Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004526

Physical Location & Seq

Genomic Coordinates Forward (+)

67245460 .. 67246649

Gene Structure 1190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G044060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGGAAGACGCTCTCGCTTCGAAAAGGAGGGAATGAAAAAAGGAGCGTGGACCGCCCGAGAAGACCAGATTCTGATAGACTACGTCAAAAAGCACGGTGAAGGCAAATGGGGAAAAATTTCAAAAGAAACAGGCCTGAAAAGATGTGGGAAGAGTGTGAGACTTCGATGGTTGAATTATTTGAGGCCTGATATTAAGAGAGGCAACATTGCAGATGATGAAGAGGAGCTCATCATCAGGCTCCACAGACTTTTGGGCAACAGATGGTCATTGATAGCCGGAAGAATACCTGGCCGAACTGACAATGAGATTAAAAACTACTGGAATTCCACTCTAAGGAGGAAGCTACAGCAAGAAAATCACTTAAATGAGATCAAGGAGAACTCCTCATCCCCCAACGGTAGCGGCGCCTCCGAGGACGACCCACATTCGACCAAAAATAATGGAGAGGTTGGAGGAGGGATGGTGGAACCAACAAGCTCTTACTGCTTCACCAATCTCAATGAAAAGAAAGAAGATCATCAGCGTTATCATCTTGAAAGTACCACCACTACTACTACAAATAAAACAACATTTTTCTCCGGTGCCACCGTTGAAGCCGAAGCAAACAAGAATGATATAGAGCTAGCTGGAGACGACTTGAGCAATGATGTGACGTGGAATGATTTCATAATGGATCTAAATGAAGATCAACTTTCAAAGCTTTGTGAATCGGAGAGTCCCATGAAGGTAGAAGTTGGAGGTTGCAGCACCAATCATGAGCTGCCAAATAATTCGGCAGCCGGCCGCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

264

Amino Acids

29.83

Weight (kDa)

6.21

Isoelectric Point (pI)

