Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004526

Physical Location & Seq

Genomic Coordinates Forward (+)

14094947 .. 14096216

Gene Structure 1270 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29978

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGGAAGATACGCTGGTTTCGAAAAGGGGGGATTGAAGAAAGGTACGTGGTCTGCTTGCGAAGACCAGGTTCTCAAGGATTACGTCAAAAAGCACGGTTTGAAGAGATGTGGGAAGAGTGTGAGACTGAGGTGGTTGAATTACCTGAGGCCCGGTATCAAGAGAGGCAAGATTACAGAAGATGAAAAAGACCTTATCATCAGGATGCACAAACTCTTAGGCAACAGGTGGTCATTGATAGCCGGAAGGATTCCGGGCCGAACTGACAATGAAATAAAGAACTACTGGAATTCCATTCTAAGGAAGAACGTGGGAGAAGAAAAAGAGAGAGAATCAGAAGTGTCGAGAAACGAGATAATCAAGGAGAACTTGCCATCCCTCGCTGAGGACGATGGTCATCCACATTTGACCAAATGCGATGAAGTTCTTGGAGGAGGAGGAGGATTGGATTGTTTTGCCAGTGATGTTAATGTAGAAGAAGATCACCGGCATCGTTGTCTTGGCCGTACTAGTACCGATACTACTACACTGAGTCCCGGAGTGGGAGTCGAAATCGGAGGAGGGGCAAACCAAGATATTCAACCAACAGGGGATGATCTCAATTATAACGCTATAACCTGGAAAGATTCGATAATGGATCTGAATGGAGGCCAACTCGACATATCTGAATTCCTCCAAAGTGATGACTTTTCGACGTTTTGGGATTCAGATAGGCTCATGAATTTTGAAATCGGAGGTTGCAGCACCATGAATTATGATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

254

Amino Acids

28.53

Weight (kDa)

5.48

Isoelectric Point (pI)

