Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002718

Physical Location & Seq

Genomic Coordinates Forward (+)

3706734 .. 3709287

Gene Structure 2554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G075600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGGAGAAGCTCAAGAACTGCAACTCAACATCATAGTCCAGGATTCACATGAAGCAAATCACCAAGGGTGCACAGATGTTCCTGAACAACCAATGCTTCCCCGGCGTAGAAATTTGAACTGGTGGCTTAGAATTTCCATTTATACACTGTTTGTCATCGCCGGCCAGTCAGCTGCAACACTTCTAGGAAGATTATACTATAACAAAGGTGGCAAAAGCAAATGTCTGGGAACACTAGTACAACTTGCTGGCTTCCCCATCCTCCTTCCCTACTATTGCATCCCAGCAAGCAGAAGAAACCCAACCACAAACATCACTACTAATAATATCCCATTGAAATCACCCTCTACCTTAATCCTTGCATCAATTTATGTCTCTCTTGGCCTTTTGGTAGCATTAGGCTGCTTCTTGTATTCTGTTGGCCTATCTCTCCTTCCTGTATCTACTTATTCTCTCATTTGTGCATCTCAACTAGTCTTCAATGCACTTTTCTCCTTCTTCCTCAACTCACAAAAGTTCACTCCCTACATTGTCAATTCTCTAGTTCTCCTCACCATCTCCTCCACCCTCCTTGTGTTCCAAGCCGGCGACTCTGCTGATGATCCAATTGGAGGCTCGAAAACAAAGTATGTGATTGGGTTTCTATGCACAGTTGGGGCATCAGCCGGATATGGATTAGTGCTTTCTCTAACACAGCTTGTCTTCAGAGAAGTTATAAGAAATGAGACATTTGCAGTGATCTTGGATATGATAGTGTATCAATCTCTAGTTGCAACCTGTGCTGTCTTGGTGGGACTTTTCGCCAGTGGAGAGTGGAGAGGTTTAAGGAAAGAGATGGAGGGGTTTGAATTAGGGAAGTTATCTTATGTCATGAACTTGACATGGTCAGCTATAATATGGCAGCTCTATGCTATTGGTGCAGTAGGGTTGATTTTTGAGGCCTCTTCTCTCTTCTCCAATGCCATAAGTGTTGTGGGTTTGCCTGTTGTTCCAGTTCTAGCTGTGATCTTCTTCCATGACAAAATGGATGGGATTAAGGCAATGGCCATGGTTTTGGGCATTTGGGGCTTTATTTCATATGTTTATCAGCTCTACCTTGATGACCGCAAGTCCAAGACACAGAGAAACAATGCCACTGGTGAAGTTTCTAAAGCTTTCCCACAGGAGAACATCAACGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUNUT

Protein Analysis

394

Amino Acids

43.05

Weight (kDa)

8.57

Isoelectric Point (pI)

