Rroxscaffold_5G00335920
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0004526
Physical Location & Seq
Forward (+)
3529012 .. 3530489
1478 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00335920.1

Sequence Viewer

Length: 750 bp
ATGGGAAGAAACTCAGGTTTCGAAAAGGAGGGATTGAAGAAAGGTATGTGGTCTGCTCGCGAAGACCAGGTTCTCAAGGACTACGTCAAAAAGCAGGGTCCAGGCAACTGGGGAAAAACAGCAAGGGAGACTGGCAAGTCTGAAGAGATGTGGGAAGAGTGTGAGACTGAGATGGTTGAATTATCTGAGGCCCGGTGGTCATTGATAGCAGGAAGGATTCCGGGCCGAACAGACAATGAAATAAAAAACTACTGGAACTCCACTCTACGGAAGAAGCTGGCAGAACAGAAAGAAAAGGAATCAGAAGTGTCGAGAAACGAGATGATCAAGGAGAACTTGCCATCCACCGTTGAGGACGATGGTCATCAACATTTGACCAAATGCGATGTAGTTCTTGGAGGAGGAGGAGGATTGATGTGTTTTGCCAATAATGCTAATGTAGAAGAAGATCATCAGCGTCGTTGTCTTGGCGGTACTAGTACCAATACTACTATACTGAGTCCAAGAGTGGGAGTCGGAACCGGAGGCGGGGGAAACAATAATATCGAACCAACTGGGGATGATCTCCATTATAATGCTATGACCTGGAACGATTCGATAATGGATTTGAATGGAGGCCAACTCTACTTGTCTGAATTCCTCCAAACTGACTTTTCGAAGTTTTGGGAAGAAACAGATAGGTTCATGAATTTTGAAGTCGGAGGTTGCAGCACCATTAATCATGAGTTGCCTAATAATTGGGATGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

249

Amino Acids

27.94

Weight (kDa)

4.88

Isoelectric Point (pI)

