Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002718

Physical Location & Seq

Genomic Coordinates Reverse (-)

3543610 .. 3545513

Gene Structure 1904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g06161.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGGACAACTAGAAGCTCAAGAACGGCATCTGAGCATCACGGTTCAAGAATCAAATGAAGCAAACTCCCTACCAGATCGGCGCAGAGGTTTTAACTGGTGGCTTAAAATGTTGATTTACACAGTCTTTGTCCTTGCTGGCCAGGCAATTGCAACACTCTTGGGAAGACAGTACTATGAGAAAGGTGGTAAAAGCAACTGGCTGGCTACATTAGTACAAATTTGTGGCTTTCCTATCTTCCTTCCATATTATTGTATACCAGCATGGAACAAAAACTGTCCAACCACAAATAGTACTATAGCAATCGAGTCAAAGCCACCGTCTACATTAGTCCTTGCATCAATTTATGGAGTTCTTGGCACCCTCATAGCAGCAGACTACTACTTGTATTCATTAGGAATATCTTACCTTCCTGTATCTACTTTCTCCCTTATTTCTGCCTCCCAACTTGTCTTCAATGCAATTTTCTCCTTCTTCCTCAACTCGCAGAAGATCACTCCTTACATTGTCAACTCTCTTGTTGTCCTGATTATCTCATCCAGCCTCCTAGTGCTTCAAGGAGACGGCTCTGCCGACTCGAGTACAGTTTCCAGGTCCAAGTACATAATAGGCTTCATCTGCACCGTTGGGGCATCTGCTGGATATGCATTGACACTTTCTCTAACGCAGCTAGCCTTCACAAAGGTAATAAAAAAAGAATCATTTAGAGTGATCATGGATATGACAGTGTATCAATCAGTCGCTGCAACCGCTATTATCTTGGTGGGATTTTTTGCTAGTGGTGATTGGAAGGGTGTAACGCATGAGATGCAGGGGTTTCAGTTAGGGAAGGTGGCCTATATTATGAATGTAACATGGACAGCTATTAATTGGCAGCTCTTTCAGTTGGGAGTTGTGGGGTTAGTATTTGAGGCATCATCCCTCTTCTCAAATTCTATAGGTGCTGTGGGTTTGCCTATTGTTCCAGTTCTAGCTGTGATCTTCTTCCATGAAAAAATGGATGGGATAAAGGTAGTGTCCCTGGTTTTAGCTATCTGGGGATTTATTTCATATGTTTATCAGCACTACCTAGATGATTGTAAGTCCAAGAGTGAGAAGAAAGATGCCAATGATGAAGTAGCTCTTCCTCTGGAAAACATCAATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUNUT

Protein Analysis

383

Amino Acids

42.01

Weight (kDa)

7.58

Isoelectric Point (pI)

