Rroxscaffold_5G00335890
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0004526
Physical Location & Seq
Forward (+)
3455686 .. 3463877
8192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00335890.1

Sequence Viewer

Length: 1287 bp
ATGCGAAGAAACTCTGGTTTCGAGAAGGAGGGATTGAAGAGAGGCATGTGGTCTGCTCGTGAAGACCAGGTTCTCAAGGACTACGTCAAAAAACACGGTCCAGGCAAATGGGGAAAAACAGCAAGAGAGACTGGCAAGTTCATTGTTTTCTTCATTTTTACTCTCGACATACAGCAGTGTGCTTCACTAATAATTGCAATCGCCATTGTTTCTGAAATTAATCAATTATTTCAGTTAATTAACAACGACCCTCTGTGGTCATTGATAGCAGGAAGGATACCGGGCCGAACTGAAAATGAGATAAAGAACTACTGGAACTCCACTCTAAGGAAGAAGCTGGCAGAGGAGAACTTGCCATCCCCCGTTGAGGACGATGGTCATCAATATTTGACCAAATGCGATGAAGTTCATGGAGGAGTAGGAGGAGGAGGATTGATGTGTTTTGCCAGTAATATTGTTAATGTAGAAGAAGATCATCAGCATCGTTGTCTTGGCGGTACTAGTACCGATACTACTACACGGAGTCTCGGAGTGGAACTCGGAATCGGAGGCGGGGCAAACAATGATATTCAACCAACTGGGTATGATCTCAATTATAACGCTATGACCTGGAACGATTCGATAATGGATCTAAGTGGAGGCCAACTAGACATATCTGAATTTCTCCAAACTGACTTTTTGAATTTTTGGGAAGAAACAGATAGGTTCATGAATTTTGAAGTGGGAGGTTGCAGCACCATTAATCATGAGTTGCCAAATAATTGGGATGGTGGGCCCCGCAGGGCCACCTCGGATTTCGGTGAAATCCGGAGTGGGTCCCGTCACTTTCTTTCTTTAAAAAACTCTCCGACTTGCTCCTATGTAGAGGCTAAGATTTCAAACTTCTTTGAGAACTTGGTTAGAAAACGTAATCTATGTCACCTATTACCGCATGAAGGAGATCATTGTCCCTTAAACACCGGACCTACAAAGCCAATAGAGAAGAGGCTTGATATCGACGTTCATCCTTGGGTTTCTCTACAAGCAAATTTATGGATGGAGCTTTCCGCTTCCAAAGTATTCGACTCGGTATTGCCTCCTATAAGCCGAGCACAATTTGGTTCGAATGACCATAATGGACGCAAGCCAATCGGAGGAAACCGCGATTCACCGAGATCCGACATCCTCATCCGCACCGCCGGCGATTCACCACCACCGCAAAGAATCGGCTCCGCTCGCCTCGGACAAGCACCTCCACATCACCGTAACGCGCAAACTTTCGGGACGGGGCAGGGAGTAGTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

428

Amino Acids

47.58

Weight (kDa)

6.08

Isoelectric Point (pI)