41.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 59 - 88 1.5e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 573
AasI GACNNNNNNGTC 1 cut(s) 136
AccII CGCG 1 cut(s) 60
AciI CCGC 2 cut(s) 471, 528
AcsI RAATTY 2 cut(s) 635, 688
AcuI CTGAAG 1 cut(s) 162
AfaI GTAC 2 cut(s) 475, 481
AfiI CCNNNNNNNGG 3 cut(s) 267, 509, 528
AgsI TTSAA 4 cut(s) 37, 179, 610, 695
AhlI ACTAGT 1 cut(s) 476
AjnI CCWGG 3 cut(s) 66, 100, 584
AloI GAACNNNNNNTCC 2 cut(s) 326, 358
AluBI AGCT 1 cut(s) 277
AluI AGCT 1 cut(s) 277
Alw26I GTCTC 2 cut(s) 122, 158
AoxI GGCC 3 cut(s) 189, 223, 616
ApeKI GCWGC 1 cut(s) 708
ApoI RAATTY 2 cut(s) 635, 688
AseI ATTAAT 1 cut(s) 717
AspS9I GGNCC 3 cut(s) 98, 190, 223
AsuC2I CCSGG 2 cut(s) 193, 222
AsuII TTCGAA 2 cut(s) 21, 656
AvaII GGWCC 1 cut(s) 98
BbsI GAAGAC 1 cut(s) 69
BbvI GCAGC 1 cut(s) 720
BccI CCATC 4 cut(s) 166, 349, 353, 737
BciT130I CCWGG 3 cut(s) 68, 102, 586
BclI TGATCA 1 cut(s) 324
BcnI CCSGG 2 cut(s) 193, 222
BcoDI GTCTC 2 cut(s) 122, 158
BcuI ACTAGT 1 cut(s) 476
BfaI CTAG 1 cut(s) 477
BisI GCNGC 1 cut(s) 709
BlsI GCNGC 1 cut(s) 710
Bme1390I CCNGG 5 cut(s) 68, 102, 193, 222, 586
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 3 cut(s) 98, 190, 223
BmiI GGNNCC 2 cut(s) 99, 520
BmrFI CCNGG 5 cut(s) 68, 102, 193, 222, 586
BmrI ACTGGG 2 cut(s) 118, 564
BmuI ACTGGG 2 cut(s) 118, 564
BoxI GACNNNNGTC 1 cut(s) 360
BpiI GAAGAC 1 cut(s) 69
BplI GAGNNNNNCTC 2 cut(s) 606, 638
Bpu14I TTCGAA 2 cut(s) 21, 656
BpuEI CTTGAG 1 cut(s) 59
BpuMI CCSGG 2 cut(s) 193, 222
BsaBI GATNNNNATC 1 cut(s) 363
BsaWI WCCGGW 1 cut(s) 521
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
Bsc4I CCNNNNNNNGG 3 cut(s) 267, 509, 528
Bse1I ACTGG 4 cut(s) 113, 136, 257, 559
Bse8I GATNNNNATC 1 cut(s) 363
BseBI CCWGG 3 cut(s) 68, 102, 586
BseGI GGATG 3 cut(s) 341, 565, 748
BseJI GATNNNNATC 1 cut(s) 363
BseLI CCNNNNNNNGG 3 cut(s) 267, 509, 528
BseMII CTCAG 4 cut(s) 27, 159, 177, 488
BseNI ACTGG 4 cut(s) 113, 136, 257, 559
BseRI GAGGAG 3 cut(s) 414, 417, 420
BseXI GCAGC 1 cut(s) 720
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 3 cut(s) 191, 225, 618
BsiSI CCGG 3 cut(s) 193, 221, 522
BslI CCNNNNNNNGG 3 cut(s) 267, 509, 528
BsmAI GTCTC 2 cut(s) 122, 158
BsnI GGCC 3 cut(s) 191, 225, 618
Bsp119I TTCGAA 2 cut(s) 21, 656
Bsp143I GATC 3 cut(s) 324, 448, 562
Bsp68I TCGCGA 1 cut(s) 60
BspACI CCGC 2 cut(s) 471, 528
BspANI GGCC 3 cut(s) 191, 225, 618
BspCNI CTCAG 4 cut(s) 26, 160, 178, 489
BspFNI CGCG 1 cut(s) 60
BspHI TCATGA 2 cut(s) 684, 721
BspLI GGNNCC 2 cut(s) 99, 520
BspT104I TTCGAA 2 cut(s) 21, 656
BsrI ACTGG 4 cut(s) 113, 136, 257, 559
BssMI GATC 3 cut(s) 324, 448, 562
Bst2UI CCWGG 3 cut(s) 68, 102, 586
Bst4CI ACNGT 1 cut(s) 349
Bst6I CTCTTC 2 cut(s) 138, 150
BstBI TTCGAA 2 cut(s) 21, 656
BstC8I GCNNGC 2 cut(s) 58, 279
BstDEI CTNAG 4 cut(s) 13, 168, 186, 497
BstF5I GGATG 3 cut(s) 341, 565, 748
BstFNI CGCG 1 cut(s) 60
BstKTI GATC 3 cut(s) 327, 451, 565
BstMAI GTCTC 2 cut(s) 122, 158
BstMBI GATC 3 cut(s) 324, 448, 562
BstMWI GCNNNNNNNGC 1 cut(s) 431
BstNI CCWGG 3 cut(s) 68, 102, 586
BstPAI GACNNNNGTC 1 cut(s) 360
BstSCI CCNGG 5 cut(s) 66, 100, 191, 220, 584
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 720
BstV2I GAAGAC 1 cut(s) 69
BstXI CCANNNNNNTGG 1 cut(s) 108
BsuRI GGCC 3 cut(s) 191, 225, 618
BtgZI GCGATG 1 cut(s) 399
BtsCI GGATG 3 cut(s) 341, 565, 748
BtuMI TCGCGA 1 cut(s) 60
Cac8I GCNNGC 2 cut(s) 58, 279
CciI TCATGA 2 cut(s) 684, 721
Cfr13I GGNCC 3 cut(s) 98, 190, 223
CseI GACGC 1 cut(s) 446
CsiI ACCWGGT 1 cut(s) 66
Csp6I GTAC 2 cut(s) 474, 480
CviAII CATG 2 cut(s) 685, 722
CviJI RGCY 5 cut(s) 191, 225, 277, 618, 747
CviKI_1 RGCY 5 cut(s) 191, 225, 277, 618, 747