30.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUNUT	PF16913	37 - 359	5.9e-115	Purine nucleobase transmembrane transport
EamA	PF00892	39 - 184	3.4e-06	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18195 AT4G18197 AT4G18205 AT4G18210 AT4G18220
fragaria_vesca	FvH4_3g06161 FvH4_3g06170 FvH4_3g06171
malus_domestica	MD05G1290000.v1.1 MD10G1265700.v1.1 MD10G1266100.v1.1 MD10G1266200.v1.1 MD16G1205700.v1.1
prunus_persica	Prupe.4G075600_v2.0.a1 Prupe.4G075700_v2.0.a1 Prupe.4G179000_v2.0.a1 Prupe.4G179000_v2.0.a1
pyrus_communis	pycom05g26700 pycom10g22160 pycom10g22190
rosa_chinensis	RchiOBHm_Chr2g0095021 RchiOBHm_Chr5g0011461 RchiOBHm_Chr5g0013171
rosa_laevigata	RLG00000020229 RLG00000031993
rosa_multiflora	Rmu_sc0003892.1_g000002 Rmu_sc0004521.1_g000002 Rmu_sc0004521.1_g000004
rosa_roxburghii	Rroxscaffold_1G00063430
rosa_rugosa	Rorug01G0225400 Rorug05G0007500 Rorug05G0007600 Rorug05G0007600 Rorug05G0007700
rosa_samantha	Rh5AG102000 Rh5BG098200 Rh5DG097500
rosa_wichuraiana	Rw5G008900 Rw7G021620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	359
AccI	GTMKAC	2 cut(s)	256, 323
AciI	CCGC	1 cut(s)	750
AcoI	YGGCCR	1 cut(s)	139
AcsI	RAATTY	2 cut(s)	219, 931
AfaI	GTAC	5 cut(s)	173, 216, 295, 583, 602
AgsI	TTSAA	3 cut(s)	47, 457, 557
AjnI	CCWGG	3 cut(s)	141, 590, 1020
AluBI	AGCT	7 cut(s)	17, 670, 863, 877, 974, 1031, 1121
AluI	AGCT	7 cut(s)	17, 670, 863, 877, 974, 1031, 1121
Alw26I	GTCTC	1 cut(s)	555
AlwNI	CAGNNNCTG	1 cut(s)	743
Ama87I	CYCGRG	1 cut(s)	577
AoxI	GGCC	2 cut(s)	139, 834
ApeKI	GCWGC	4 cut(s)	371, 667, 743, 874
ApoI	RAATTY	2 cut(s)	219, 931
ArsI	GACNNNNNNTTYG	2 cut(s)	305, 337
AseI	ATTAAT	1 cut(s)	867
AspLEI	GCGC	1 cut(s)	84
AspS9I	GGNCC	1 cut(s)	594
AsuHPI	GGTGA	1 cut(s)	794
AsuNHI	GCTAGC	1 cut(s)	670
AvaI	CYCGRG	1 cut(s)	577
AvaII	GGWCC	1 cut(s)	594
BalI	TGGCCA	1 cut(s)	141
BanI	GGYRCC	1 cut(s)	359
BbsI	GAAGAC	2 cut(s)	172, 445
BbvI	GCAGC	4 cut(s)	383, 679, 730, 886
BccI	CCATC	1 cut(s)	995
BceAI	ACGGC	2 cut(s)	41, 580
BciT130I	CCWGG	3 cut(s)	143, 592, 1022
BclI	TGATCA	1 cut(s)	711
BcoDI	GTCTC	1 cut(s)	555
BfaI	CTAG	6 cut(s)	11, 548, 671, 777, 971, 1070
BfmI	CTRYAG	2 cut(s)	297, 936
BisI	GCNGC	4 cut(s)	372, 668, 744, 875
BlsI	GCNGC	4 cut(s)	373, 669, 745, 876
BmcAI	AGTACT	2 cut(s)	173, 295
