Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002718

Physical Location & Seq

Genomic Coordinates Forward (+)

10614557 .. 10617150

Gene Structure 2594 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G179000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGGAGAAGCTCACCAGCTGCAACTCAGCATCATGGTTCATCATCAGGACGCAAATGGAGCAAACTCCAGAAGCATTCGCAACACATCGGTGCTTCCTCGGGGCAAAAGTTTCAACTGGTGGCTTAGAATGACCCTTTATACATGCCTAGTGCTCTCTGGCCAGTCAGTTGCAACACTCTTGGGAAGATTGTACTTCGACAAAGGCGGCCATAGCAATTGGCTGCAAGCCCTTATGAACCTTGCTGGCTTCCCCATCCTGCTTCCCTACTATTGCATCCCAGCACTTAGCAAAAGAAATAATCCAACCACAAACAGTGTTCAATCGGAACGGCCGCCGTCTACCTTAACCCTTGCATCAGTCTATGTCTCTCTTGGCCTCCTAGTAGCGTTTGGTTGCTTCTTGTATTCTGTAGGGCTATCATACCTTCCTGTGTCCACATATTCCCTCATCTGCGCATCCCAGTTGGCCTTCAATGCACTTTTCTCCTTCTTCCTCAACTCACAGAAGTTCACTCCTTACATTTTCAACGCTCTCTTCCTGCTCACCATCTCCTCCGTCCTCCTAGTGTTTCAAGGCGACTCTGACTCAGGCGCAGCCGGAGTAACCACCAAAAGAAAGTATGTAATTGGTTTCCTATGCACCGTTGCAGCATCAGCCTCGTATGGATTGACGCTTTCCCTAACACAGCTTGCATTCAGGAAGGTTATAAGAAAGGAAACATTTACAGCGGTCATGGACATGATAGTCTATCAGTCACTGATTGCAAGCTGCGCCATCTTCATAGGGCTTTTCGCTAGCGGAGAATGGAAAGGTTTGAAGAAAGAGATGGGGGAGTTTAAATCCGGGAAGGTATCTTATATCATGAACCTAACATGGTCAGCTATAGTATGGCAGCTGTTTGCTATTGGCGGAGTAGGGTTAATTTTTGAGGCATCTTCCCTCTTCTCCAATGTCGTCAGTGCTTTAGGTTTGCCTGTGGTTCCGGTTCTAGCTGTTATCTTCTTCCATGACAAAATGGACCGAATTAAGATAGTGGCCATGGTTTTGGCCATTTGGGGCTTTGTTTCATATCTTTATCAGCACTACCTCGACGATCGAAAGGCCAAGACTGCTGAGAATGAAAATGCCAATGGTGAGGTTTCTACAATTCTCCCACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUNUT

Protein Analysis

388

Amino Acids

42.55

Weight (kDa)

9.26

Isoelectric Point (pI)