CviQI GTAC 2 cut(s) 474, 480
DdeI CTNAG 4 cut(s) 13, 168, 186, 497
DpnI GATC 3 cut(s) 326, 450, 564
DpnII GATC 3 cut(s) 324, 448, 562
DrdI GACNNNNNNGTC 1 cut(s) 136
DseDI GACNNNNNNGTC 1 cut(s) 136
Eam1104I CTCTTC 2 cut(s) 138, 150
EarI CTCTTC 2 cut(s) 138, 150
Eco47I GGWCC 1 cut(s) 98
Eco57I CTGAAG 1 cut(s) 162
EcoRI GAATTC 1 cut(s) 635
EcoRII CCWGG 3 cut(s) 66, 100, 584
FaeI CATG 2 cut(s) 688, 725
FaiI YATR 6 cut(s) 47, 494, 573, 581, 686, 723
FalI AAGNNNNNCTT 2 cut(s) 320, 352
FatI CATG 2 cut(s) 684, 721
FauI CCCGC 1 cut(s) 521
FbaI TGATCA 1 cut(s) 324
Fnu4HI GCNGC 1 cut(s) 709
FokI GGATG 2 cut(s) 328, 572
Fsp4HI GCNGC 1 cut(s) 709
FspBI CTAG 1 cut(s) 477
GluI GCNGC 1 cut(s) 709
HaeIII GGCC 3 cut(s) 191, 225, 618
HapII CCGG 3 cut(s) 193, 221, 522
HgaI GACGC 1 cut(s) 446
Hin1II CATG 2 cut(s) 688, 725
HinfI GANTC 5 cut(s) 217, 299, 499, 513, 593
HpaII CCGG 3 cut(s) 193, 221, 522
Hpy188I TCNGA 6 cut(s) 142, 187, 304, 518, 634, 701
Hpy188III TCNNGA 4 cut(s) 59, 312, 685, 722
Hpy99I CGWCG 1 cut(s) 462
HpyAV CCTTC 1 cut(s) 207
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 1 cut(s) 708
HpyF10VI GCNNNNNNNGC 1 cut(s) 431
HpyF3I CTNAG 4 cut(s) 13, 168, 186, 497
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 2 cut(s) 688, 725
Ksp22I TGATCA 1 cut(s) 324
Kzo9I GATC 3 cut(s) 324, 448, 562
Lsp1109I GCAGC 1 cut(s) 720
MabI ACCWGGT 1 cut(s) 66
MaeI CTAG 1 cut(s) 477
MaeII ACGT 1 cut(s) 84
MalI GATC 3 cut(s) 326, 450, 564
MboI GATC 3 cut(s) 324, 448, 562
MboII GAAGA 9 cut(s) 18, 49, 74, 155, 167, 283, 455, 458, 680
MluCI AATT 4 cut(s) 179, 635, 688, 736
MlyI GAGTC 2 cut(s) 508, 522
MmeI TCCRAC 2 cut(s) 496, 679
MseI TTAA 1 cut(s) 717
MslI CAYNNNNRTG 1 cut(s) 573
MspI CCGG 3 cut(s) 193, 221, 522
MspR9I CCNGG 5 cut(s) 68, 102, 193, 222, 586
MvaI CCWGG 3 cut(s) 68, 102, 586
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 431
NciI CCSGG 2 cut(s) 193, 222
NdeII GATC 3 cut(s) 324, 448, 562
NlaIII CATG 2 cut(s) 688, 725
NlaIV GGNNCC 2 cut(s) 99, 520
NruI TCGCGA 1 cut(s) 60
NspV TTCGAA 2 cut(s) 21, 656
PagI TCATGA 2 cut(s) 684, 721
PfeI GAWTC 3 cut(s) 217, 299, 593
PflFI GACNNNGTC 1 cut(s) 83
PkrI GCNGC 1 cut(s) 710
PleI GAGTC 2 cut(s) 507, 521
PpsI GAGTC 2 cut(s) 507, 521
PshAI GACNNNNGTC 1 cut(s) 360
PshBI ATTAAT 1 cut(s) 717
PsiI TTATAA 1 cut(s) 573
Psp6I CCWGG 3 cut(s) 66, 100, 584
PspGI CCWGG 3 cut(s) 66, 100, 584
PspN4I GGNNCC 2 cut(s) 99, 520
PspPI GGNCC 3 cut(s) 98, 190, 223
PsyI GACNNNGTC 1 cut(s) 83
RruI TCGCGA 1 cut(s) 60
RsaI GTAC 2 cut(s) 475, 481
RsaNI GTAC 2 cut(s) 474, 480
RseI CAYNNNNRTG 1 cut(s) 573
SaqAI TTAA 1 cut(s) 717
SatI GCNGC 1 cut(s) 709
Sau3AI GATC 3 cut(s) 324, 448, 562
Sau96I GGNCC 3 cut(s) 98, 190, 223
SchI GAGTC 2 cut(s) 508, 522
ScrFI CCNGG 5 cut(s) 68, 102, 193, 222, 586
SetI ASST 8 cut(s) 19, 46, 72, 87, 279, 587, 683, 706
SexAI ACCWGGT 1 cut(s) 66
SfuI TTCGAA 2 cut(s) 21, 656
SinI GGWCC 1 cut(s) 98
SmiMI CAYNNNNRTG 1 cut(s) 573
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
SpeI ACTAGT 1 cut(s) 476
Sse9I AATT 4 cut(s) 179, 635, 688, 736
SsiI CCGC 2 cut(s) 471, 528
SspMI CTAG 1 cut(s) 477
StyD4I CCNGG 5 cut(s) 66, 100, 191, 220, 584
TaaI ACNGT 1 cut(s) 349
TaiI ACGT 1 cut(s) 87
TaqI TCGA 5 cut(s) 21, 311, 546, 596, 656
TasI AATT 4 cut(s) 179, 635, 688, 736
TfiI GAWTC 3 cut(s) 217, 299, 593
Tru1I TTAA 1 cut(s) 717
Tru9I TTAA 1 cut(s) 717
TseI GCWGC 1 cut(s) 708
TspDTI ATGAA 3 cut(s) 252, 673, 701
TspGWI ACGGA 1 cut(s) 283
Tth111I GACNNNGTC 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 98
VspI ATTAAT 1 cut(s) 717
XapI RAATTY 2 cut(s) 635, 688
XspI CTAG 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.