43.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	3.4e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 75	1.4e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	71 - 111	5.6e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	72 - 120	7.4e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004526)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31070 FvH4_2g31070 FvH4_4g02400
rosa_chinensis	RchiOBHm_Chr4g0389841 RchiOBHm_Chr5g0019651 RchiOBHm_Chr6g0311731
rosa_laevigata	RLG00000009947 RLG00000010379
rosa_multiflora	Rmu_co8139852.1_g000001 Rmu_sc0002702.1_g000022 Rmu_sc0002888.1_g000030 Rmu_sc0030932.1_g000007
rosa_roxburghii	Rroxscaffold_1G00058440 Rroxscaffold_5G00335890 Rroxscaffold_5G00335920 Rroxscaffold_7G00157360
rosa_rugosa	Rorug03G0325700 Rorug03G0326000 Rorug03G0326100 Rorug03G0326200 Rorug05G0052400
rosa_samantha	Rh4AG030400 Rh4BG023600 Rh4CG033000 Rh5AG143000 Rh5BG141600 Rh5CG153600 Rh6BG517200 Rh6DG508800
rosa_wichuraiana	Rw4G002290 Rw5G012670 Rw6G044060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	407, 584
AciI	CCGC	3 cut(s)	54, 405, 787
AclWI	GGATC	1 cut(s)	684
AcoI	YGGCCR	2 cut(s)	292, 784
AcsI	RAATTY	2 cut(s)	117, 325
AcyI	GRCGYC	1 cut(s)	408
AfaI	GTAC	1 cut(s)	544
AfiI	CCNNNNNNNGG	1 cut(s)	336
AgsI	TTSAA	5 cut(s)	123, 175, 539, 596, 699
AjiI	CACGTC	1 cut(s)	657
AjnI	CCWGG	1 cut(s)	289
AloI	GAACNNNNNNTCC	2 cut(s)	374, 406
AluBI	AGCT	8 cut(s)	229, 346, 480, 625, 629, 703, 763, 792
AluI	AGCT	8 cut(s)	229, 346, 480, 625, 629, 703, 763, 792
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	2 cut(s)	154, 627
AlwI	GGATC	1 cut(s)	684
AlwNI	CAGNNNCTG	1 cut(s)	73
Ama87I	CYCGRG	1 cut(s)	57
AoxI	GGCC	4 cut(s)	133, 185, 292, 784
ApeKI	GCWGC	4 cut(s)	747, 763, 779, 789
ApoI	RAATTY	2 cut(s)	117, 325
Asp700I	GAANNNNTTC	2 cut(s)	118, 665
AspLEI	GCGC	1 cut(s)	410
AspS9I	GGNCC	1 cut(s)	51
AsuHPI	GGTGA	2 cut(s)	110, 484
AsuII	TTCGAA	1 cut(s)	21
AsuNHI	GCTAGC	1 cut(s)	625
AvaI	CYCGRG	1 cut(s)	57
AvaII	GGWCC	1 cut(s)	51
BanI	GGYRCC	2 cut(s)	407, 584
BanII	GRGCYC	1 cut(s)	231
BbsI	GAAGAC	2 cut(s)	13, 69
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	3 cut(s)	750, 759, 791
BccI	CCATC	3 cut(s)	162, 258, 457
BciT130I	CCWGG	1 cut(s)	291
BcoDI	GTCTC	2 cut(s)	154, 627
BfaI	CTAG	2 cut(s)	626, 793
BfmI	CTRYAG	1 cut(s)	347
BfoI	RGCGCY	1 cut(s)	411
BisI	GCNGC	6 cut(s)	406, 748, 764, 780, 787, 790
BlsI	GCNGC	6 cut(s)	407, 749, 765, 781, 788, 791
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	1 cut(s)	51
BmeT110I	CYCGRG	1 cut(s)	57
BmgBI	CACGTC	1 cut(s)	657
BmgT120I	GGNCC	1 cut(s)	51