27.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18195 AT4G18197 AT4G18205 AT4G18210 AT4G18220
fragaria_vesca	FvH4_3g06161 FvH4_3g06170 FvH4_3g06171
malus_domestica	MD05G1290000.v1.1 MD10G1265700.v1.1 MD10G1266100.v1.1 MD10G1266200.v1.1 MD16G1205700.v1.1
prunus_persica	Prupe.4G075600_v2.0.a1 Prupe.4G075700_v2.0.a1 Prupe.4G179000_v2.0.a1 Prupe.4G179000_v2.0.a1
pyrus_communis	pycom05g26700 pycom10g22160 pycom10g22190
rosa_chinensis	RchiOBHm_Chr2g0095021 RchiOBHm_Chr5g0011461 RchiOBHm_Chr5g0013171
rosa_laevigata	RLG00000020229 RLG00000031993
rosa_multiflora	Rmu_sc0003892.1_g000002 Rmu_sc0004521.1_g000002 Rmu_sc0004521.1_g000004
rosa_roxburghii	Rroxscaffold_1G00063430
rosa_rugosa	Rorug01G0225400 Rorug05G0007500 Rorug05G0007600 Rorug05G0007600 Rorug05G0007700
rosa_samantha	Rh5AG102000 Rh5BG098200 Rh5DG097500
rosa_wichuraiana	Rw5G008900 Rw7G021620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	710
AasI	GACNNNNNNGTC	1 cut(s)	746
Acc16I	TGCGCA	1 cut(s)	457
AccI	GTMKAC	1 cut(s)	341
AciI	CCGC	5 cut(s)	207, 335, 731, 801, 912
AcoI	YGGCCR	5 cut(s)	160, 208, 332, 1038, 1050
AfaI	GTAC	1 cut(s)	194
AgsI	TTSAA	6 cut(s)	115, 323, 475, 529, 575, 820
AleI	CACNNNNGTG	1 cut(s)	89
AluBI	AGCT	7 cut(s)	11, 19, 691, 771, 884, 898, 995
AluI	AGCT	7 cut(s)	11, 19, 691, 771, 884, 898, 995
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	1 cut(s)	373
AlwNI	CAGNNNCTG	1 cut(s)	760
Ama87I	CYCGRG	1 cut(s)	99
AoxI	GGCC	8 cut(s)	160, 208, 332, 376, 468, 1038, 1050, 1104
ApeKI	GCWGC	6 cut(s)	19, 223, 596, 650, 771, 895
AspLEI	GCGC	3 cut(s)	458, 596, 776
AspS9I	GGNCC	1 cut(s)	1021
AsuC2I	CCSGG	1 cut(s)	847
AsuHPI	GGTGA	3 cut(s)	5, 538, 1148
AsuNHI	GCTAGC	1 cut(s)	797
AvaI	CYCGRG	1 cut(s)	99
AvaII	GGWCC	1 cut(s)	1021
BalI	TGGCCA	3 cut(s)	162, 1040, 1052
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	6 cut(s)	6, 210, 608, 662, 758, 907
BccI	CCATC	4 cut(s)	263, 557, 785, 823
BceAI	ACGGC	2 cut(s)	322, 347
BcgI	CGANNNNNNTGC	2 cut(s)	642, 676
BcnI	CCSGG	1 cut(s)	847
BcoDI	GTCTC	1 cut(s)	373
BfaI	CTAG	5 cut(s)	149, 383, 566, 798, 992
BfmI	CTRYAG	2 cut(s)	411, 885
BisI	GCNGC	8 cut(s)	20, 208, 224, 335, 597, 651, 772, 896
BlsI	GCNGC	8 cut(s)	21, 209, 225, 336, 598, 652, 773, 897
Bme1390I	CCNGG	1 cut(s)	847
Bme18I	GGWCC	1 cut(s)	1021
BmeT110I	CYCGRG	1 cut(s)	99
BmgT120I	GGNCC	1 cut(s)	1021
BmiI	GGNNCC	1 cut(s)	984
BmrFI	CCNGG	1 cut(s)	847
BmrI	ACTGGG	1 cut(s)	457
BmsI	GCATC	6 cut(s)	39, 285, 365, 467, 662, 944