40.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 76 - 108 1.7e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 597
AccBSI CCGCTC 1 cut(s) 1214
AccII CGCG 2 cut(s) 1143, 1250
AccIII TCCGGA 1 cut(s) 807
AclWI GGATC 2 cut(s) 636, 1149
AcsI RAATTY 4 cut(s) 659, 682, 712, 1027
AfaI GTAC 2 cut(s) 499, 505
AfiI CCNNNNNNNGG 4 cut(s) 327, 367, 935, 1133
AgsI TTSAA 5 cut(s) 37, 572, 682, 719, 879
AhlI ACTAGT 1 cut(s) 500
AjnI CCWGG 3 cut(s) 66, 100, 608
AloI GAACNNNNNNTCC 2 cut(s) 341, 373
AluBI AGCT 2 cut(s) 337, 1042
AluI AGCT 2 cut(s) 337, 1042
Alw21I GWGCWC 1 cut(s) 1093
Alw26I GTCTC 2 cut(s) 122, 530
AlwI GGATC 2 cut(s) 636, 1149
Aor13HI TCCGGA 1 cut(s) 807
AoxI GGCC 4 cut(s) 283, 640, 773, 783
ApaI GGGCCC 1 cut(s) 777
ApeKI GCWGC 1 cut(s) 732
ApoI RAATTY 4 cut(s) 659, 682, 712, 1027
AseI ATTAAT 2 cut(s) 219, 741
AspLEI GCGC 1 cut(s) 1252
AspS9I GGNCC 7 cut(s) 98, 283, 773, 774, 783, 816, 962
AsuC2I CCSGG 1 cut(s) 282
AsuHPI GGTGA 5 cut(s) 812, 911, 1140, 1179, 1232
AsuII TTCGAA 1 cut(s) 1103
AvaII GGWCC 3 cut(s) 98, 816, 962
BaeGI GKGCMC 1 cut(s) 777
BanII GRGCYC 1 cut(s) 777
BauI CACGAG 1 cut(s) 57
BbsI GAAGAC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 1093
BbvI GCAGC 1 cut(s) 744
BccI CCATC 4 cut(s) 364, 368, 761, 1030
BcgI CGANNNNNNTGC 2 cut(s) 1111, 1145
BciT130I CCWGG 3 cut(s) 68, 102, 610
BciVI GTATCC 1 cut(s) 270
BcnI CCSGG 1 cut(s) 282
BcoDI GTCTC 2 cut(s) 122, 530
BcuI ACTAGT 1 cut(s) 500
BfaI CTAG 2 cut(s) 501, 647
BfuI GTATCC 1 cut(s) 270
BisI GCNGC 1 cut(s) 733
BlsI GCNGC 1 cut(s) 734
Bme1390I CCNGG 4 cut(s) 68, 102, 282, 610
Bme18I GGWCC 3 cut(s) 98, 816, 962
BmgT120I GGNCC 7 cut(s) 98, 283, 773, 774, 783, 816, 962
BmiI GGNNCC 5 cut(s) 775, 776, 817, 818, 1210
BmrFI CCNGG 4 cut(s) 68, 102, 282, 610
BmrI ACTGGG 1 cut(s) 588
BmsI GCATC 1 cut(s) 490
BmuI ACTGGG 1 cut(s) 588
BoxI GACNNNNGTC 1 cut(s) 375
BpiI GAAGAC 1 cut(s) 69
BplI GAGNNNNNCTC 2 cut(s) 522, 554
Bpu14I TTCGAA 1 cut(s) 1103
BpuEI CTTGAG 1 cut(s) 59
BpuMI CCSGG 1 cut(s) 282
BsaBI GATNNNNATC 1 cut(s) 378
BsaJI CCNNGG 3 cut(s) 789, 1007, 1219
BsaWI WCCGGW 2 cut(s) 807, 959
BsaXI ACNNNNNCTCC 2 cut(s) 302, 332
Bsc4I CCNNNNNNNGG 4 cut(s) 327, 367, 935, 1133
Bse118I RCCGGY 1 cut(s) 1178
Bse1I ACTGG 4 cut(s) 136, 317, 447, 583
Bse8I GATNNNNATC 1 cut(s) 378
BseAI TCCGGA 1 cut(s) 807
BseBI CCWGG 3 cut(s) 68, 102, 610
BseDI CCNNGG 3 cut(s) 789, 1007, 1219
BseGI GGATG 6 cut(s) 356, 772, 1003, 1041, 1161, 1167
BseJI GATNNNNATC 1 cut(s) 378
BseLI CCNNNNNNNGG 4 cut(s) 327, 367, 935, 1133
