Rw7G021620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0002718
Physical Location & Seq
Forward (+)
25131980 .. 25132333
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G021620.1

Sequence Viewer

Length: 354 bp
ATGTTTCAATCTTTACTGAAACATTATTGGGAAAATTCTACAGTACTGGGGGTATCCCATACTGTGTGTTTTGTGACCGTTGAATCGGTATTATATCCAGGGGTCATGGATATTCGAAACAAGCTGACCTATTCAGAAGGTATCCCGTTTCGCAGTCACTCTCAGTTCGTCACCGTGCCTCCAGCGTCGGGCCTCCGTGAGCGGCGCTCCTCCGCTTCGCTGTGCCACCACGACTCTGCCTCAGTCTCCCTCTGTTCCACAGCGCCCCTCCACTCAAGTAGCAAAGCAGAAAGCCAGAAACTGTTGGTTACACTCGGGGTTCGATTTCTGGGTTTCACTTTTCAAGCTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.98

Weight (kDa)

8.96

Isoelectric Point (pI)

55.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 202
AciI CCGC 2 cut(s) 202, 213
AcsI RAATTY 1 cut(s) 34
AfaI GTAC 1 cut(s) 45
AfiI CCNNNNNNNGG 1 cut(s) 188
AgsI TTSAA 3 cut(s) 8, 83, 344
AjnI CCWGG 1 cut(s) 97
AluBI AGCT 2 cut(s) 124, 347
AluI AGCT 2 cut(s) 124, 347
Alw26I GTCTC 1 cut(s) 250
AlwNI CAGNNNCTG 1 cut(s) 301
Ama87I CYCGRG 1 cut(s) 314
AoxI GGCC 1 cut(s) 190
ApoI RAATTY 1 cut(s) 34
AspLEI GCGC 2 cut(s) 207, 265
AspS9I GGNCC 1 cut(s) 190
AsuHPI GGTGA 1 cut(s) 163
AsuII TTCGAA 1 cut(s) 115
AvaI CYCGRG 1 cut(s) 314
BciT130I CCWGG 1 cut(s) 99
BciVI GTATCC 2 cut(s) 64, 152
BcoDI GTCTC 1 cut(s) 250
BfmI CTRYAG 1 cut(s) 39
BfoI RGCGCY 2 cut(s) 208, 266
BfuI GTATCC 2 cut(s) 64, 152
BisI GCNGC 1 cut(s) 203
BlsI GCNGC 1 cut(s) 204
BmcAI AGTACT 1 cut(s) 45
Bme1390I CCNGG 1 cut(s) 99
BmeT110I CYCGRG 1 cut(s) 314
BmgT120I GGNCC 1 cut(s) 190
BmrFI CCNGG 1 cut(s) 99
BmrI ACTGGG 1 cut(s) 56
BmuI ACTGGG 1 cut(s) 56
BplI GAGNNNNNCTC 2 cut(s) 191, 223
BpmI CTGGAG 1 cut(s) 165
Bpu14I TTCGAA 1 cut(s) 115
BpuEI CTTGAG 1 cut(s) 259
BsaJI CCNNGG 1 cut(s) 98
BsaXI ACNNNNNCTCC 2 cut(s) 163, 193
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse1I ACTGG 1 cut(s) 51
BseBI CCWGG 1 cut(s) 99
BseDI CCNNGG 1 cut(s) 98
BseLI CCNNNNNNNGG 1 cut(s) 188
BseMII CTCAG 2 cut(s) 176, 255
BseNI ACTGG 1 cut(s) 51
BseRI GAGGAG 1 cut(s) 199
BshFI GGCC 1 cut(s) 192
BsiHKCI CYCGRG 1 cut(s) 314
BslI CCNNNNNNNGG 1 cut(s) 188
BsmAI GTCTC 1 cut(s) 250
BsnI GGCC 1 cut(s) 192
BsoBI CYCGRG 1 cut(s) 314
Bsp119I TTCGAA 1 cut(s) 115
BspACI CCGC 2 cut(s) 202, 213
BspANI GGCC 1 cut(s) 192
BspCNI CTCAG 2 cut(s) 175, 254
BspT104I TTCGAA 1 cut(s) 115
BsrBI CCGCTC 1 cut(s) 202
BsrI ACTGG 1 cut(s) 51
BssECI CCNNGG 1 cut(s) 98
Bst2UI CCWGG 1 cut(s) 99
Bst4CI ACNGT 5 cut(s) 43, 64, 79, 175, 303
BstBI TTCGAA 1 cut(s) 115
BstDEI CTNAG 2 cut(s) 162, 241
BstH2I RGCGCY 2 cut(s) 208, 266
