Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002718

Physical Location & Seq

Genomic Coordinates Reverse (-)

62680328 .. 62681745

Gene Structure 1418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020229

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGATATTCAAAACAAGCTGACCTATTCAGACGGTATCCCATTTCACCGTCACTCTCAGTTCGTCATCGTGCCTCCAGCGTCGGGCCTCCGTGCGCGGCGCTCCTCCGCTTCGCTGTGCTACCACGACTCTTTCTCTCTCTCTTTCTGCGCGACTCTGCCTCAGTCTCCCTCTGTCATCTTGGTGCGTGATGCTAGTGTTCAAAAGGAAATTTCTAACTCTGTTGGGAAACAAGCTCTTGTTCTTACTATTGTGGAGTGCAAGGGGCTTGAGTTCCAGGAGCATCCAGGGGCTTTCCAATTTAGTTTAGGGTTGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003678 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006353 GO:0006355 GO:0006357 GO:0006364 GO:0006366 GO:0006369 GO:0006378 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008033 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016180 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0019904 GO:0022613 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032574 GO:0032575 GO:0032774 GO:0032991 GO:0033554 GO:0033677 GO:0033678 GO:0033680 GO:0033682 GO:0034470 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0035649 GO:0042254 GO:0042592 GO:0042623 GO:0043139 GO:0043141 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043618 GO:0043620 GO:0043628 GO:0043631 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045005 GO:0045454 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:1990248 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

107

Amino Acids

11.64

Weight (kDa)

7.78

Isoelectric Point (pI)