Bme1390I	CCNGG	3 cut(s)	143, 592, 1022
Bme18I	GGWCC	1 cut(s)	594
BmeT110I	CYCGRG	1 cut(s)	577
BmgT120I	GGNCC	1 cut(s)	594
BmiI	GGNNCC	1 cut(s)	361
BmrFI	CCNGG	3 cut(s)	143, 592, 1022
BmsI	GCATC	7 cut(s)	37, 45, 347, 641, 798, 923, 1093
BmtI	GCTAGC	1 cut(s)	674
BpiI	GAAGAC	2 cut(s)	172, 445
BsaJI	CCNNGG	1 cut(s)	1020
Bse1I	ACTGG	3 cut(s)	101, 203, 965
BseBI	CCWGG	3 cut(s)	143, 592, 1022
BseDI	CCNNGG	1 cut(s)	1020
BseGI	GGATG	3 cut(s)	536, 917, 1006
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	3 cut(s)	101, 203, 965
BseXI	GCAGC	4 cut(s)	383, 679, 730, 886
BsgI	GTGCAG	1 cut(s)	604
BshFI	GGCC	2 cut(s)	141, 836
BshNI	GGYRCC	1 cut(s)	359
BsiHKCI	CYCGRG	1 cut(s)	577
BslFI	GGGAC	2 cut(s)	18, 1003
BsmAI	GTCTC	1 cut(s)	555
BsmBI	CGTCTC	1 cut(s)	555
BsmFI	GGGAC	2 cut(s)	18, 1003
BsnI	GGCC	2 cut(s)	141, 836
BsoBI	CYCGRG	1 cut(s)	577
Bsp143I	GATC	4 cut(s)	76, 492, 711, 978
BspACI	CCGC	1 cut(s)	750
BspANI	GGCC	2 cut(s)	141, 836
BspCNI	CTCAG	1 cut(s)	24
BspLI	GGNNCC	1 cut(s)	361
BspOI	GCTAGC	1 cut(s)	674
BspQI	GCTCTTC	1 cut(s)	1128
BspT107I	GGYRCC	1 cut(s)	359
BsrI	ACTGG	3 cut(s)	101, 203, 965
BssECI	CCNNGG	1 cut(s)	1020
BssMI	GATC	4 cut(s)	76, 492, 711, 978
BssNAI	GTATAC	1 cut(s)	257
Bst1107I	GTATAC	1 cut(s)	257
Bst2UI	CCWGG	3 cut(s)	143, 592, 1022
Bst4CI	ACNGT	8 cut(s)	43, 124, 171, 278, 321, 586, 625, 727
Bst6I	CTCTTC	2 cut(s)	929, 1128
BstAPI	GCANNNNNTGC	1 cut(s)	808
BstC8I	GCNNGC	3 cut(s)	139, 204, 672
BstDEI	CTNAG	1 cut(s)	32
BstF5I	GGATG	3 cut(s)	536, 917, 1006
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	4 cut(s)	79, 495, 714, 981
BstMAI	GTCTC	1 cut(s)	555
BstMBI	GATC	4 cut(s)	76, 492, 711, 978
BstMWI	GCNNNNNNNGC	5 cut(s)	143, 618, 644, 749, 808
BstNI	CCWGG	3 cut(s)	143, 592, 1022
BstSCI	CCNGG	3 cut(s)	141, 590, 1020
BstSFI	CTRYAG	2 cut(s)	297, 936
BstV1I	GCAGC	4 cut(s)	383, 679, 730, 886
BstV2I	GAAGAC	2 cut(s)	172, 445
BstZ17I	GTATAC	1 cut(s)	257
BsuRI	GGCC	2 cut(s)	141, 836
BtsCI	GGATG	3 cut(s)	536, 917, 1006
BtsIMutI	CAGTG	1 cut(s)	732
Cac8I	GCNNGC	3 cut(s)	139, 204, 672
CaiI	CAGNNNCTG	1 cut(s)	743
CfoI	GCGC	1 cut(s)	84
Cfr13I	GGNCC	1 cut(s)	594
Csp6I	GTAC	5 cut(s)	172, 215, 294, 582, 601
CviAII	CATG	5 cut(s)	264, 715, 803, 855, 989
CviQI	GTAC	5 cut(s)	172, 215, 294, 582, 601
DdeI	CTNAG	1 cut(s)	32
