
BsaJI CCNNGG 3 cut(s) 468, 620, 971
BsaXI ACNNNNNCTCC 4 cut(s) 547, 577, 879, 909
Bsc4I CCNNNNNNNGG 4 cut(s) 469, 1232, 1250, 1460
Bse1I ACTGG 3 cut(s) 240, 902, 946
Bse3DI GCAATG 1 cut(s) 1425
BseBI CCWGG 5 cut(s) 137, 469, 621, 734, 914
BseDI CCNNGG 3 cut(s) 468, 620, 971
BseGI GGATG 7 cut(s) 459, 823, 842, 1053, 1408, 1435, 1636
BseLI CCNNNNNNNGG 4 cut(s) 469, 1232, 1250, 1460
BseMI GCAATG 1 cut(s) 1425
BseMII CTCAG 4 cut(s) 410, 1065, 1259, 1562
BseNI ACTGG 3 cut(s) 240, 902, 946
BseRI GAGGAG 2 cut(s) 86, 1610
BseXI GCAGC 2 cut(s) 318, 1523
BsgI GTGCAG 1 cut(s) 118
BshFI GGCC 2 cut(s) 559, 745
BsiHKAI GWGCWC 2 cut(s) 990, 1530
BsiSI CCGG 1 cut(s) 992
BslFI GGGAC 2 cut(s) 180, 506
BslI CCNNNNNNNGG 4 cut(s) 469, 1232, 1250, 1460
BsmAI GTCTC 3 cut(s) 370, 715, 882
BsmFI GGGAC 2 cut(s) 180, 506
BsmI GAATGC 3 cut(s) 1053, 1370, 1439
BsnI GGCC 2 cut(s) 559, 745
Bso31I GGTCTC 3 cut(s) 370, 715, 882
Bsp1286I GDGCHC 2 cut(s) 990, 1530
Bsp1407I TGTACA 1 cut(s) 1396
Bsp143I GATC 5 cut(s) 502, 537, 766, 1222, 1495
BspACI CCGC 5 cut(s) 244, 406, 431, 452, 1084
BspANI GGCC 2 cut(s) 559, 745
BspCNI CTCAG 4 cut(s) 409, 1066, 1260, 1563
BspLI GGNNCC 2 cut(s) 1224, 1349
BspMI ACCTGC 2 cut(s) 970, 1252
BspPI GGATC 3 cut(s) 510, 1217, 1230
BspTNI GGTCTC 3 cut(s) 370, 715, 882
BsrBI CCGCTC 1 cut(s) 244
BsrDI GCAATG 1 cut(s) 1425
BsrGI TGTACA 1 cut(s) 1396
BsrI ACTGG 3 cut(s) 240, 902, 946
BssECI CCNNGG 3 cut(s) 468, 620, 971
BssMI GATC 5 cut(s) 502, 537, 766, 1222, 1495
BssNI GRCGYC 1 cut(s) 1133
BssSI CACGAG 1 cut(s) 1386
Bst2BI CACGAG 1 cut(s) 1386
Bst2UI CCWGG 5 cut(s) 137, 469, 621, 734, 914
Bst4CI ACNGT 8 cut(s) 67, 105, 202, 447, 607, 861, 1551, 1659
BstACI GRCGYC 1 cut(s) 1133
BstAPI GCANNNNNTGC 1 cut(s) 331
BstAUI TGTACA 1 cut(s) 1396
BstC8I GCNNGC 2 cut(s) 242, 1283
BstDEI CTNAG 7 cut(s) 261, 396, 958, 999, 1074, 1268, 1571
BstF5I GGATG 7 cut(s) 459, 823, 842, 1053, 1408, 1435, 1636
BstKTI GATC 5 cut(s) 505, 540, 769, 1225, 1498
BstMAI GTCTC 3 cut(s) 370, 715, 882
BstMBI GATC 5 cut(s) 502, 537, 766, 1222, 1495
BstMWI GCNNNNNNNGC 6 cut(s) 331, 411, 439, 448, 985, 1037
BstNI CCWGG 5 cut(s) 137, 469, 621, 734, 914
BstNSI RCATGY 5 cut(s) 118, 366, 752, 807, 871
BstSCI CCNGG 6 cut(s) 135, 467, 619, 732, 912, 990
BstV1I GCAGC 2 cut(s) 318, 1523
BstX2I RGATCY 2 cut(s) 502, 1222
BstXI CCANNNNNNTGG 1 cut(s) 1293
BstYI RGATCY 2 cut(s) 502, 1222
BsuRI GGCC 2 cut(s) 559, 745
BtgZI GCGATG 1 cut(s) 386
BtsCI GGATG 7 cut(s) 459, 823, 842, 1053, 1408, 1435, 1636
BtsI GCAGTG 2 cut(s) 415, 421
BtsIMutI CAGTG 7 cut(s) 415, 421, 627, 939, 1143, 1655, 1685
BveI ACCTGC 2 cut(s) 970, 1252