45.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	55 - 100	1.1e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	59 - 104	1e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004526)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31070 FvH4_2g31070 FvH4_4g02400
rosa_chinensis	RchiOBHm_Chr4g0389841 RchiOBHm_Chr5g0019651 RchiOBHm_Chr6g0311731
rosa_laevigata	RLG00000009947 RLG00000010379
rosa_multiflora	Rmu_co8139852.1_g000001 Rmu_sc0002702.1_g000022 Rmu_sc0002888.1_g000030 Rmu_sc0030932.1_g000007
rosa_roxburghii	Rroxscaffold_1G00058440 Rroxscaffold_5G00335890 Rroxscaffold_5G00335920 Rroxscaffold_7G00157360
rosa_rugosa	Rorug03G0325700 Rorug03G0326000 Rorug03G0326100 Rorug03G0326200 Rorug05G0052400
rosa_samantha	Rh4AG030400 Rh4BG023600 Rh4CG033000 Rh5AG143000 Rh5BG141600 Rh5CG153600 Rh6BG517200 Rh6DG508800
rosa_wichuraiana	Rw4G002290 Rw5G012670 Rw6G044060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	606
AclWI	GGATC	1 cut(s)	645
AcoI	YGGCCR	1 cut(s)	502
AcsI	RAATTY	3 cut(s)	289, 668, 721
AfaI	GTAC	3 cut(s)	46, 508, 514
AfiI	CCNNNNNNNGG	3 cut(s)	300, 385, 542
AgsI	TTSAA	5 cut(s)	37, 103, 139, 581, 728
AhlI	ACTAGT	1 cut(s)	509
AjnI	CCWGG	2 cut(s)	66, 617
AloI	GAACNNNNNNTCC	2 cut(s)	359, 391
Alw26I	GTCTC	1 cut(s)	118
AlwI	GGATC	1 cut(s)	645
AoxI	GGCC	4 cut(s)	149, 256, 502, 649
ApeKI	GCWGC	1 cut(s)	741
ApoI	RAATTY	3 cut(s)	289, 668, 721
AspS9I	GGNCC	2 cut(s)	150, 256
AsuC2I	CCSGG	3 cut(s)	153, 255, 537
AsuHPI	GGTGA	1 cut(s)	476
AsuII	TTCGAA	1 cut(s)	21
AxyI	CCTNAGG	1 cut(s)	146
BaeI	ACNNNNGTAYC	1 cut(s)	34
BbsI	GAAGAC	1 cut(s)	69
BbvCI	CCTCAGC	1 cut(s)	384
BbvI	GCAGC	1 cut(s)	753
BccI	CCATC	2 cut(s)	382, 386
BceAI	ACGGC	1 cut(s)	489
BciT130I	CCWGG	2 cut(s)	68, 619
BcnI	CCSGG	3 cut(s)	153, 255, 537
BcoDI	GTCTC	1 cut(s)	118
BcuI	ACTAGT	1 cut(s)	509
BfaI	CTAG	1 cut(s)	510
BisI	GCNGC	1 cut(s)	742
BlsI	GCNGC	1 cut(s)	743
Bme1390I	CCNGG	5 cut(s)	68, 153, 255, 537, 619
BmgT120I	GGNCC	2 cut(s)	150, 256
BmrFI	CCNGG	5 cut(s)	68, 153, 255, 537, 619
BmsI	GCATC	2 cut(s)	195, 499
BoxI	GACNNNNGTC	1 cut(s)	393
BpiI	GAAGAC	1 cut(s)	69
BplI	GAGNNNNNCTC	2 cut(s)	639, 671
Bpu10I	CCTNAGC	1 cut(s)	384
Bpu14I	TTCGAA	1 cut(s)	21
BpuEI	CTTGAG	1 cut(s)	59
BpuMI	CCSGG	3 cut(s)	153, 255, 537
BsaAI	YACGTR	1 cut(s)	48
BsaBI	GATNNNNATC	1 cut(s)	396
BsaXI	ACNNNNNCTCC	2 cut(s)	531, 561
Bsc4I	CCNNNNNNNGG	3 cut(s)	300, 385, 542
Bse118I	RCCGGY	1 cut(s)	486
Bse1I	ACTGG	2 cut(s)	290, 459
Bse21I	CCTNAGG	1 cut(s)	146
Bse8I	GATNNNNATC	1 cut(s)	396
BseBI	CCWGG	2 cut(s)	68, 619
BseGI	GGATG	4 cut(s)	210, 374, 397, 598
BseJI	GATNNNNATC	1 cut(s)	396
BseLI	CCNNNNNNNGG	3 cut(s)	300, 385, 542
