Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0002718

Physical Location & Seq

Genomic Coordinates Reverse (-)

18979428 .. 18980018

Gene Structure 591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1205700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGGCAGTTCTAAAGATGGTCCAGTGAAGGACATGCCTCTTGGGGTAGATGCAACAACTGAGGAAGAATATGCATCACAGTCTAGGTTACTTCAAGACTTCACTAGTATTTCCAGCATTGACAAGGCATGGATTTTTAAATCTGATAGCGGAATTGGGTCTCAGGCAATGTTTTCAATTAGTCAACCGAATCTTTTGGCAAACAAGAGGAAGAAATTCATTCTATCCTCTCATATTTCAAGAGAAAGTAACAATTCTGTAAACTTCCAATGGTCCCCGTTCCCGGTTGAGATGACAGGAGTATCTGTATTTGTTCCATCCCCGTCCGGTGCAAAGCTTTTTGTGGTTCGGAATCCTGAACGAATCTCCCTGCCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0016787 GO:0017171 GO:0019538 GO:0022607 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0065003 GO:0070008 GO:0070009 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PD40 Peptidase_S9

Protein Analysis

127

Amino Acids

13.83

Weight (kDa)

8.03

Isoelectric Point (pI)

69.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APEH_N	PF19283	10 - 121	1.5e-49	Acylamino-acid-releasing enzyme, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18195 AT4G18197 AT4G18205 AT4G18210 AT4G18220
fragaria_vesca	FvH4_3g06161 FvH4_3g06170 FvH4_3g06171
malus_domestica	MD05G1290000.v1.1 MD10G1265700.v1.1 MD10G1266100.v1.1 MD10G1266200.v1.1 MD16G1205700.v1.1
prunus_persica	Prupe.4G075600_v2.0.a1 Prupe.4G075700_v2.0.a1 Prupe.4G179000_v2.0.a1 Prupe.4G179000_v2.0.a1
pyrus_communis	pycom05g26700 pycom10g22160 pycom10g22190
rosa_chinensis	RchiOBHm_Chr2g0095021 RchiOBHm_Chr5g0011461 RchiOBHm_Chr5g0013171
rosa_laevigata	RLG00000020229 RLG00000031993
rosa_multiflora	Rmu_sc0003892.1_g000002 Rmu_sc0004521.1_g000002 Rmu_sc0004521.1_g000004
rosa_roxburghii	Rroxscaffold_1G00063430
rosa_rugosa	Rorug01G0225400 Rorug05G0007500 Rorug05G0007600 Rorug05G0007600 Rorug05G0007700
rosa_samantha	Rh5AG102000 Rh5BG098200 Rh5DG097500
rosa_wichuraiana	Rw5G008900 Rw7G021620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	150
AcsI	RAATTY	1 cut(s)	215
AfiI	CCNNNNNNNGG	1 cut(s)	283
AgsI	TTSAA	3 cut(s)	95, 177, 240
AhlI	ACTAGT	1 cut(s)	104
AluBI	AGCT	1 cut(s)	337
AluI	AGCT	1 cut(s)	337
Alw26I	GTCTC	1 cut(s)	165
ApoI	RAATTY	1 cut(s)	215
Asp700I	GAANNNNTTC	1 cut(s)	215
AspS9I	GGNCC	2 cut(s)	20, 273
AsuC2I	CCSGG	1 cut(s)	284
AvaII	GGWCC	2 cut(s)	20, 273
BaeI	ACNNNNGTAYC	2 cut(s)	285, 318
BccI	CCATC	2 cut(s)	11, 325
BcnI	CCSGG	1 cut(s)	284
BcoDI	GTCTC	1 cut(s)	165
BcuI	ACTAGT	1 cut(s)	104
BfaI	CTAG	2 cut(s)	84, 105
Bme1390I	CCNGG	1 cut(s)	284
Bme18I	GGWCC	2 cut(s)	20, 273
BmgT120I	GGNCC	2 cut(s)	20, 273
BmiI	GGNNCC	1 cut(s)	275
BmrFI	CCNGG	1 cut(s)	284
BmsI	GCATC	2 cut(s)	40, 83
BpuMI	CCSGG	1 cut(s)	284
BsaI	GGTCTC	1 cut(s)	165
BsaWI	WCCGGW	1 cut(s)	326
BsaXI	ACNNNNNCTCC	2 cut(s)	291, 321
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
Bse1I	ACTGG	1 cut(s)	23
Bse3DI	GCAATG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	317