36.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18195 AT4G18197 AT4G18205 AT4G18210 AT4G18220
fragaria_vesca	FvH4_3g06161 FvH4_3g06170 FvH4_3g06171
malus_domestica	MD05G1290000.v1.1 MD10G1265700.v1.1 MD10G1266100.v1.1 MD10G1266200.v1.1 MD16G1205700.v1.1
prunus_persica	Prupe.4G075600_v2.0.a1 Prupe.4G075700_v2.0.a1 Prupe.4G179000_v2.0.a1 Prupe.4G179000_v2.0.a1
pyrus_communis	pycom05g26700 pycom10g22160 pycom10g22190
rosa_chinensis	RchiOBHm_Chr2g0095021 RchiOBHm_Chr5g0011461 RchiOBHm_Chr5g0013171
rosa_laevigata	RLG00000020229 RLG00000031993
rosa_multiflora	Rmu_sc0003892.1_g000002 Rmu_sc0004521.1_g000002 Rmu_sc0004521.1_g000004
rosa_roxburghii	Rroxscaffold_1G00063430
rosa_rugosa	Rorug01G0225400 Rorug05G0007500 Rorug05G0007600 Rorug05G0007600 Rorug05G0007700
rosa_samantha	Rh5AG102000 Rh5BG098200 Rh5DG097500
rosa_wichuraiana	Rw5G008900 Rw7G021620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	716
AciI	CCGC	1 cut(s)	1105
AclWI	GGATC	1 cut(s)	596
AcoI	YGGCCR	2 cut(s)	163, 1044
AcsI	RAATTY	2 cut(s)	112, 132
AcuI	CTGAAG	1 cut(s)	688
AfaI	GTAC	1 cut(s)	240
AfiI	CCNNNNNNNGG	1 cut(s)	611
AgsI	TTSAA	4 cut(s)	118, 337, 481, 848
AhdI	GACNNNNNGTC	1 cut(s)	1108
AhlI	ACTAGT	2 cut(s)	235, 472
AjnI	CCWGG	1 cut(s)	39
AluBI	AGCT	8 cut(s)	11, 173, 697, 890, 904, 1001, 1090, 1154
AluI	AGCT	8 cut(s)	11, 173, 697, 890, 904, 1001, 1090, 1154
Alw21I	GWGCWC	1 cut(s)	74
Alw26I	GTCTC	2 cut(s)	379, 719
Alw44I	GTGCAC	1 cut(s)	70
AlwI	GGATC	1 cut(s)	596
AoxI	GGCC	5 cut(s)	163, 382, 421, 939, 1044
ApaLI	GTGCAC	1 cut(s)	70
ApeKI	GCWGC	3 cut(s)	173, 402, 901
ApoI	RAATTY	2 cut(s)	112, 132
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	4 cut(s)	53, 333, 544, 1151
BaeGI	GKGCMC	1 cut(s)	74
BalI	TGGCCA	1 cut(s)	1046
BbsI	GAAGAC	2 cut(s)	469, 694
Bbv12I	GWGCWC	1 cut(s)	74
BbvI	GCAGC	3 cut(s)	160, 389, 913
BccI	CCATC	4 cut(s)	266, 563, 829, 1022
BciT130I	CCWGG	1 cut(s)	41
BcnI	CCSGG	1 cut(s)	103
BcoDI	GTCTC	2 cut(s)	379, 719
BcuI	ACTAGT	2 cut(s)	235, 472
BfaI	CTAG	6 cut(s)	185, 236, 473, 542, 767, 998
BisI	GCNGC	3 cut(s)	174, 403, 902
BlsI	GCNGC	3 cut(s)	175, 404, 903
Bme1390I	CCNGG	2 cut(s)	41, 103
BmeRI	GACNNNNNGTC	1 cut(s)	1108
BmrFI	CCNGG	2 cut(s)	41, 103
BmsI	GCATC	4 cut(s)	288, 371, 473, 668
BpiI	GAAGAC	2 cut(s)	469, 694
BpuMI	CCSGG	1 cut(s)	103
BsaJI	CCNNGG	3 cut(s)	64, 101, 1047
Bsc4I	CCNNNNNNNGG	1 cut(s)	611
Bse118I	RCCGGY	2 cut(s)	161, 584
Bse1I	ACTGG	5 cut(s)	125, 166, 804, 992, 1141
Bse3DI	GCAATG	1 cut(s)	1047
BseBI	CCWGG	1 cut(s)	41
BseDI	CCNNGG	3 cut(s)	64, 101, 1047
BseGI	GGATG	3 cut(s)	258, 279, 1033
BseLI	CCNNNNNNNGG	1 cut(s)	611
BseMI	GCAATG	1 cut(s)	1047
BseNI	ACTGG	5 cut(s)	125, 166, 804, 992, 1141
BseRI	GAGGAG	2 cut(s)	539, 550
BseSI	GKGCMC	1 cut(s)	74
BseXI	GCAGC	3 cut(s)	160, 389, 913
BseYI	CCCAGC	1 cut(s)	283
BsgI	GTGCAG	1 cut(s)	939
BshFI	GGCC	5 cut(s)	165, 384, 423, 941, 1046
BsiHKAI	GWGCWC	1 cut(s)	74