BmtI	GCTAGC	1 cut(s)	801
BmuI	ACTGGG	1 cut(s)	457
BpmI	CTGGAG	1 cut(s)	52
BpuMI	CCSGG	1 cut(s)	847
BsaJI	CCNNGG	2 cut(s)	98, 1041
BsaWI	WCCGGW	1 cut(s)	985
Bse1I	ACTGG	3 cut(s)	122, 163, 463
BseDI	CCNNGG	2 cut(s)	98, 1041
BseGI	GGATG	3 cut(s)	255, 276, 458
BseMII	CTCAG	3 cut(s)	40, 603, 1107
BseNI	ACTGG	3 cut(s)	122, 163, 463
BseRI	GAGGAG	1 cut(s)	544
BseX3I	CGGCCG	1 cut(s)	332
BseXI	GCAGC	6 cut(s)	6, 210, 608, 662, 758, 907
BseYI	CCCAGC	1 cut(s)	280
Bsh1285I	CGRYCG	2 cut(s)	335, 1099
BshFI	GGCC	8 cut(s)	162, 210, 334, 378, 470, 1040, 1052, 1106
BsiEI	CGRYCG	2 cut(s)	335, 1099
BsiHKAI	GWGCWC	1 cut(s)	156
BsiHKCI	CYCGRG	1 cut(s)	99
BsiSI	CCGG	3 cut(s)	600, 846, 986
BsmAI	GTCTC	1 cut(s)	373
BsmI	GAATGC	2 cut(s)	75, 695
BsnI	GGCC	8 cut(s)	162, 210, 334, 378, 470, 1040, 1052, 1106
BsoBI	CYCGRG	1 cut(s)	99
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp143I	GATC	1 cut(s)	1096
Bsp19I	CCATGG	1 cut(s)	1041
BspACI	CCGC	5 cut(s)	207, 335, 731, 801, 912
BspANI	GGCC	8 cut(s)	162, 210, 334, 378, 470, 1040, 1052, 1106
BspCNI	CTCAG	3 cut(s)	39, 602, 1108
BspHI	TCATGA	1 cut(s)	864
BspLI	GGNNCC	1 cut(s)	984
BspOI	GCTAGC	1 cut(s)	801
BsrI	ACTGG	3 cut(s)	122, 163, 463
BssECI	CCNNGG	2 cut(s)	98, 1041
BssMI	GATC	1 cut(s)	1096
BssT1I	CCWWGG	1 cut(s)	1041
Bst4CI	ACNGT	2 cut(s)	317, 646
Bst6I	CTCTTC	2 cut(s)	542, 950
BstC8I	GCNNGC	5 cut(s)	228, 247, 693, 769, 799
BstDEI	CTNAG	5 cut(s)	26, 125, 287, 589, 1116
BstDSI	CCRYGG	1 cut(s)	1041
BstF5I	GGATG	3 cut(s)	255, 276, 458
BstHHI	GCGC	3 cut(s)	458, 596, 776
BstKTI	GATC	1 cut(s)	1099
BstMAI	GTCTC	1 cut(s)	373
BstMBI	GATC	1 cut(s)	1096
BstMCI	CGRYCG	2 cut(s)	335, 1099
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 213, 476, 656, 773, 1112
BstNSI	RCATGY	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	845
BstSFI	CTRYAG	2 cut(s)	411, 885
BstV1I	GCAGC	6 cut(s)	6, 210, 608, 662, 758, 907
BstXI	CCANNNNNNTGG	1 cut(s)	1048
BstZI	CGGCCG	1 cut(s)	332
BsuRI	GGCC	8 cut(s)	162, 210, 334, 378, 470, 1040, 1052, 1106
BtgI	CCRYGG	1 cut(s)	1041
BtsCI	GGATG	3 cut(s)	255, 276, 458
BtsIMutI	CAGTG	3 cut(s)	322, 758, 967
Cac8I	GCNNGC	5 cut(s)	228, 247, 693, 769, 799
CaiI	CAGNNNCTG	1 cut(s)	760
CciI	TCATGA	1 cut(s)	864
CfoI	GCGC	3 cut(s)	458, 596, 776
Cfr13I	GGNCC	1 cut(s)	1021
CseI	GACGC	2 cut(s)	59, 682
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	8 cut(s)	34, 144, 736, 742, 865, 876, 1010, 1042
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	5 cut(s)	26, 125, 287, 589, 1116