BseMII	CTCAG	4 cut(s)	119, 137, 375, 521
BseNI	ACTGG	2 cut(s)	290, 459
BseRI	GAGGAG	4 cut(s)	447, 450, 453, 573
BseXI	GCAGC	1 cut(s)	753
BshFI	GGCC	4 cut(s)	151, 258, 504, 651
BsiSI	CCGG	5 cut(s)	153, 243, 254, 487, 537
BslFI	GGGAC	1 cut(s)	519
BslI	CCNNNNNNNGG	3 cut(s)	300, 385, 542
BsmAI	GTCTC	1 cut(s)	118
BsmFI	GGGAC	1 cut(s)	519
BsnI	GGCC	4 cut(s)	151, 258, 504, 651
Bsp119I	TTCGAA	1 cut(s)	21
Bsp143I	GATC	3 cut(s)	481, 595, 637
BspANI	GGCC	4 cut(s)	151, 258, 504, 651
BspCNI	CTCAG	4 cut(s)	120, 138, 376, 522
BspHI	TCATGA	1 cut(s)	717
BspPI	GGATC	1 cut(s)	645
BspT104I	TTCGAA	1 cut(s)	21
BsrFI	RCCGGY	1 cut(s)	486
BsrI	ACTGG	2 cut(s)	290, 459
BssAI	RCCGGY	1 cut(s)	486
BssMI	GATC	3 cut(s)	481, 595, 637
Bst2UI	CCWGG	2 cut(s)	68, 619
Bst4CI	ACNGT	1 cut(s)	98
Bst6I	CTCTTC	2 cut(s)	98, 110
BstBAI	YACGTR	1 cut(s)	48
BstBI	TTCGAA	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	58
BstDEI	CTNAG	6 cut(s)	128, 146, 217, 299, 384, 530
BstENI	CCTNNNNNAGG	1 cut(s)	383
BstF5I	GGATG	4 cut(s)	210, 374, 397, 598
BstKTI	GATC	3 cut(s)	484, 598, 640
BstMAI	GTCTC	1 cut(s)	118
BstMBI	GATC	3 cut(s)	481, 595, 637
BstNI	CCWGG	2 cut(s)	68, 619
BstPAI	GACNNNNGTC	1 cut(s)	393
BstSCI	CCNGG	5 cut(s)	66, 151, 253, 535, 617
BstV1I	GCAGC	1 cut(s)	753
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	637
Bsu36I	CCTNAGG	1 cut(s)	146
BsuRI	GGCC	4 cut(s)	151, 258, 504, 651
BtgZI	GCGATG	1 cut(s)	432
BtsCI	GGATG	4 cut(s)	210, 374, 397, 598
BtsIMutI	CAGTG	2 cut(s)	466, 527
Cac8I	GCNNGC	1 cut(s)	58
CciI	TCATGA	1 cut(s)	717
Cfr10I	RCCGGY	1 cut(s)	486
Cfr13I	GGNCC	2 cut(s)	150, 256
CsiI	ACCWGGT	1 cut(s)	66
Csp6I	GTAC	3 cut(s)	45, 507, 513
CviAII	CATG	2 cut(s)	718, 748
CviJI	RGCY	6 cut(s)	151, 242, 258, 504, 651, 715
CviKI_1	RGCY	6 cut(s)	151, 242, 258, 504, 651, 715
CviQI	GTAC	3 cut(s)	45, 507, 513
DdeI	CTNAG	6 cut(s)	128, 146, 217, 299, 384, 530
DpnI	GATC	3 cut(s)	483, 597, 639
DpnII	GATC	3 cut(s)	481, 595, 637
EaeI	YGGCCR	1 cut(s)	502
Eam1104I	CTCTTC	2 cut(s)	98, 110
EarI	CTCTTC	2 cut(s)	98, 110
Eco81I	CCTNAGG	1 cut(s)	146
EcoNI	CCTNNNNNAGG	1 cut(s)	383
EcoRI	GAATTC	2 cut(s)	289, 668
EcoRII	CCWGG	2 cut(s)	66, 617
FaeI	CATG	2 cut(s)	721, 751
FaiI	YATR	7 cut(s)	606, 614, 662, 719, 749, 756, 763
FalI	AAGNNNNNCTT	2 cut(s)	353, 385
FaqI	GGGAC	1 cut(s)	519
FatI	CATG	2 cut(s)	717, 747
Fnu4HI	GCNGC	1 cut(s)	742
FokI	GGATG	4 cut(s)	217, 361, 384, 605
Fsp4HI	GCNGC	1 cut(s)	742
FspBI	CTAG	1 cut(s)	510
GluI	GCNGC	1 cut(s)	742
HaeIII	GGCC	4 cut(s)	151, 258, 504, 651
HapII	CCGG	5 cut(s)	153, 243, 254, 487, 537
Hin1II	CATG	2 cut(s)	721, 751
HinfI	GANTC	6 cut(s)	250, 332, 532, 546, 626, 704