BmiI	GGNNCC	4 cut(s)	242, 409, 471, 586
BmrFI	CCNGG	1 cut(s)	291
BmtI	GCTAGC	1 cut(s)	629
BpiI	GAAGAC	2 cut(s)	13, 69
BplI	GAGNNNNNCTC	2 cut(s)	371, 403
BpmI	CTGGAG	1 cut(s)	651
Bpu14I	TTCGAA	1 cut(s)	21
BpuEI	CTTGAG	1 cut(s)	661
BsaHI	GRCGYC	1 cut(s)	408
BsaJI	CCNNGG	1 cut(s)	414
BsaWI	WCCGGW	1 cut(s)	581
BsaXI	ACNNNNNCTCC	2 cut(s)	450, 480
Bsc4I	CCNNNNNNNGG	1 cut(s)	336
Bse118I	RCCGGY	1 cut(s)	782
Bse1I	ACTGG	1 cut(s)	326
Bse3DI	GCAATG	2 cut(s)	207, 652
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	414
BseGI	GGATG	2 cut(s)	389, 468
BseLI	CCNNNNNNNGG	1 cut(s)	336
BseMI	GCAATG	2 cut(s)	207, 652
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	3 cut(s)	239, 376, 471
BseX3I	CGGCCG	1 cut(s)	784
BseXI	GCAGC	3 cut(s)	750, 759, 791
Bsh1285I	CGRYCG	1 cut(s)	787
BshFI	GGCC	4 cut(s)	135, 187, 294, 786
BshNI	GGYRCC	2 cut(s)	407, 584
BsiEI	CGRYCG	1 cut(s)	787
BsiHKAI	GWGCWC	1 cut(s)	231
BsiHKCI	CYCGRG	1 cut(s)	57
BsiSI	CCGG	3 cut(s)	279, 582, 783
BslFI	GGGAC	1 cut(s)	705
BslI	CCNNNNNNNGG	1 cut(s)	336
BsmAI	GTCTC	2 cut(s)	154, 627
BsmBI	CGTCTC	1 cut(s)	627
BsmFI	GGGAC	1 cut(s)	705
BsnI	GGCC	4 cut(s)	135, 187, 294, 786
BsoBI	CYCGRG	1 cut(s)	57
Bsp119I	TTCGAA	1 cut(s)	21
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	4 cut(s)	372, 517, 676, 688
BspACI	CCGC	3 cut(s)	54, 405, 787
BspANI	GGCC	4 cut(s)	135, 187, 294, 786
BspHI	TCATGA	1 cut(s)	757
BspLI	GGNNCC	4 cut(s)	242, 409, 471, 586
BspOI	GCTAGC	1 cut(s)	629
BspPI	GGATC	1 cut(s)	684
BspT104I	TTCGAA	1 cut(s)	21
BspT107I	GGYRCC	2 cut(s)	407, 584
BsrDI	GCAATG	2 cut(s)	207, 652
BsrFI	RCCGGY	1 cut(s)	782
BsrI	ACTGG	1 cut(s)	326
BssAI	RCCGGY	1 cut(s)	782
BssECI	CCNNGG	1 cut(s)	414
BssMI	GATC	4 cut(s)	372, 517, 676, 688
BssNI	GRCGYC	1 cut(s)	408
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	3 cut(s)	98, 401, 592
Bst6I	CTCTTC	2 cut(s)	146, 216
BstACI	GRCGYC	1 cut(s)	408
BstBI	TTCGAA	1 cut(s)	21
BstC8I	GCNNGC	2 cut(s)	627, 784
BstDEI	CTNAG	1 cut(s)	335
BstF5I	GGATG	2 cut(s)	389, 468
BstH2I	RGCGCY	1 cut(s)	411
BstHHI	GCGC	1 cut(s)	410
BstKTI	GATC	4 cut(s)	375, 520, 679, 691
BstMAI	GTCTC	2 cut(s)	154, 627
BstMBI	GATC	4 cut(s)	372, 517, 676, 688
BstMCI	CGRYCG	1 cut(s)	787
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 486
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	1 cut(s)	347
BstV1I	GCAGC	3 cut(s)	750, 759, 791
BstV2I	GAAGAC	2 cut(s)	13, 69
BstX2I	RGATCY	1 cut(s)	676
BstYI	RGATCY	1 cut(s)	676
BstZI	CGGCCG	1 cut(s)	784
BsuRI	GGCC	4 cut(s)	135, 187, 294, 786
BtrI	CACGTC	1 cut(s)	657
BtsCI	GGATG	2 cut(s)	389, 468
Cac8I	GCNNGC	2 cut(s)	627, 784
CaiI	CAGNNNCTG	1 cut(s)	73