BseNI ACTGG 4 cut(s) 136, 317, 447, 583
BseRI GAGGAG 4 cut(s) 359, 429, 438, 441
BseSI GKGCMC 1 cut(s) 777
BseXI GCAGC 1 cut(s) 744
Bsh1236I CGCG 2 cut(s) 1143, 1250
BshFI GGCC 4 cut(s) 285, 642, 775, 785
BsiHKAI GWGCWC 1 cut(s) 1093
BsiSI CCGG 4 cut(s) 281, 808, 960, 1179
BslFI GGGAC 3 cut(s) 802, 933, 1276
BslI CCNNNNNNNGG 4 cut(s) 327, 367, 935, 1133
BsmAI GTCTC 2 cut(s) 122, 530
BsmFI GGGAC 3 cut(s) 802, 933, 1276
BsnI GGCC 4 cut(s) 285, 642, 775, 785
Bsp119I TTCGAA 1 cut(s) 1103
Bsp120I GGGCCC 1 cut(s) 773
Bsp1286I GDGCHC 2 cut(s) 777, 1093
Bsp13I TCCGGA 1 cut(s) 807
Bsp143I GATC 5 cut(s) 472, 586, 628, 940, 1154
BspANI GGCC 4 cut(s) 285, 642, 775, 785
BspEI TCCGGA 1 cut(s) 807
BspFNI CGCG 2 cut(s) 1143, 1250
BspHI TCATGA 2 cut(s) 708, 745
BspLI GGNNCC 5 cut(s) 775, 776, 817, 818, 1210
BspPI GGATC 2 cut(s) 636, 1149
BspT104I TTCGAA 1 cut(s) 1103
BsrBI CCGCTC 1 cut(s) 1214
BsrFI RCCGGY 1 cut(s) 1178
BsrI ACTGG 4 cut(s) 136, 317, 447, 583
BssAI RCCGGY 1 cut(s) 1178
BssECI CCNNGG 3 cut(s) 789, 1007, 1219
BssMI GATC 5 cut(s) 472, 586, 628, 940, 1154
BssSI CACGAG 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 1007
Bst2BI CACGAG 1 cut(s) 57
Bst2UI CCWGG 3 cut(s) 68, 102, 610
Bst4CI ACNGT 2 cut(s) 98, 1244
Bst6I CTCTTC 2 cut(s) 32, 977
BstBI TTCGAA 1 cut(s) 1103
BstC8I GCNNGC 4 cut(s) 339, 1124, 1180, 1216
BstDEI CTNAG 3 cut(s) 326, 632, 870
BstF5I GGATG 6 cut(s) 356, 772, 1003, 1041, 1161, 1167
BstFNI CGCG 2 cut(s) 1143, 1250
BstHHI GCGC 1 cut(s) 1252
BstKTI GATC 5 cut(s) 475, 589, 631, 943, 1157
BstMAI GTCTC 2 cut(s) 122, 530
BstMBI GATC 5 cut(s) 472, 586, 628, 940, 1154
BstMWI GCNNNNNNNGC 2 cut(s) 1179, 1215
BstNI CCWGG 3 cut(s) 68, 102, 610
BstNSI RCATGY 1 cut(s) 49
BstPAI GACNNNNGTC 1 cut(s) 375
BstSCI CCNGG 4 cut(s) 66, 100, 280, 608
BstSLI GKGCMC 1 cut(s) 777
BstUI CGCG 2 cut(s) 1143, 1250
BstV1I GCAGC 1 cut(s) 744
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 2 cut(s) 628, 1154
BstXI CCANNNNNNTGG 2 cut(s) 108, 762
BstYI RGATCY 2 cut(s) 628, 1154
BsuI GTATCC 1 cut(s) 270
BsuRI GGCC 4 cut(s) 285, 642, 775, 785
BtgZI GCGATG 1 cut(s) 414
BtsCI GGATG 6 cut(s) 356, 772, 1003, 1041, 1161, 1167
BtsI GCAGTG 1 cut(s) 182
BtsIMutI CAGTG 1 cut(s) 182
Cac8I GCNNGC 4 cut(s) 339, 1124, 1180, 1216
CciI TCATGA 2 cut(s) 708, 745
CfoI GCGC 1 cut(s) 1252
Cfr10I RCCGGY 1 cut(s) 1178
Cfr13I GGNCC 7 cut(s) 98, 283, 773, 774, 783, 816, 962
CseI GACGC 1 cut(s) 1128
CsiI ACCWGGT 1 cut(s) 66
Csp6I GTAC 2 cut(s) 498, 504
CviAII CATG 5 cut(s) 46, 410, 709, 746, 932