Cac8I GCNNGC 2 cut(s) 242, 1283
CaiI CAGNNNCTG 3 cut(s) 331, 1267, 1555
CsiI ACCWGGT 1 cut(s) 912
Csp6I GTAC 7 cut(s) 198, 247, 291, 905, 949, 1300, 1397
CspCI CAANNNNNGTGG 2 cut(s) 1135, 1170
CviQI GTAC 7 cut(s) 198, 247, 291, 905, 949, 1300, 1397
DdeI CTNAG 7 cut(s) 261, 396, 958, 999, 1074, 1268, 1571
DpnI GATC 5 cut(s) 504, 539, 768, 1224, 1497
DpnII GATC 5 cut(s) 502, 537, 766, 1222, 1495
DraI TTTAAA 2 cut(s) 1240, 1276
DraIII CACNNNGTG 1 cut(s) 1002
Eco31I GGTCTC 3 cut(s) 370, 715, 882
Eco57I CTGAAG 1 cut(s) 1469
EcoRI GAATTC 1 cut(s) 828
EcoRII CCWGG 5 cut(s) 135, 467, 619, 732, 912
EcoT22I ATGCAT 2 cut(s) 461, 1370
FaqI GGGAC 2 cut(s) 180, 506
Fnu4HI GCNGC 4 cut(s) 332, 406, 452, 1512
FokI GGATG 7 cut(s) 446, 830, 849, 1060, 1415, 1442, 1643
Fsp4HI GCNGC 4 cut(s) 332, 406, 452, 1512
FspBI CTAG 6 cut(s) 170, 222, 653, 729, 1248, 1493
GluI GCNGC 4 cut(s) 332, 406, 452, 1512
HaeIII GGCC 2 cut(s) 559, 745
HapII CCGG 1 cut(s) 992
Hin1I GRCGYC 1 cut(s) 1133
HinfI GANTC 8 cut(s) 18, 76, 216, 437, 851, 1172, 1464, 1489
HpaII CCGG 1 cut(s) 992
Hpy166II GTNNAC 2 cut(s) 293, 627
Hpy188I TCNGA 5 cut(s) 83, 865, 1363, 1488, 1572
Hpy188III TCNNGA 5 cut(s) 38, 1073, 1226, 1262, 1493
Hpy8I GTNNAC 2 cut(s) 293, 627
HpyAV CCTTC 3 cut(s) 841, 1361, 1691
HpyCH4III ACNGT 8 cut(s) 67, 105, 202, 447, 607, 861, 1551, 1659
HpyCH4IV ACGT 3 cut(s) 928, 1133, 1586
HpyF10VI GCNNNNNNNGC 6 cut(s) 331, 411, 439, 448, 985, 1037
HpyF3I CTNAG 7 cut(s) 261, 396, 958, 999, 1074, 1268, 1571
HpySE526I ACGT 3 cut(s) 928, 1133, 1586
Hsp92I GRCGYC 1 cut(s) 1133
Kzo9I GATC 5 cut(s) 502, 537, 766, 1222, 1495
LmnI GCTCC 2 cut(s) 985, 1264
Lsp1109I GCAGC 2 cut(s) 318, 1523
LweI GCATC 7 cut(s) 343, 409, 468, 1108, 1400, 1405, 1420
MabI ACCWGGT 1 cut(s) 912
MaeI CTAG 6 cut(s) 170, 222, 653, 729, 1248, 1493
MaeII ACGT 3 cut(s) 928, 1133, 1586
MaeIII GTNAC 7 cut(s) 298, 799, 994, 1210, 1518, 1653, 1683
MalI GATC 5 cut(s) 504, 539, 768, 1224, 1497
MbiI CCGCTC 1 cut(s) 244
MboI GATC 5 cut(s) 502, 537, 766, 1222, 1495
MboII GAAGA 1 cut(s) 1633
MfeI CAATTG 1 cut(s) 594
MflI RGATCY 2 cut(s) 502, 1222
MhlI GDGCHC 2 cut(s) 990, 1530
MluCI AATT 7 cut(s) 573, 594, 615, 737, 828, 877, 1068
MmeI TCCRAC 1 cut(s) 888
Mph1103I ATGCAT 2 cut(s) 461, 1370
MseI TTAA 6 cut(s) 572, 740, 876, 1239, 1275, 1311
MslI CAYNNNNRTG 2 cut(s) 361, 1107
MspI CCGG 1 cut(s) 992
MspR9I CCNGG 6 cut(s) 137, 469, 621, 734, 914, 992
MunI CAATTG 1 cut(s) 594
Mva1269I GAATGC 3 cut(s) 1053, 1370, 1439
MvaI CCWGG 5 cut(s) 137, 469, 621, 734, 914
MwoI GCNNNNNNNGC 6 cut(s) 331, 411, 439, 448, 985, 1037
NciI CCSGG 1 cut(s) 992