DpnI	GATC	1 cut(s)	1098
DpnII	GATC	1 cut(s)	1096
DraI	TTTAAA	1 cut(s)	841
DrdI	GACNNNNNNGTC	1 cut(s)	746
DseDI	GACNNNNNNGTC	1 cut(s)	746
EaeI	YGGCCR	5 cut(s)	160, 208, 332, 1038, 1050
EagI	CGGCCG	1 cut(s)	332
Eam1104I	CTCTTC	2 cut(s)	542, 950
EarI	CTCTTC	2 cut(s)	542, 950
EciI	GGCGGA	1 cut(s)	927
EclXI	CGGCCG	1 cut(s)	332
Eco130I	CCWWGG	1 cut(s)	1041
Eco47I	GGWCC	1 cut(s)	1021
Eco52I	CGGCCG	1 cut(s)	332
Eco88I	CYCGRG	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	1041
ErhI	CCWWGG	1 cut(s)	1041
FaeI	CATG	8 cut(s)	37, 147, 739, 745, 868, 879, 1013, 1045
FatI	CATG	8 cut(s)	33, 143, 735, 741, 864, 875, 1009, 1041
FblI	GTMKAC	1 cut(s)	341
Fnu4HI	GCNGC	8 cut(s)	20, 208, 224, 335, 597, 651, 772, 896
FokI	GGATG	3 cut(s)	242, 263, 445
Fsp4HI	GCNGC	8 cut(s)	20, 208, 224, 335, 597, 651, 772, 896
FspBI	CTAG	5 cut(s)	149, 383, 566, 798, 992
FspI	TGCGCA	1 cut(s)	457
GlaI	GCGC	3 cut(s)	457, 595, 775
GluI	GCNGC	8 cut(s)	20, 208, 224, 335, 597, 651, 772, 896
GsaI	CCCAGC	1 cut(s)	284
GsuI	CTGGAG	1 cut(s)	52
HaeIII	GGCC	8 cut(s)	162, 210, 334, 378, 470, 1040, 1052, 1106
HapII	CCGG	3 cut(s)	600, 846, 986
HgaI	GACGC	2 cut(s)	59, 682
HhaI	GCGC	3 cut(s)	458, 596, 776
Hin1II	CATG	8 cut(s)	37, 147, 739, 745, 868, 879, 1013, 1045
Hin6I	GCGC	3 cut(s)	456, 594, 774
HinP1I	GCGC	3 cut(s)	456, 594, 774
HinfI	GANTC	2 cut(s)	581, 587
HpaII	CCGG	3 cut(s)	600, 846, 986
HphI	GGTGA	3 cut(s)	5, 538, 1148
Hpy166II	GTNNAC	3 cut(s)	342, 438, 513
Hpy188I	TCNGA	2 cut(s)	328, 586
Hpy188III	TCNNGA	4 cut(s)	47, 69, 700, 865
Hpy8I	GTNNAC	3 cut(s)	342, 438, 513
Hpy99I	CGWCG	1 cut(s)	1097
HpyAV	CCTTC	5 cut(s)	437, 481, 499, 697, 844
HpyCH4III	ACNGT	2 cut(s)	317, 646
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 213, 476, 656, 773, 1112
HpyF3I	CTNAG	5 cut(s)	26, 125, 287, 589, 1116
Hsp92II	CATG	8 cut(s)	37, 147, 739, 745, 868, 879, 1013, 1045
HspAI	GCGC	3 cut(s)	456, 594, 774
Kzo9I	GATC	1 cut(s)	1096
LmnI	GCTCC	1 cut(s)	59
Lsp1109I	GCAGC	6 cut(s)	6, 210, 608, 662, 758, 907
LweI	GCATC	6 cut(s)	39, 285, 365, 467, 662, 944
MaeI	CTAG	5 cut(s)	149, 383, 566, 798, 992
MaeIII	GTNAC	2 cut(s)	604, 756
MalI	GATC	1 cut(s)	1098
MboI	GATC	1 cut(s)	1096
MboII	GAAGA	9 cut(s)	198, 484, 529, 772, 832, 930, 937, 994, 997
MfeI	CAATTG	1 cut(s)	217
MhlI	GDGCHC	1 cut(s)	156
MlsI	TGGCCA	3 cut(s)	162, 1040, 1052
MluCI	AATT	5 cut(s)	217, 627, 924, 1026, 1149
MluNI	TGGCCA	3 cut(s)	162, 1040, 1052
MlyI	GAGTC	2 cut(s)	575, 581
MmeI	TCCRAC	1 cut(s)	329