CviQI GTAC 2 cut(s) 498, 504
DdeI CTNAG 3 cut(s) 326, 632, 870
DpnI GATC 5 cut(s) 474, 588, 630, 942, 1156
DpnII GATC 5 cut(s) 472, 586, 628, 940, 1154
DraI TTTAAA 1 cut(s) 837
Eam1104I CTCTTC 2 cut(s) 32, 977
EarI CTCTTC 2 cut(s) 32, 977
Eco130I CCWWGG 1 cut(s) 1007
Eco24I GRGCYC 1 cut(s) 777
Eco32I GATATC 1 cut(s) 994
Eco47I GGWCC 3 cut(s) 98, 816, 962
EcoO109I RGGNCCY 2 cut(s) 774, 816
EcoRII CCWGG 3 cut(s) 66, 100, 608
EcoRV GATATC 1 cut(s) 994
EcoT14I CCWWGG 1 cut(s) 1007
EcoT38I GRGCYC 1 cut(s) 777
ErhI CCWWGG 1 cut(s) 1007
FaeI CATG 5 cut(s) 49, 413, 712, 749, 935
FaqI GGGAC 3 cut(s) 802, 933, 1276
FatI CATG 5 cut(s) 45, 409, 708, 745, 931
FauI CCCGC 2 cut(s) 545, 785
Fnu4HI GCNGC 1 cut(s) 733
FokI GGATG 6 cut(s) 343, 779, 990, 1048, 1148, 1154
FriOI GRGCYC 1 cut(s) 777
Fsp4HI GCNGC 1 cut(s) 733
FspBI CTAG 2 cut(s) 501, 647
GlaI GCGC 1 cut(s) 1251
GluI GCNGC 1 cut(s) 733
HaeIII GGCC 4 cut(s) 285, 642, 775, 785
HapII CCGG 4 cut(s) 281, 808, 960, 1179
HgaI GACGC 1 cut(s) 1128
HhaI GCGC 1 cut(s) 1252
Hin1II CATG 5 cut(s) 49, 413, 712, 749, 935
Hin6I GCGC 1 cut(s) 1250
HinP1I GCGC 1 cut(s) 1250
HinfI GANTC 7 cut(s) 523, 543, 617, 1064, 1145, 1184, 1203
HpaII CCGG 4 cut(s) 281, 808, 960, 1179
HphI GGTGA 5 cut(s) 812, 911, 1140, 1179, 1232
Hpy188III TCNNGA 7 cut(s) 22, 59, 164, 709, 746, 808, 1261
Hpy99I CGWCG 1 cut(s) 1001
HpyAV CCTTC 3 cut(s) 19, 267, 929
HpyCH4III ACNGT 2 cut(s) 98, 1244
HpyCH4IV ACGT 3 cut(s) 84, 907, 999
HpyCH4V TGCA 2 cut(s) 197, 732
HpyF10VI GCNNNNNNNGC 2 cut(s) 1179, 1215
HpyF3I CTNAG 3 cut(s) 326, 632, 870
HpySE526I ACGT 3 cut(s) 84, 907, 999
Hsp92II CATG 5 cut(s) 49, 413, 712, 749, 935
HspAI GCGC 1 cut(s) 1250
KflI GGGWCCC 1 cut(s) 816
Kpn2I TCCGGA 1 cut(s) 807
KroI GCCGGC 1 cut(s) 1178
KroNI GCCGGC 1 cut(s) 1180
Kzo9I GATC 5 cut(s) 472, 586, 628, 940, 1154
LmnI GCTCC 3 cut(s) 860, 1039, 1214
Lsp1109I GCAGC 1 cut(s) 744
LweI GCATC 1 cut(s) 490
MabI ACCWGGT 1 cut(s) 66
MaeI CTAG 2 cut(s) 501, 647
MaeII ACGT 3 cut(s) 84, 907, 999
MaeIII GTNAC 3 cut(s) 821, 917, 1244
MalI GATC 5 cut(s) 474, 588, 630, 942, 1156
MbiI CCGCTC 1 cut(s) 1214
MboI GATC 5 cut(s) 472, 586, 628, 940, 1154
MboII GAAGA 9 cut(s) 18, 49, 74, 142, 343, 479, 482, 704, 994
MflI RGATCY 2 cut(s) 628, 1154
MhlI GDGCHC 2 cut(s) 777, 1093
MlyI GAGTC 2 cut(s) 532, 1058
MmeI TCCRAC 2 cut(s) 872, 1182
MreI CGCCGGCG 1 cut(s) 1178
MroI TCCGGA 1 cut(s) 807
MroNI GCCGGC 1 cut(s) 1178
MseI TTAA 7 cut(s) 219, 236, 240, 459, 741, 836, 953
MspI CCGG 4 cut(s) 281, 808, 960, 1179
MspR9I CCNGG 4 cut(s) 68, 102, 282, 610