HpaII	CCGG	5 cut(s)	153, 243, 254, 487, 537
HphI	GGTGA	1 cut(s)	476
Hpy188I	TCNGA	6 cut(s)	337, 557, 642, 667, 709, 734
Hpy188III	TCNNGA	4 cut(s)	160, 202, 345, 718
Hpy99I	CGWCG	1 cut(s)	697
HpyAV	CCTTC	1 cut(s)	240
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4IV	ACGT	4 cut(s)	47, 84, 309, 695
HpyCH4V	TGCA	2 cut(s)	208, 741
HpyF3I	CTNAG	6 cut(s)	128, 146, 217, 299, 384, 530
HpySE526I	ACGT	4 cut(s)	47, 84, 309, 695
Hsp92II	CATG	2 cut(s)	721, 751
Kzo9I	GATC	3 cut(s)	481, 595, 637
Lsp1109I	GCAGC	1 cut(s)	753
LweI	GCATC	2 cut(s)	195, 499
MabI	ACCWGGT	1 cut(s)	66
MaeI	CTAG	1 cut(s)	510
MaeII	ACGT	4 cut(s)	47, 84, 309, 695
MalI	GATC	3 cut(s)	483, 597, 639
MboI	GATC	3 cut(s)	481, 595, 637
MflI	RGATCY	1 cut(s)	637
MluCI	AATT	6 cut(s)	139, 289, 601, 668, 721, 751
MlyI	GAGTC	2 cut(s)	541, 555
MseI	TTAA	1 cut(s)	468
MslI	CAYNNNNRTG	1 cut(s)	203
MspI	CCGG	5 cut(s)	153, 243, 254, 487, 537
MspR9I	CCNGG	5 cut(s)	68, 153, 255, 537, 619
MvaI	CCWGG	2 cut(s)	68, 619
NciI	CCSGG	3 cut(s)	153, 255, 537
NdeII	GATC	3 cut(s)	481, 595, 637
NlaIII	CATG	2 cut(s)	721, 751
NspV	TTCGAA	1 cut(s)	21
PagI	TCATGA	1 cut(s)	717
PcsI	WCGNNNNNNNCGW	2 cut(s)	18, 387
PfeI	GAWTC	4 cut(s)	250, 332, 626, 704
PfoI	TCCNGGA	1 cut(s)	535
PkrI	GCNGC	1 cut(s)	743
PleI	GAGTC	2 cut(s)	540, 554
PpsI	GAGTC	2 cut(s)	540, 554
Ppu21I	YACGTR	1 cut(s)	48
PshAI	GACNNNNGTC	1 cut(s)	393
PsiI	TTATAA	1 cut(s)	606
Psp6I	CCWGG	2 cut(s)	66, 617
PspGI	CCWGG	2 cut(s)	66, 617
PspPI	GGNCC	2 cut(s)	150, 256
PsuI	RGATCY	1 cut(s)	637
RsaI	GTAC	3 cut(s)	46, 508, 514
RsaNI	GTAC	3 cut(s)	45, 507, 513
RseI	CAYNNNNRTG	1 cut(s)	203
SaqAI	TTAA	1 cut(s)	468
SatI	GCNGC	1 cut(s)	742
Sau3AI	GATC	3 cut(s)	481, 595, 637
Sau96I	GGNCC	2 cut(s)	150, 256
SchI	GAGTC	2 cut(s)	541, 555
ScrFI	CCNGG	5 cut(s)	68, 153, 255, 537, 619
SexAI	ACCWGGT	1 cut(s)	66
SfaNI	GCATC	2 cut(s)	195, 499
SfuI	TTCGAA	1 cut(s)	21
SmiMI	CAYNNNNRTG	1 cut(s)	203
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
SpeI	ACTAGT	1 cut(s)	509
Sse9I	AATT	6 cut(s)	139, 289, 601, 668, 721, 751
SspMI	CTAG	1 cut(s)	510
StyD4I	CCNGG	5 cut(s)	66, 151, 253, 535, 617
TaaI	ACNGT	1 cut(s)	98
TaiI	ACGT	4 cut(s)	50, 87, 312, 698
TaqI	TCGA	6 cut(s)	21, 344, 549, 629, 657, 692
TasI	AATT	6 cut(s)	139, 289, 601, 668, 721, 751
TfiI	GAWTC	4 cut(s)	250, 332, 626, 704
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TscAI	CASTG	2 cut(s)	466, 534
TseI	GCWGC	1 cut(s)	741
TspDTI	ATGAA	5 cut(s)	198, 285, 435, 734, 764
TspRI	CASTG	2 cut(s)	466, 534
XagI	CCTNNNNNAGG	1 cut(s)	383
XapI	RAATTY	3 cut(s)	289, 668, 721
XspI	CTAG	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.