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	2 cut(s)	51, 176
BseNI	ACTGG	1 cut(s)	23
BsiSI	CCGG	2 cut(s)	284, 327
BslFI	GGGAC	1 cut(s)	259
BslI	CCNNNNNNNGG	1 cut(s)	283
BsmAI	GTCTC	1 cut(s)	165
BsmFI	GGGAC	1 cut(s)	259
Bso31I	GGTCTC	1 cut(s)	165
BspACI	CCGC	1 cut(s)	150
BspCNI	CTCAG	2 cut(s)	52, 175
BspLI	GGNNCC	1 cut(s)	275
BspTNI	GGTCTC	1 cut(s)	165
BsrDI	GCAATG	1 cut(s)	174
BsrI	ACTGG	1 cut(s)	23
Bst4CI	ACNGT	1 cut(s)	81
BstDEI	CTNAG	2 cut(s)	60, 162
BstF5I	GGATG	1 cut(s)	317
BstMAI	GTCTC	1 cut(s)	165
BstNSI	RCATGY	1 cut(s)	37
BstSCI	CCNGG	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	317
BtsIMutI	CAGTG	1 cut(s)	30
Cfr13I	GGNCC	2 cut(s)	20, 273
CviAII	CATG	2 cut(s)	34, 129
CviJI	RGCY	1 cut(s)	337
CviKI_1	RGCY	1 cut(s)	337
DdeI	CTNAG	2 cut(s)	60, 162
DraI	TTTAAA	1 cut(s)	139
Eco31I	GGTCTC	1 cut(s)	165
Eco47I	GGWCC	2 cut(s)	20, 273
EcoT22I	ATGCAT	1 cut(s)	76
FaeI	CATG	2 cut(s)	37, 132
FaiI	YATR	4 cut(s)	35, 72, 130, 234
FaqI	GGGAC	1 cut(s)	259
FatI	CATG	2 cut(s)	33, 128
FokI	GGATG	1 cut(s)	304
FspBI	CTAG	2 cut(s)	84, 105
HapII	CCGG	2 cut(s)	284, 327
Hin1II	CATG	2 cut(s)	37, 132
HincII	GTYRAC	1 cut(s)	185
HindII	GTYRAC	1 cut(s)	185
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	3 cut(s)	190, 352, 363
HpaII	CCGG	2 cut(s)	284, 327
Hpy166II	GTNNAC	2 cut(s)	185, 262
Hpy188I	TCNGA	2 cut(s)	145, 351
Hpy188III	TCNNGA	3 cut(s)	95, 240, 356
Hpy8I	GTNNAC	2 cut(s)	185, 262
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	1 cut(s)	81
HpyCH4V	TGCA	3 cut(s)	53, 74, 332
HpyF3I	CTNAG	2 cut(s)	60, 162
Hsp92II	CATG	2 cut(s)	37, 132
LpnPI	CCDG	7 cut(s)	36, 127, 149, 282, 297, 340, 369
LweI	GCATC	2 cut(s)	40, 83
MaeI	CTAG	2 cut(s)	84, 105
MaeIII	GTNAC	2 cut(s)	87, 248
MboII	GAAGA	2 cut(s)	77, 223
MluCI	AATT	5 cut(s)	153, 177, 215, 253, 375
MnlI	CCTC	4 cut(s)	48, 55, 201, 238
Mph1103I	ATGCAT	1 cut(s)	76
MroXI	GAANNNNTTC	1 cut(s)	215
MseI	TTAA	1 cut(s)	138
MspI	CCGG	2 cut(s)	284, 327
MspR9I	CCNGG	1 cut(s)	284
NciI	CCSGG	1 cut(s)	284
NlaIII	CATG	2 cut(s)	37, 132
NlaIV	GGNNCC	1 cut(s)	275
NsiI	ATGCAT	1 cut(s)	76
NspI	RCATGY	1 cut(s)	37
PdmI	GAANNNNTTC	1 cut(s)	215
PfeI	GAWTC	3 cut(s)	190, 352, 363
PspN4I	GGNNCC	1 cut(s)	275
PspPI	GGNCC	2 cut(s)	20, 273
SaqAI	TTAA	1 cut(s)	138
Sau96I	GGNCC	2 cut(s)	20, 273
ScrFI	CCNGG	1 cut(s)	284
SetI	ASST	2 cut(s)	89, 339
SfaNI	GCATC	2 cut(s)	40, 83
SinI	GGWCC	2 cut(s)	20, 273
SpeI	ACTAGT	1 cut(s)	104
Sse9I	AATT	5 cut(s)	153, 177, 215, 253, 375
SsiI	CCGC	1 cut(s)	150
SspMI	CTAG	2 cut(s)	84, 105
StyD4I	CCNGG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	81
TasI	AATT	5 cut(s)	153, 177, 215, 253, 375
TfiI	GAWTC	3 cut(s)	190, 352, 363
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	1 cut(s)	30
TspDTI	ATGAA	1 cut(s)	208
TspRI	CASTG	1 cut(s)	30
VpaK11BI	GGWCC	2 cut(s)	20, 273
XapI	RAATTY	1 cut(s)	215
XceI	RCATGY	1 cut(s)	37
XmnI	GAANNNNTTC	1 cut(s)	215
XspI	CTAG	2 cut(s)	84, 105
Zsp2I	ATGCAT	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.