DpnI	GATC	4 cut(s)	78, 494, 713, 980
DpnII	GATC	4 cut(s)	76, 492, 711, 978
EaeI	YGGCCR	1 cut(s)	139
Eam1104I	CTCTTC	2 cut(s)	929, 1128
EarI	CTCTTC	2 cut(s)	929, 1128
Eco47I	GGWCC	1 cut(s)	594
Eco88I	CYCGRG	1 cut(s)	577
EcoRII	CCWGG	3 cut(s)	141, 590, 1020
EcoT22I	ATGCAT	1 cut(s)	649
Esp3I	CGTCTC	1 cut(s)	555
FaeI	CATG	5 cut(s)	267, 718, 806, 858, 992
FalI	AAGNNNNNCTT	2 cut(s)	1107, 1139
FaqI	GGGAC	2 cut(s)	18, 1003
FatI	CATG	5 cut(s)	263, 714, 802, 854, 988
FauNDI	CATATG	1 cut(s)	1051
FbaI	TGATCA	1 cut(s)	711
FblI	GTMKAC	2 cut(s)	256, 323
Fnu4HI	GCNGC	4 cut(s)	372, 668, 744, 875
FokI	GGATG	3 cut(s)	523, 904, 1013
Fsp4HI	GCNGC	4 cut(s)	372, 668, 744, 875
FspBI	CTAG	6 cut(s)	11, 548, 671, 777, 971, 1070
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	4 cut(s)	372, 668, 744, 875
HaeIII	GGCC	2 cut(s)	141, 836
HhaI	GCGC	1 cut(s)	84
Hin1II	CATG	5 cut(s)	267, 718, 806, 858, 992
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HincII	GTYRAC	1 cut(s)	511
HindII	GTYRAC	1 cut(s)	511
HinfI	GANTC	4 cut(s)	50, 308, 575, 698
HphI	GGTGA	1 cut(s)	794
Hpy166II	GTNNAC	3 cut(s)	257, 324, 511
Hpy188I	TCNGA	1 cut(s)	33
Hpy188III	TCNNGA	4 cut(s)	20, 47, 526, 1130
Hpy8I	GTNNAC	3 cut(s)	257, 324, 511
HpyAV	CCTTC	6 cut(s)	251, 419, 481, 685, 784, 823
HpyCH4III	ACNGT	8 cut(s)	43, 124, 171, 278, 321, 586, 625, 727
HpyCH4V	TGCA	7 cut(s)	152, 338, 461, 621, 647, 746, 811
HpyF10VI	GCNNNNNNNGC	5 cut(s)	143, 618, 644, 749, 808
HpyF3I	CTNAG	1 cut(s)	32
Hsp92II	CATG	5 cut(s)	267, 718, 806, 858, 992
HspAI	GCGC	1 cut(s)	82
Ksp22I	TGATCA	1 cut(s)	711
Kzo9I	GATC	4 cut(s)	76, 492, 711, 978
LguI	GCTCTTC	1 cut(s)	1128
Lsp1109I	GCAGC	4 cut(s)	383, 679, 730, 886
LweI	GCATC	7 cut(s)	37, 45, 347, 641, 798, 923, 1093
MaeI	CTAG	6 cut(s)	11, 548, 671, 777, 971, 1070
MaeIII	GTNAC	2 cut(s)	796, 850
MalI	GATC	4 cut(s)	78, 494, 713, 980
MboI	GATC	4 cut(s)	76, 492, 711, 978
MfeI	CAATTG	1 cut(s)	147
MlsI	TGGCCA	1 cut(s)	141
MluCI	AATT	6 cut(s)	147, 219, 342, 462, 868, 931
MluNI	TGGCCA	1 cut(s)	141
MlyI	GAGTC	2 cut(s)	317, 569
MmeI	TCCRAC	1 cut(s)	305
MnlI	CCTC	8 cut(s)	80, 374, 451, 488, 554, 904, 932, 1137
Mox20I	TGGCCA	1 cut(s)	141
Mph1103I	ATGCAT	1 cut(s)	649
MscI	TGGCCA	1 cut(s)	141
MseI	TTAA	3 cut(s)	93, 105, 867
MslI	CAYNNNNRTG	1 cut(s)	719