CciI	TCATGA	1 cut(s)	757
CfoI	GCGC	1 cut(s)	410
Cfr10I	RCCGGY	1 cut(s)	782
Cfr13I	GGNCC	1 cut(s)	51
CseI	GACGC	1 cut(s)	18
Csp6I	GTAC	1 cut(s)	543
CviAII	CATG	2 cut(s)	724, 758
CviQI	GTAC	1 cut(s)	543
DdeI	CTNAG	1 cut(s)	335
DinI	GGCGCC	1 cut(s)	409
DpnI	GATC	4 cut(s)	374, 519, 678, 690
DpnII	GATC	4 cut(s)	372, 517, 676, 688
EaeI	YGGCCR	2 cut(s)	292, 784
EagI	CGGCCG	1 cut(s)	784
Eam1104I	CTCTTC	2 cut(s)	146, 216
EarI	CTCTTC	2 cut(s)	146, 216
Ecl136II	GAGCTC	1 cut(s)	229
EclXI	CGGCCG	1 cut(s)	784
Eco147I	AGGCCT	2 cut(s)	135, 187
Eco24I	GRGCYC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	51
Eco52I	CGGCCG	1 cut(s)	784
Eco53kI	GAGCTC	1 cut(s)	229
Eco88I	CYCGRG	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	229
EcoRI	GAATTC	1 cut(s)	325
EcoRII	CCWGG	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	231
EgeI	GGCGCC	1 cut(s)	409
EheI	GGCGCC	1 cut(s)	409
Esp3I	CGTCTC	1 cut(s)	627
FaeI	CATG	2 cut(s)	727, 761
FaiI	YATR	4 cut(s)	620, 671, 725, 759
FalI	AAGNNNNNCTT	2 cut(s)	678, 710
FaqI	GGGAC	1 cut(s)	705
FatI	CATG	2 cut(s)	723, 757
Fnu4HI	GCNGC	6 cut(s)	406, 748, 764, 780, 787, 790
FokI	GGATG	2 cut(s)	376, 475
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	6 cut(s)	406, 748, 764, 780, 787, 790
FspBI	CTAG	2 cut(s)	626, 793
GlaI	GCGC	1 cut(s)	409
GluI	GCNGC	6 cut(s)	406, 748, 764, 780, 787, 790
GsuI	CTGGAG	1 cut(s)	651
HaeII	RGCGCY	1 cut(s)	411
HaeIII	GGCC	4 cut(s)	135, 187, 294, 786
HapII	CCGG	3 cut(s)	279, 582, 783
HgaI	GACGC	1 cut(s)	18
HhaI	GCGC	1 cut(s)	410
Hin1I	GRCGYC	1 cut(s)	408
Hin1II	CATG	2 cut(s)	727, 761
Hin6I	GCGC	1 cut(s)	408
HinP1I	GCGC	1 cut(s)	408
HindIII	AAGCTT	1 cut(s)	701
HinfI	GANTC	3 cut(s)	70, 710, 718
HpaII	CCGG	3 cut(s)	279, 582, 783
HphI	GGTGA	2 cut(s)	110, 484
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	3 cut(s)	75, 415, 715
Hpy188III	TCNNGA	2 cut(s)	536, 758
Hpy8I	GTNNAC	1 cut(s)	51
HpyAV	CCTTC	2 cut(s)	95, 721
HpyCH4III	ACNGT	3 cut(s)	98, 401, 592
HpyCH4IV	ACGT	2 cut(s)	84, 656
HpyCH4V	TGCA	2 cut(s)	212, 747
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 486
HpyF3I	CTNAG	1 cut(s)	335
HpySE526I	ACGT	2 cut(s)	84, 656
Hsp92I	GRCGYC	1 cut(s)	408
Hsp92II	CATG	2 cut(s)	727, 761
HspAI	GCGC	1 cut(s)	408
KasI	GGCGCC	1 cut(s)	407
KroI	GCCGGC	1 cut(s)	782
KroNI	GCCGGC	1 cut(s)	784
Kzo9I	GATC	4 cut(s)	372, 517, 676, 688
LmnI	GCTCC	3 cut(s)	44, 226, 246
Lsp1109I	GCAGC	3 cut(s)	750, 759, 791
MaeI	CTAG	2 cut(s)	626, 793
MaeII	ACGT	2 cut(s)	84, 656
MaeIII	GTNAC	1 cut(s)	652
MalI	GATC	4 cut(s)	374, 519, 678, 690
MboI	GATC	4 cut(s)	372, 517, 676, 688