Mox20I	TGGCCA	3 cut(s)	162, 1040, 1052
MscI	TGGCCA	3 cut(s)	162, 1040, 1052
MseI	TTAA	4 cut(s)	347, 840, 923, 1029
MslI	CAYNNNNRTG	2 cut(s)	89, 740
Msp20I	TGGCCA	3 cut(s)	162, 1040, 1052
MspA1I	CMGCKG	3 cut(s)	19, 731, 898
MspI	CCGG	3 cut(s)	600, 846, 986
MspR9I	CCNGG	1 cut(s)	847
MunI	CAATTG	1 cut(s)	217
Mva1269I	GAATGC	2 cut(s)	75, 695
MwoI	GCNNNNNNNGC	6 cut(s)	59, 213, 476, 656, 773, 1112
NciI	CCSGG	1 cut(s)	847
NcoI	CCATGG	1 cut(s)	1041
NdeII	GATC	1 cut(s)	1096
NheI	GCTAGC	1 cut(s)	797
NlaIII	CATG	8 cut(s)	37, 147, 739, 745, 868, 879, 1013, 1045
NlaIV	GGNNCC	1 cut(s)	984
NmuCI	GTSAC	1 cut(s)	756
NsbI	TGCGCA	1 cut(s)	457
NspI	RCATGY	1 cut(s)	147
OliI	CACNNNNGTG	1 cut(s)	89
PagI	TCATGA	1 cut(s)	864
PctI	GAATGC	2 cut(s)	75, 695
PfoI	TCCNGGA	1 cut(s)	845
PkrI	GCNGC	8 cut(s)	21, 209, 225, 336, 598, 652, 773, 897
Ple19I	CGATCG	1 cut(s)	1099
PleI	GAGTC	2 cut(s)	575, 581
PpsI	GAGTC	2 cut(s)	575, 581
PsiI	TTATAA	1 cut(s)	710
PspFI	CCCAGC	1 cut(s)	280
PspN4I	GGNNCC	1 cut(s)	984
PspPI	GGNCC	1 cut(s)	1021
PstNI	CAGNNNCTG	1 cut(s)	760
PvuI	CGATCG	1 cut(s)	1099
PvuII	CAGCTG	2 cut(s)	19, 898
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
RseI	CAYNNNNRTG	2 cut(s)	89, 740
SaqAI	TTAA	4 cut(s)	347, 840, 923, 1029
SatI	GCNGC	8 cut(s)	20, 208, 224, 335, 597, 651, 772, 896
Sau3AI	GATC	1 cut(s)	1096
Sau96I	GGNCC	1 cut(s)	1021
SchI	GAGTC	2 cut(s)	575, 581
ScrFI	CCNGG	1 cut(s)	847
SduI	GDGCHC	1 cut(s)	156
SfaNI	GCATC	6 cut(s)	39, 285, 365, 467, 662, 944
SfcI	CTRYAG	2 cut(s)	411, 885
SinI	GGWCC	1 cut(s)	1021
SmiMI	CAYNNNNRTG	2 cut(s)	89, 740
Sse9I	AATT	5 cut(s)	217, 627, 924, 1026, 1149
SsiI	CCGC	5 cut(s)	207, 335, 731, 801, 912
SspMI	CTAG	5 cut(s)	149, 383, 566, 798, 992
StyD4I	CCNGG	1 cut(s)	845
StyI	CCWWGG	1 cut(s)	1041
TaaI	ACNGT	2 cut(s)	317, 646
TaqI	TCGA	3 cut(s)	198, 1092, 1099
TaqII	GACCGA	1 cut(s)	1038
TasI	AATT	5 cut(s)	217, 627, 924, 1026, 1149
TatI	WGTACW	1 cut(s)	192
TauI	GCSGC	2 cut(s)	210, 337
Tru1I	TTAA	4 cut(s)	347, 840, 923, 1029
Tru9I	TTAA	4 cut(s)	347, 840, 923, 1029
TscAI	CASTG	3 cut(s)	322, 765, 967
TseFI	GTSAC	1 cut(s)	756
TseI	GCWGC	6 cut(s)	19, 223, 596, 650, 771, 895
Tsp45I	GTSAC	1 cut(s)	756
TspDTI	ATGAA	6 cut(s)	29, 251, 772, 881, 1059, 1137
TspGWI	ACGGA	1 cut(s)	547
TspRI	CASTG	3 cut(s)	322, 765, 967
VpaK11BI	GGWCC	1 cut(s)	1021
XceI	RCATGY	1 cut(s)	147
XmiI	GTMKAC	1 cut(s)	341
XspI	CTAG	5 cut(s)	149, 383, 566, 798, 992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.