Msp20I	TGGCCA	1 cut(s)	141
MspR9I	CCNGG	3 cut(s)	143, 592, 1022
MunI	CAATTG	1 cut(s)	147
MvaI	CCWGG	3 cut(s)	143, 592, 1022
MwoI	GCNNNNNNNGC	5 cut(s)	143, 618, 644, 749, 808
NdeI	CATATG	1 cut(s)	1051
NdeII	GATC	4 cut(s)	76, 492, 711, 978
NheI	GCTAGC	1 cut(s)	670
NlaIII	CATG	5 cut(s)	267, 718, 806, 858, 992
NlaIV	GGNNCC	1 cut(s)	361
NsiI	ATGCAT	1 cut(s)	649
PaeR7I	CTCGAG	1 cut(s)	577
PciSI	GCTCTTC	1 cut(s)	1128
PcsI	WCGNNNNNNNCGW	1 cut(s)	570
PfeI	GAWTC	2 cut(s)	50, 698
PkrI	GCNGC	4 cut(s)	373, 669, 745, 876
PleI	GAGTC	2 cut(s)	316, 569
PpsI	GAGTC	2 cut(s)	316, 569
PshBI	ATTAAT	1 cut(s)	867
Psp6I	CCWGG	3 cut(s)	141, 590, 1020
PspGI	CCWGG	3 cut(s)	141, 590, 1020
PspN4I	GGNNCC	1 cut(s)	361
PspPI	GGNCC	1 cut(s)	594
PspXI	VCTCGAGB	1 cut(s)	577
PstNI	CAGNNNCTG	1 cut(s)	743
RsaI	GTAC	5 cut(s)	173, 216, 295, 583, 602
RsaNI	GTAC	5 cut(s)	172, 215, 294, 582, 601
RseI	CAYNNNNRTG	1 cut(s)	719
SapI	GCTCTTC	1 cut(s)	1128
SaqAI	TTAA	3 cut(s)	93, 105, 867
SatI	GCNGC	4 cut(s)	372, 668, 744, 875
Sau3AI	GATC	4 cut(s)	76, 492, 711, 978
Sau96I	GGNCC	1 cut(s)	594
ScaI	AGTACT	2 cut(s)	173, 295
SchI	GAGTC	2 cut(s)	317, 569
ScrFI	CCNGG	3 cut(s)	143, 592, 1022
SfaNI	GCATC	7 cut(s)	37, 45, 347, 641, 798, 923, 1093
SfcI	CTRYAG	2 cut(s)	297, 936
Sfr274I	CTCGAG	1 cut(s)	577
SinI	GGWCC	1 cut(s)	594
SlaI	CTCGAG	1 cut(s)	577
SmiMI	CAYNNNNRTG	1 cut(s)	719
SmlI	CTYRAG	2 cut(s)	18, 577
SmoI	CTYRAG	2 cut(s)	18, 577
Sse9I	AATT	6 cut(s)	147, 219, 342, 462, 868, 931
SsiI	CCGC	1 cut(s)	750
SspMI	CTAG	6 cut(s)	11, 548, 671, 777, 971, 1070
StyD4I	CCNGG	3 cut(s)	141, 590, 1020
TaaI	ACNGT	8 cut(s)	43, 124, 171, 278, 321, 586, 625, 727
TaqI	TCGA	2 cut(s)	306, 578
TasI	AATT	6 cut(s)	147, 219, 342, 462, 868, 931
TatI	WGTACW	5 cut(s)	171, 214, 293, 581, 600
TfiI	GAWTC	2 cut(s)	50, 698
Tru1I	TTAA	3 cut(s)	93, 105, 867
Tru9I	TTAA	3 cut(s)	93, 105, 867
TscAI	CASTG	1 cut(s)	732
TseI	GCWGC	4 cut(s)	371, 667, 743, 874
TspDTI	ATGAA	7 cut(s)	72, 381, 604, 860, 1005, 1038, 1128
TspRI	CASTG	1 cut(s)	732
VpaK11BI	GGWCC	1 cut(s)	594
VspI	ATTAAT	1 cut(s)	867
XapI	RAATTY	2 cut(s)	219, 931
XhoI	CTCGAG	1 cut(s)	577
XmiI	GTMKAC	2 cut(s)	256, 323
XspI	CTAG	6 cut(s)	11, 548, 671, 777, 971, 1070
ZrmI	AGTACT	2 cut(s)	173, 295
Zsp2I	ATGCAT	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.