MboII	GAAGA	7 cut(s)	18, 74, 163, 233, 294, 527, 698
MflI	RGATCY	1 cut(s)	676
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	4 cut(s)	117, 175, 325, 772
Mly113I	GGCGCC	1 cut(s)	408
MlyI	GAGTC	1 cut(s)	727
MmeI	TCCRAC	2 cut(s)	433, 718
MroNI	GCCGGC	1 cut(s)	782
MroXI	GAANNNNTTC	2 cut(s)	118, 665
MseI	TTAA	3 cut(s)	195, 312, 365
MslI	CAYNNNNRTG	1 cut(s)	366
MspI	CCGG	3 cut(s)	279, 582, 783
MspR9I	CCNGG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	2 cut(s)	53, 486
NaeI	GCCGGC	1 cut(s)	784
NarI	GGCGCC	1 cut(s)	408
NdeII	GATC	4 cut(s)	372, 517, 676, 688
NgoMIV	GCCGGC	1 cut(s)	782
NheI	GCTAGC	1 cut(s)	625
NlaIII	CATG	2 cut(s)	727, 761
NlaIV	GGNNCC	4 cut(s)	242, 409, 471, 586
NmuCI	GTSAC	1 cut(s)	652
NspV	TTCGAA	1 cut(s)	21
PagI	TCATGA	1 cut(s)	757
PceI	AGGCCT	2 cut(s)	135, 187
PdiI	GCCGGC	1 cut(s)	784
PdmI	GAANNNNTTC	2 cut(s)	118, 665
PfeI	GAWTC	2 cut(s)	70, 710
PflFI	GACNNNGTC	1 cut(s)	83
PkrI	GCNGC	6 cut(s)	407, 749, 765, 781, 788, 791
PleI	GAGTC	1 cut(s)	726
PluTI	GGCGCC	1 cut(s)	411
PpsI	GAGTC	1 cut(s)	726
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	4 cut(s)	242, 409, 471, 586
PspPI	GGNCC	1 cut(s)	51
PstNI	CAGNNNCTG	1 cut(s)	73
PsuI	RGATCY	1 cut(s)	676
PsyI	GACNNNGTC	1 cut(s)	83
RsaI	GTAC	1 cut(s)	544
RsaNI	GTAC	1 cut(s)	543
RseI	CAYNNNNRTG	1 cut(s)	366
SacI	GAGCTC	1 cut(s)	231
SaqAI	TTAA	3 cut(s)	195, 312, 365
SatI	GCNGC	6 cut(s)	406, 748, 764, 780, 787, 790
Sau3AI	GATC	4 cut(s)	372, 517, 676, 688
Sau96I	GGNCC	1 cut(s)	51
SchI	GAGTC	1 cut(s)	727
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	1 cut(s)	231
SfcI	CTRYAG	1 cut(s)	347
SfoI	GGCGCC	1 cut(s)	409
SfuI	TTCGAA	1 cut(s)	21
SinI	GGWCC	1 cut(s)	51
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	1 cut(s)	640
SmoI	CTYRAG	1 cut(s)	640
Sse9I	AATT	4 cut(s)	117, 175, 325, 772
SseBI	AGGCCT	2 cut(s)	135, 187
SsiI	CCGC	3 cut(s)	54, 405, 787
SspDI	GGCGCC	1 cut(s)	407
SspMI	CTAG	2 cut(s)	626, 793
SstI	GAGCTC	1 cut(s)	231
StuI	AGGCCT	2 cut(s)	135, 187
StyD4I	CCNGG	1 cut(s)	289
TaaI	ACNGT	3 cut(s)	98, 401, 592
TaiI	ACGT	2 cut(s)	87, 659
TaqI	TCGA	3 cut(s)	21, 166, 431
TasI	AATT	4 cut(s)	117, 175, 325, 772
TauI	GCSGC	2 cut(s)	408, 789
TfiI	GAWTC	2 cut(s)	70, 710
Tru1I	TTAA	3 cut(s)	195, 312, 365
Tru9I	TTAA	3 cut(s)	195, 312, 365
TseFI	GTSAC	1 cut(s)	652
TseI	GCWGC	4 cut(s)	747, 763, 779, 789
Tsp45I	GTSAC	1 cut(s)	652
TspDTI	ATGAA	6 cut(s)	50, 234, 519, 658, 699, 740
Tth111I	GACNNNGTC	1 cut(s)	83
VpaK11BI	GGWCC	1 cut(s)	51
XapI	RAATTY	2 cut(s)	117, 325
XmnI	GAANNNNTTC	2 cut(s)	118, 665
XspI	CTAG	2 cut(s)	626, 793

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.