58.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18195 AT4G18197 AT4G18205 AT4G18210 AT4G18220
fragaria_vesca	FvH4_3g06161 FvH4_3g06170 FvH4_3g06171
malus_domestica	MD05G1290000.v1.1 MD10G1265700.v1.1 MD10G1266100.v1.1 MD10G1266200.v1.1 MD16G1205700.v1.1
prunus_persica	Prupe.4G075600_v2.0.a1 Prupe.4G075700_v2.0.a1 Prupe.4G179000_v2.0.a1 Prupe.4G179000_v2.0.a1
pyrus_communis	pycom05g26700 pycom10g22160 pycom10g22190
rosa_chinensis	RchiOBHm_Chr2g0095021 RchiOBHm_Chr5g0011461 RchiOBHm_Chr5g0013171
rosa_laevigata	RLG00000020229 RLG00000031993
rosa_multiflora	Rmu_sc0003892.1_g000002 Rmu_sc0004521.1_g000002 Rmu_sc0004521.1_g000004
rosa_roxburghii	Rroxscaffold_1G00063430
rosa_rugosa	Rorug01G0225400 Rorug05G0007500 Rorug05G0007600 Rorug05G0007600 Rorug05G0007700
rosa_samantha	Rh5AG102000 Rh5BG098200 Rh5DG097500
rosa_wichuraiana	Rw5G008900 Rw7G021620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	97, 152
AciI	CCGC	2 cut(s)	97, 108
AcsI	RAATTY	1 cut(s)	210
AfiI	CCNNNNNNNGG	1 cut(s)	83
AgsI	TTSAA	2 cut(s)	11, 203
AjnI	CCWGG	2 cut(s)	276, 286
AluBI	AGCT	2 cut(s)	19, 236
AluI	AGCT	2 cut(s)	19, 236
Alw26I	GTCTC	1 cut(s)	171
AoxI	GGCC	1 cut(s)	85
ApoI	RAATTY	1 cut(s)	210
AspLEI	GCGC	3 cut(s)	97, 102, 152
AspS9I	GGNCC	1 cut(s)	85
AsuHPI	GGTGA	1 cut(s)	38
BciT130I	CCWGG	2 cut(s)	278, 288
BciVI	GTATCC	1 cut(s)	47
BcoDI	GTCTC	1 cut(s)	171
BfaI	CTAG	1 cut(s)	195
BfoI	RGCGCY	1 cut(s)	103
BfuI	GTATCC	1 cut(s)	47
BisI	GCNGC	1 cut(s)	98
BlsI	GCNGC	1 cut(s)	99
Bme1390I	CCNGG	2 cut(s)	278, 288
BmgT120I	GGNCC	1 cut(s)	85
BmrFI	CCNGG	2 cut(s)	278, 288
BmsI	GCATC	2 cut(s)	181, 292
BpmI	CTGGAG	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	290
BsaJI	CCNNGG	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
BseBI	CCWGG	2 cut(s)	278, 288
BseDI	CCNNGG	1 cut(s)	287
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMII	CTCAG	2 cut(s)	71, 176
BseRI	GAGGAG	1 cut(s)	94
Bsh1236I	CGCG	2 cut(s)	97, 152
BshFI	GGCC	1 cut(s)	87
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	171
BsnI	GGCC	1 cut(s)	87
BspACI	CCGC	2 cut(s)	97, 108
BspANI	GGCC	1 cut(s)	87
BspCNI	CTCAG	2 cut(s)	70, 175
BspFNI	CGCG	2 cut(s)	97, 152
BssECI	CCNNGG	1 cut(s)	287
Bst2UI	CCWGG	2 cut(s)	278, 288
Bst4CI	ACNGT	2 cut(s)	35, 50
BstDEI	CTNAG	2 cut(s)	57, 162
BstF5I	GGATG	1 cut(s)	283
BstFNI	CGCG	2 cut(s)	97, 152
BstH2I	RGCGCY	1 cut(s)	103
BstHHI	GCGC	3 cut(s)	97, 102, 152
BstMAI	GTCTC	1 cut(s)	171
BstNI	CCWGG	2 cut(s)	278, 288
BstSCI	CCNGG	2 cut(s)	276, 286
BstUI	CGCG	2 cut(s)	97, 152
BsuI	GTATCC	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	283
CfoI	GCGC	3 cut(s)	97, 102, 152
Cfr13I	GGNCC	1 cut(s)	85
CseI	GACGC	1 cut(s)	69
CviJI	RGCY	5 cut(s)	19, 87, 236, 268, 293
CviKI_1	RGCY	5 cut(s)	19, 87, 236, 268, 293
DdeI	CTNAG	2 cut(s)	57, 162
EcoRII	CCWGG	2 cut(s)	276, 286
Fnu4HI	GCNGC	1 cut(s)	98
FokI	GGATG	1 cut(s)	270
Fsp4HI	GCNGC	1 cut(s)	98
FspBI	CTAG	1 cut(s)	195
GlaI	GCGC	3 cut(s)	96, 101, 151
GluI	GCNGC	1 cut(s)	98
GsuI	CTGGAG	1 cut(s)	60
HaeII	RGCGCY	1 cut(s)	103
HaeIII	GGCC	1 cut(s)	87
HgaI	GACGC	1 cut(s)	69
HhaI	GCGC	3 cut(s)	97, 102, 152
Hin6I	GCGC	3 cut(s)	95, 100, 150
HinP1I	GCGC	3 cut(s)	95, 100, 150
HinfI	GANTC	2 cut(s)	128, 154
HphI	GGTGA	1 cut(s)	38
Hpy188I	TCNGA	1 cut(s)	31
Hpy99I	CGWCG	1 cut(s)	85
HpyCH4III	ACNGT	2 cut(s)	35, 50
HpyCH4V	TGCA	2 cut(s)	261, 316
HpyF3I	CTNAG	2 cut(s)	57, 162
HspAI	GCGC	3 cut(s)	95, 100, 150
LmnI	GCTCC	2 cut(s)	107, 280
LpnPI	CCDG	5 cut(s)	90, 263, 273, 290, 300
LweI	GCATC	2 cut(s)	181, 292
MaeI	CTAG	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	50
MluCI	AATT	2 cut(s)	210, 299
MlyI	GAGTC	2 cut(s)	122, 148
MnlI	CCTC	5 cut(s)	84, 98, 115, 171, 181
MslI	CAYNNNNRTG	1 cut(s)	182
MspR9I	CCNGG	2 cut(s)	278, 288
MteI	GCGCNGCGC	1 cut(s)	98
MvaI	CCWGG	2 cut(s)	278, 288
MvnI	CGCG	2 cut(s)	97, 152
NmuCI	GTSAC	1 cut(s)	50
PfoI	TCCNGGA	1 cut(s)	276
PkrI	GCNGC	1 cut(s)	99
PleI	GAGTC	2 cut(s)	122, 148
PpsI	GAGTC	2 cut(s)	122, 148
Psp6I	CCWGG	2 cut(s)	276, 286
PspGI	CCWGG	2 cut(s)	276, 286
PspPI	GGNCC	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	182
SatI	GCNGC	1 cut(s)	98
Sau96I	GGNCC	1 cut(s)	85
SchI	GAGTC	2 cut(s)	122, 148
ScrFI	CCNGG	2 cut(s)	278, 288
SetI	ASST	3 cut(s)	21, 26, 238
SfaNI	GCATC	2 cut(s)	181, 292
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	2 cut(s)	210, 299
SsiI	CCGC	2 cut(s)	97, 108
SspMI	CTAG	1 cut(s)	195
StyD4I	CCNGG	2 cut(s)	276, 286
TaaI	ACNGT	2 cut(s)	35, 50
TasI	AATT	2 cut(s)	210, 299
TauI	GCSGC	1 cut(s)	100
TseFI	GTSAC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	50
TspGWI	ACGGA	1 cut(s)	80
XapI	RAATTY	1 cut(s)	210
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.