BsiSI	CCGG	4 cut(s)	103, 162, 585, 666
BslFI	GGGAC	1 cut(s)	807
BslI	CCNNNNNNNGG	1 cut(s)	611
BsmAI	GTCTC	2 cut(s)	379, 719
BsmFI	GGGAC	1 cut(s)	807
BsnI	GGCC	5 cut(s)	165, 384, 423, 941, 1046
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp143I	GATC	3 cut(s)	601, 738, 1005
Bsp19I	CCATGG	1 cut(s)	1047
BspACI	CCGC	1 cut(s)	1105
BspANI	GGCC	5 cut(s)	165, 384, 423, 941, 1046
BspHI	TCATGA	1 cut(s)	870
BspPI	GGATC	1 cut(s)	596
BsrDI	GCAATG	1 cut(s)	1047
BsrFI	RCCGGY	2 cut(s)	161, 584
BsrI	ACTGG	5 cut(s)	125, 166, 804, 992, 1141
BssAI	RCCGGY	2 cut(s)	161, 584
BssECI	CCNNGG	3 cut(s)	64, 101, 1047
BssMI	GATC	3 cut(s)	601, 738, 1005
BssT1I	CCWWGG	2 cut(s)	64, 1047
Bst2UI	CCWGG	1 cut(s)	41
Bst4CI	ACNGT	3 cut(s)	150, 652, 1178
Bst6I	CTCTTC	2 cut(s)	949, 956
BstAPI	GCANNNNNTGC	1 cut(s)	779
BstC8I	GCNNGC	4 cut(s)	163, 250, 289, 586
BstDEI	CTNAG	1 cut(s)	128
BstDSI	CCRYGG	1 cut(s)	1047
BstF5I	GGATG	3 cut(s)	258, 279, 1033
BstKTI	GATC	3 cut(s)	604, 741, 1008
BstMAI	GTCTC	2 cut(s)	379, 719
BstMBI	GATC	3 cut(s)	601, 738, 1005
BstMWI	GCNNNNNNNGC	4 cut(s)	103, 779, 917, 1065
BstNI	CCWGG	1 cut(s)	41
BstSCI	CCNGG	2 cut(s)	39, 101
BstSLI	GKGCMC	1 cut(s)	74
BstV1I	GCAGC	3 cut(s)	160, 389, 913
BstV2I	GAAGAC	2 cut(s)	469, 694
BstXI	CCANNNNNNTGG	1 cut(s)	1054
BsuRI	GGCC	5 cut(s)	165, 384, 423, 941, 1046
BtgI	CCRYGG	1 cut(s)	1047
BtgZI	GCGATG	1 cut(s)	142
BtsCI	GGATG	3 cut(s)	258, 279, 1033
BtsI	GCAGTG	1 cut(s)	741
BtsIMutI	CAGTG	4 cut(s)	146, 741, 811, 1134
Cac8I	GCNNGC	4 cut(s)	163, 250, 289, 586
CciI	TCATGA	1 cut(s)	870
Cfr10I	RCCGGY	2 cut(s)	161, 584
Csp6I	GTAC	1 cut(s)	239
CspCI	CAANNNNNGTGG	2 cut(s)	553, 588
CviAII	CATG	5 cut(s)	50, 871, 882, 1016, 1048
CviQI	GTAC	1 cut(s)	239
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	3 cut(s)	603, 740, 1007
DpnII	GATC	3 cut(s)	601, 738, 1005
DriI	GACNNNNNGTC	1 cut(s)	1108
EaeI	YGGCCR	2 cut(s)	163, 1044
Eam1104I	CTCTTC	2 cut(s)	949, 956
Eam1105I	GACNNNNNGTC	1 cut(s)	1108
EarI	CTCTTC	2 cut(s)	949, 956
Eco130I	CCWWGG	2 cut(s)	64, 1047
Eco147I	AGGCCT	1 cut(s)	941
Eco57I	CTGAAG	1 cut(s)	688
EcoRII	CCWGG	1 cut(s)	39
EcoT14I	CCWWGG	2 cut(s)	64, 1047
ErhI	CCWWGG	2 cut(s)	64, 1047
FaeI	CATG	5 cut(s)	53, 874, 885, 1019, 1051
FaqI	GGGAC	1 cut(s)	807
FatI	CATG	5 cut(s)	49, 870, 881, 1015, 1047
FauNDI	CATATG	1 cut(s)	1078
Fnu4HI	GCNGC	3 cut(s)	174, 403, 902
FokI	GGATG	3 cut(s)	245, 266, 1040
Fsp4HI	GCNGC	3 cut(s)	174, 403, 902
FspBI	CTAG	6 cut(s)	185, 236, 473, 542, 767, 998
GluI	GCNGC	3 cut(s)	174, 403, 902
GsaI	CCCAGC	1 cut(s)	287
HaeIII	GGCC	5 cut(s)	165, 384, 423, 941, 1046
HapII	CCGG	4 cut(s)	103, 162, 585, 666
Hin1II	CATG	5 cut(s)	53, 874, 885, 1019, 1051
HindIII	AAGCTT	1 cut(s)	1152
HinfI	GANTC	2 cut(s)	44, 590
HpaII	CCGG	4 cut(s)	103, 162, 585, 666
HphI	GGTGA	4 cut(s)	53, 333, 544, 1151
Hpy166II	GTNNAC	2 cut(s)	72, 519
Hpy188I	TCNGA	1 cut(s)	707
Hpy188III	TCNNGA	3 cut(s)	14, 83, 871
Hpy8I	GTNNAC	2 cut(s)	72, 519