BstHHI GCGC 2 cut(s) 207, 265
BstMAI GTCTC 1 cut(s) 250
BstNI CCWGG 1 cut(s) 99
BstSCI CCNGG 1 cut(s) 97
BstSFI CTRYAG 1 cut(s) 39
BsuI GTATCC 2 cut(s) 64, 152
BsuRI GGCC 1 cut(s) 192
CaiI CAGNNNCTG 1 cut(s) 301
CfoI GCGC 2 cut(s) 207, 265
Cfr13I GGNCC 1 cut(s) 190
CseI GACGC 1 cut(s) 174
Csp6I GTAC 1 cut(s) 44
CviAII CATG 1 cut(s) 106
CviJI RGCY 4 cut(s) 124, 192, 294, 347
CviKI_1 RGCY 4 cut(s) 124, 192, 294, 347
CviQI GTAC 1 cut(s) 44
DdeI CTNAG 2 cut(s) 162, 241
Eco88I CYCGRG 1 cut(s) 314
EcoRII CCWGG 1 cut(s) 97
FaeI CATG 1 cut(s) 109
FaiI YATR 3 cut(s) 60, 94, 107
FatI CATG 1 cut(s) 105
Fnu4HI GCNGC 1 cut(s) 203
Fsp4HI GCNGC 1 cut(s) 203
GlaI GCGC 2 cut(s) 206, 264
GluI GCNGC 1 cut(s) 203
GsuI CTGGAG 1 cut(s) 165
HaeII RGCGCY 2 cut(s) 208, 266
HaeIII GGCC 1 cut(s) 192
HgaI GACGC 1 cut(s) 174
HhaI GCGC 2 cut(s) 207, 265
Hin1II CATG 1 cut(s) 109
Hin6I GCGC 2 cut(s) 205, 263
HinP1I GCGC 2 cut(s) 205, 263
HindIII AAGCTT 1 cut(s) 345
HinfI GANTC 2 cut(s) 83, 233
HphI GGTGA 1 cut(s) 163
Hpy188I TCNGA 1 cut(s) 136
Hpy99I CGWCG 1 cut(s) 190
HpyAV CCTTC 1 cut(s) 131
HpyCH4III ACNGT 5 cut(s) 43, 64, 79, 175, 303
HpyF3I CTNAG 2 cut(s) 162, 241
Hsp92II CATG 1 cut(s) 109
HspAI GCGC 2 cut(s) 205, 263
LmnI GCTCC 1 cut(s) 212
LpnPI CCDG 6 cut(s) 32, 84, 111, 195, 308, 314
MaeIII GTNAC 4 cut(s) 73, 155, 169, 307
MbiI CCGCTC 1 cut(s) 202
MluCI AATT 1 cut(s) 34
MlyI GAGTC 1 cut(s) 227
MnlI CCTC 6 cut(s) 189, 203, 220, 250, 260, 278
MspR9I CCNGG 1 cut(s) 99
MvaI CCWGG 1 cut(s) 99
NlaIII CATG 1 cut(s) 109
NmuCI GTSAC 3 cut(s) 73, 155, 169
NspV TTCGAA 1 cut(s) 115
PfeI GAWTC 1 cut(s) 83
PkrI GCNGC 1 cut(s) 204
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
Psp6I CCWGG 1 cut(s) 97
PspGI CCWGG 1 cut(s) 97
PspPI GGNCC 1 cut(s) 190
PstNI CAGNNNCTG 1 cut(s) 301
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
SatI GCNGC 1 cut(s) 203
Sau96I GGNCC 1 cut(s) 190
ScaI AGTACT 1 cut(s) 45
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 99
SetI ASST 4 cut(s) 126, 131, 142, 349
SfcI CTRYAG 1 cut(s) 39
SfuI TTCGAA 1 cut(s) 115
SmlI CTYRAG 1 cut(s) 274
SmoI CTYRAG 1 cut(s) 274
Sse9I AATT 1 cut(s) 34
SsiI CCGC 2 cut(s) 202, 213
StyD4I CCNGG 1 cut(s) 97
TaaI ACNGT 5 cut(s) 43, 64, 79, 175, 303
TaqI TCGA 2 cut(s) 115, 322
TasI AATT 1 cut(s) 34
TatI WGTACW 1 cut(s) 43
TauI GCSGC 1 cut(s) 205
TfiI GAWTC 1 cut(s) 83
TseFI GTSAC 3 cut(s) 73, 155, 169
Tsp45I GTSAC 3 cut(s) 73, 155, 169
TspGWI ACGGA 1 cut(s) 185
XapI RAATTY 1 cut(s) 34
ZrmI AGTACT 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.