NdeII GATC 5 cut(s) 502, 537, 766, 1222, 1495
NlaIV GGNNCC 2 cut(s) 1224, 1349
NmeAIII GCCGAG 1 cut(s) 585
NmuCI GTSAC 4 cut(s) 298, 994, 1653, 1683
NsiI ATGCAT 2 cut(s) 461, 1370
NspI RCATGY 5 cut(s) 118, 366, 752, 807, 871
PaqCI CACCTGC 1 cut(s) 970
PciI ACATGT 2 cut(s) 362, 803
PctI GAATGC 3 cut(s) 1053, 1370, 1439
PfeI GAWTC 8 cut(s) 18, 76, 216, 437, 851, 1172, 1464, 1489
PflMI CCANNNNNTGG 2 cut(s) 1232, 1460
PkrI GCNGC 4 cut(s) 333, 407, 453, 1513
PscI ACATGT 2 cut(s) 362, 803
PshBI ATTAAT 1 cut(s) 876
Psp1406I AACGTT 1 cut(s) 1586
Psp6I CCWGG 5 cut(s) 135, 467, 619, 732, 912
PspGI CCWGG 5 cut(s) 135, 467, 619, 732, 912
PspN4I GGNNCC 2 cut(s) 1224, 1349
PstNI CAGNNNCTG 3 cut(s) 331, 1267, 1555
PsuI RGATCY 2 cut(s) 502, 1222
RsaI GTAC 7 cut(s) 199, 248, 292, 906, 950, 1301, 1398
RsaNI GTAC 7 cut(s) 198, 247, 291, 905, 949, 1300, 1397
RseI CAYNNNNRTG 2 cut(s) 361, 1107
SaqAI TTAA 6 cut(s) 572, 740, 876, 1239, 1275, 1311
SatI GCNGC 4 cut(s) 332, 406, 452, 1512
Sau3AI GATC 5 cut(s) 502, 537, 766, 1222, 1495
ScaI AGTACT 2 cut(s) 906, 950
ScrFI CCNGG 6 cut(s) 137, 469, 621, 734, 914, 992
SduI GDGCHC 2 cut(s) 990, 1530
SexAI ACCWGGT 1 cut(s) 912
SfaNI GCATC 7 cut(s) 343, 409, 468, 1108, 1400, 1405, 1420
SmiMI CAYNNNNRTG 2 cut(s) 361, 1107
SmlI CTYRAG 1 cut(s) 36
SmoI CTYRAG 1 cut(s) 36
Sse9I AATT 7 cut(s) 573, 594, 615, 737, 828, 877, 1068
SsiI CCGC 5 cut(s) 244, 406, 431, 452, 1084
SspI AATATT 1 cut(s) 637
SspMI CTAG 6 cut(s) 170, 222, 653, 729, 1248, 1493
StyD4I CCNGG 6 cut(s) 135, 467, 619, 732, 912, 990
TaaI ACNGT 8 cut(s) 67, 105, 202, 447, 607, 861, 1551, 1659
TaiI ACGT 3 cut(s) 931, 1136, 1589
TaqI TCGA 3 cut(s) 826, 832, 1498
TasI AATT 7 cut(s) 573, 594, 615, 737, 828, 877, 1068
TatI WGTACW 3 cut(s) 904, 948, 1396
TauI GCSGC 2 cut(s) 408, 454
TfiI GAWTC 8 cut(s) 18, 76, 216, 437, 851, 1172, 1464, 1489
Tru1I TTAA 6 cut(s) 572, 740, 876, 1239, 1275, 1311
Tru9I TTAA 6 cut(s) 572, 740, 876, 1239, 1275, 1311
TscAI CASTG 7 cut(s) 415, 421, 634, 946, 1143, 1662, 1692
TseFI GTSAC 4 cut(s) 298, 994, 1653, 1683
TseI GCWGC 2 cut(s) 331, 1511
Tsp45I GTSAC 4 cut(s) 298, 994, 1653, 1683
TspDTI ATGAA 1 cut(s) 345
TspRI CASTG 7 cut(s) 415, 421, 634, 946, 1143, 1662, 1692
Van91I CCANNNNNTGG 2 cut(s) 1232, 1460
VspI ATTAAT 1 cut(s) 876
XapI RAATTY 3 cut(s) 615, 828, 1068
XbaI TCTAGA 1 cut(s) 1492
XceI RCATGY 5 cut(s) 118, 366, 752, 807, 871
XcmI CCANNNNNNNNNTGG 1 cut(s) 1040
XspI CTAG 6 cut(s) 170, 222, 653, 729, 1248, 1493
ZraI GACGTC 1 cut(s) 1134
ZrmI AGTACT 2 cut(s) 906, 950
Zsp2I ATGCAT 2 cut(s) 461, 1370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.