HpyAV	CCTTC	3 cut(s)	275, 443, 505
HpyCH4III	ACNGT	3 cut(s)	150, 652, 1178
HpyF10VI	GCNNNNNNNGC	4 cut(s)	103, 779, 917, 1065
HpyF3I	CTNAG	1 cut(s)	128
Hsp92II	CATG	5 cut(s)	53, 874, 885, 1019, 1051
KroI	GCCGGC	2 cut(s)	161, 584
KroNI	GCCGGC	2 cut(s)	163, 586
Kzo9I	GATC	3 cut(s)	601, 738, 1005
Lsp1109I	GCAGC	3 cut(s)	160, 389, 913
LweI	GCATC	4 cut(s)	288, 371, 473, 668
MaeI	CTAG	6 cut(s)	185, 236, 473, 542, 767, 998
MalI	GATC	3 cut(s)	603, 740, 1007
MboI	GATC	3 cut(s)	601, 738, 1005
MboII	GAAGA	9 cut(s)	201, 306, 469, 490, 694, 936, 943, 1000, 1003
MfeI	CAATTG	1 cut(s)	606
MhlI	GDGCHC	1 cut(s)	74
MlsI	TGGCCA	1 cut(s)	1046
MluCI	AATT	6 cut(s)	112, 132, 366, 535, 606, 848
MluNI	TGGCCA	1 cut(s)	1046
MlyI	GAGTC	1 cut(s)	584
Mox20I	TGGCCA	1 cut(s)	1046
MroNI	GCCGGC	2 cut(s)	161, 584
MscI	TGGCCA	1 cut(s)	1046
MseI	TTAA	3 cut(s)	353, 824, 1035
Msp20I	TGGCCA	1 cut(s)	1046
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	4 cut(s)	103, 162, 585, 666
MspR9I	CCNGG	2 cut(s)	41, 103
MunI	CAATTG	1 cut(s)	606
MvaI	CCWGG	1 cut(s)	41
MwoI	GCNNNNNNNGC	4 cut(s)	103, 779, 917, 1065
NaeI	GCCGGC	2 cut(s)	163, 586
NciI	CCSGG	1 cut(s)	103
NcoI	CCATGG	1 cut(s)	1047
NdeI	CATATG	1 cut(s)	1078
NdeII	GATC	3 cut(s)	601, 738, 1005
NgoMIV	GCCGGC	2 cut(s)	161, 584
NlaIII	CATG	5 cut(s)	53, 874, 885, 1019, 1051
PagI	TCATGA	1 cut(s)	870
PceI	AGGCCT	1 cut(s)	941
PdiI	GCCGGC	2 cut(s)	163, 586
PfeI	GAWTC	1 cut(s)	44
PflFI	GACNNNGTC	1 cut(s)	883
PfoI	TCCNGGA	1 cut(s)	39
PkrI	GCNGC	3 cut(s)	175, 404, 903
PleI	GAGTC	1 cut(s)	584
PpsI	GAGTC	1 cut(s)	584
PsiI	TTATAA	1 cut(s)	716
Psp6I	CCWGG	1 cut(s)	39
PspFI	CCCAGC	1 cut(s)	283
PspGI	CCWGG	1 cut(s)	39
PsyI	GACNNNGTC	1 cut(s)	883
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
SaqAI	TTAA	3 cut(s)	353, 824, 1035
SatI	GCNGC	3 cut(s)	174, 403, 902
Sau3AI	GATC	3 cut(s)	601, 738, 1005
SchI	GAGTC	1 cut(s)	584
ScrFI	CCNGG	2 cut(s)	41, 103
SduI	GDGCHC	1 cut(s)	74
SfaNI	GCATC	4 cut(s)	288, 371, 473, 668
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
SpeI	ACTAGT	2 cut(s)	235, 472
Sse9I	AATT	6 cut(s)	112, 132, 366, 535, 606, 848
SseBI	AGGCCT	1 cut(s)	941
SsiI	CCGC	1 cut(s)	1105
SspMI	CTAG	6 cut(s)	185, 236, 473, 542, 767, 998
StuI	AGGCCT	1 cut(s)	941
StyD4I	CCNGG	2 cut(s)	39, 101
StyI	CCWWGG	2 cut(s)	64, 1047
TaaI	ACNGT	3 cut(s)	150, 652, 1178
TaqI	TCGA	1 cut(s)	617
TasI	AATT	6 cut(s)	112, 132, 366, 535, 606, 848
TatI	WGTACW	1 cut(s)	238
TfiI	GAWTC	1 cut(s)	44
Tru1I	TTAA	3 cut(s)	353, 824, 1035
Tru9I	TTAA	3 cut(s)	353, 824, 1035
TscAI	CASTG	4 cut(s)	153, 741, 811, 1141
TseI	GCWGC	3 cut(s)	173, 402, 901
TspDTI	ATGAA	3 cut(s)	66, 887, 1065
TspRI	CASTG	4 cut(s)	153, 741, 811, 1141
Tth111I	GACNNNGTC	1 cut(s)	883
VneI	GTGCAC	1 cut(s)	70
XapI	RAATTY	2 cut(s)	112, 132
XcmI	CCANNNNNNNNNTGG	1 cut(s)	970
XspI	CTAG	6 cut(s)	185, 236, 473, 542, 767, 998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.