MvaI CCWGG 3 cut(s) 68, 102, 610
MvnI CGCG 2 cut(s) 1143, 1250
MwoI GCNNNNNNNGC 2 cut(s) 1179, 1215
NaeI GCCGGC 1 cut(s) 1180
NciI CCSGG 1 cut(s) 282
NdeII GATC 5 cut(s) 472, 586, 628, 940, 1154
NgoMIV GCCGGC 1 cut(s) 1178
NlaIII CATG 5 cut(s) 49, 413, 712, 749, 935
NlaIV GGNNCC 5 cut(s) 775, 776, 817, 818, 1210
NmeAIII GCCGAG 1 cut(s) 1112
NmuCI GTSAC 2 cut(s) 821, 917
NspI RCATGY 1 cut(s) 49
NspV TTCGAA 1 cut(s) 1103
PacI TTAATTAA 1 cut(s) 240
PagI TCATGA 2 cut(s) 708, 745
PdiI GCCGGC 1 cut(s) 1180
PfeI GAWTC 5 cut(s) 543, 617, 1145, 1184, 1203
PflFI GACNNNGTC 1 cut(s) 83
PkrI GCNGC 1 cut(s) 734
PleI GAGTC 2 cut(s) 531, 1058
PpsI GAGTC 2 cut(s) 531, 1058
PpuMI RGGWCCY 1 cut(s) 816
PshAI GACNNNNGTC 1 cut(s) 375
PshBI ATTAAT 2 cut(s) 219, 741
PsiI TTATAA 1 cut(s) 597
Psp5II RGGWCCY 1 cut(s) 816
Psp6I CCWGG 3 cut(s) 66, 100, 608
PspGI CCWGG 3 cut(s) 66, 100, 608
PspN4I GGNNCC 5 cut(s) 775, 776, 817, 818, 1210
PspOMI GGGCCC 1 cut(s) 773
PspPI GGNCC 7 cut(s) 98, 283, 773, 774, 783, 816, 962
PspPPI RGGWCCY 1 cut(s) 816
PsuI RGATCY 2 cut(s) 628, 1154
PsyI GACNNNGTC 1 cut(s) 83
RsaI GTAC 2 cut(s) 499, 505
RsaNI GTAC 2 cut(s) 498, 504
SaqAI TTAA 7 cut(s) 219, 236, 240, 459, 741, 836, 953
SatI GCNGC 1 cut(s) 733
Sau3AI GATC 5 cut(s) 472, 586, 628, 940, 1154
Sau96I GGNCC 7 cut(s) 98, 283, 773, 774, 783, 816, 962
SchI GAGTC 2 cut(s) 532, 1058
ScrFI CCNGG 4 cut(s) 68, 102, 282, 610
SduI GDGCHC 2 cut(s) 777, 1093
SexAI ACCWGGT 1 cut(s) 66
SfaNI GCATC 1 cut(s) 490
SfuI TTCGAA 1 cut(s) 1103
SgrAI CRCCGGYG 1 cut(s) 1178
SinI GGWCC 3 cut(s) 98, 816, 962
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
SpeI ACTAGT 1 cut(s) 500
SspI AATATT 2 cut(s) 386, 454
SspMI CTAG 2 cut(s) 501, 647
StyD4I CCNGG 4 cut(s) 66, 100, 280, 608
StyI CCWWGG 1 cut(s) 1007
TaaI ACNGT 2 cut(s) 98, 1244
TaiI ACGT 3 cut(s) 87, 910, 1002
TaqI TCGA 6 cut(s) 21, 165, 620, 996, 1062, 1103
TfiI GAWTC 5 cut(s) 543, 617, 1145, 1184, 1203
Tru1I TTAA 7 cut(s) 219, 236, 240, 459, 741, 836, 953
Tru9I TTAA 7 cut(s) 219, 236, 240, 459, 741, 836, 953
TscAI CASTG 1 cut(s) 182
TseFI GTSAC 2 cut(s) 821, 917
TseI GCWGC 1 cut(s) 732
Tsp45I GTSAC 2 cut(s) 821, 917
TspDTI ATGAA 8 cut(s) 130, 142, 398, 417, 697, 725, 948, 992
TspGWI ACGGA 1 cut(s) 535
TspRI CASTG 1 cut(s) 182
Tth111I GACNNNGTC 1 cut(s) 83
VpaK11BI GGWCC 3 cut(s) 98, 816, 962
VspI ATTAAT 2 cut(s) 219, 741
XapI RAATTY 4 cut(s) 659, 682, 712, 1027
XceI RCATGY 1 cut(s) 49
XspI CTAG 2 cut(s) 501, 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.