Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004521.1

Orthogroup ID

OG0002718

Physical Location & Seq

Genomic Coordinates Forward (+)

13206 .. 14870

Gene Structure 1665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004521.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

atgggagaagtggaagctcaagaactgcagctgagcatcatggttcaagcagaagcaaatgaagtaaactccctaccatatgttcctaaccagctgtctcggcgcagaggttttaactggtggcttagaatgtcgatttacagtgtgtttgtcctcgctggccagacaattgcaacactattgggaagacagtactatgaaaaaggtggtaaaagcaactggcttgctacactagtacaactttgtggctttcctatcctgcttcccttttatttcattccagcatcgaacaaaaactgtccaaccacaaatagtactatagcatttgagtcaaagccaccgtctacatcagtccttgcatcaatttatgcctctcttggcctccttatagcagcagactgctacttgtattcagtaggactatcttaccttcctgtatctacttactccctcatttgcgcatcccaactcgccttcaatgcgcttttctctttcttcctcaactcgcagaagtttactccttacattgtcaactctcttgttgtactgactatctcatccagcctcctagtgcttcaaggagacgactctgctgactcgagtaaagtttccaggtcaaagtacataataggcttcatctgcaccgttggggcatcggctggatatgcattgacactttctctgacgcagctagtcttcataaaggttataaagaaagaaacatttagagtgatcatggacttgatagtgtttcaatcagtcttttcaaccgctattatcttggtgggattttttgctagtggagactggaagggtataaaggatgagatggagggatttgagttagggaaggtttcctatattatgaatttaacatggacagctatagtgtggcagctctttaccattggaatagtggggttggtatttgaggcgtcgtccctcttctcaaattctataagtgctgtgggattgcctattgttccagttctagctgtgatcttcttccatgacaaaatggatgggataaaggtaatgtccatggttttggctatctggggatttatttcatatgtttatcagcactacctcgatgatcgtaagttcaagagtgagaagaaagctgccaatgacgaagtttctaaagcttttgcacaggaaaacattaatggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUNUT

Protein Analysis

391

Amino Acids

43.21

Weight (kDa)

7.54

Isoelectric Point (pI)

31.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18195 AT4G18197 AT4G18205 AT4G18210 AT4G18220
fragaria_vesca	FvH4_3g06161 FvH4_3g06170 FvH4_3g06171
malus_domestica	MD05G1290000.v1.1 MD10G1265700.v1.1 MD10G1266100.v1.1 MD10G1266200.v1.1 MD16G1205700.v1.1
prunus_persica	Prupe.4G075600_v2.0.a1 Prupe.4G075700_v2.0.a1 Prupe.4G179000_v2.0.a1 Prupe.4G179000_v2.0.a1
pyrus_communis	pycom05g26700 pycom10g22160 pycom10g22190
rosa_chinensis	RchiOBHm_Chr2g0095021 RchiOBHm_Chr5g0011461 RchiOBHm_Chr5g0013171
rosa_laevigata	RLG00000020229 RLG00000031993
rosa_multiflora	Rmu_sc0003892.1_g000002 Rmu_sc0004521.1_g000002 Rmu_sc0004521.1_g000004
rosa_roxburghii	Rroxscaffold_1G00063430
rosa_rugosa	Rorug01G0225400 Rorug05G0007500 Rorug05G0007600 Rorug05G0007600 Rorug05G0007700
rosa_samantha	Rh5AG102000 Rh5BG098200 Rh5DG097500
rosa_wichuraiana	Rw5G008900 Rw7G021620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	710
Acc16I	TGCGCA	1 cut(s)	460
AccI	GTMKAC	1 cut(s)	344
AciI	CCGC	1 cut(s)	771
AcoI	YGGCCR	1 cut(s)	160
AcsI	RAATTY	2 cut(s)	868, 952
AcyI	GRCGYC	1 cut(s)	935
AfaI	GTAC	5 cut(s)	194, 237, 316, 546, 623
AgsI	TTSAA	6 cut(s)	47, 478, 578, 755, 768, 1108
AhlI	ACTAGT	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	611
AluBI	AGCT	9 cut(s)	17, 31, 94, 691, 884, 898, 995, 1124, 1148
AluI	AGCT	9 cut(s)	17, 31, 94, 691, 884, 898, 995, 1124, 1148
Alw26I	GTCTC	3 cut(s)	102, 576, 798
Ama87I	CYCGRG	1 cut(s)	598
AoxI	GGCC	2 cut(s)	160, 379
ApeKI	GCWGC	5 cut(s)	28, 392, 688, 895, 1124
ApoI	RAATTY	2 cut(s)	868, 952
ArsI	GACNNNNNNTTYG	2 cut(s)	326, 358
AseI	ATTAAT	1 cut(s)	1167
AspLEI	GCGC	3 cut(s)	105, 461, 484
AvaI	CYCGRG	1 cut(s)	598
BalI	TGGCCA	1 cut(s)	162
BbsI	GAAGAC	2 cut(s)	193, 688
BbvI	GCAGC	5 cut(s)	40, 404, 700, 907, 1111
BccI	CCATC	2 cut(s)	823, 1016
BciT130I	CCWGG	1 cut(s)	613
BclI	TGATCA	1 cut(s)	732
BcoDI	GTCTC	3 cut(s)	102, 576, 798
BcuI	ACTAGT	1 cut(s)	232
BfaI	CTAG	5 cut(s)	233, 569, 692, 798, 992
BfmI	CTRYAG	3 cut(s)	26, 318, 885
BisI	GCNGC	5 cut(s)	29, 393, 689, 896, 1125
BlpI	GCTNAGC	1 cut(s)	32
BlsI	GCNGC	5 cut(s)	30, 394, 690, 897, 1126
BmcAI	AGTACT	2 cut(s)	194, 316
Bme1390I	CCNGG	1 cut(s)	613
BmeT110I	CYCGRG	1 cut(s)	598
BmrFI	CCNGG	1 cut(s)	613
BmsI	GCATC	5 cut(s)	45, 293, 368, 470, 662
BpiI	GAAGAC	2 cut(s)	193, 688
Bpu1102I	GCTNAGC	1 cut(s)	32
BsaHI	GRCGYC	1 cut(s)	935
BsaJI	CCNNGG	1 cut(s)	1041
Bse1I	ACTGG	4 cut(s)	122, 224, 812, 986
BseBI	CCWGG	1 cut(s)	613
BseDI	CCNNGG	1 cut(s)	1041
BseGI	GGATG	4 cut(s)	461, 557, 829, 1027
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	4 cut(s)	122, 224, 812, 986
BseXI	GCAGC	5 cut(s)	40, 404, 700, 907, 1111
BsgI	GTGCAG	1 cut(s)	625
BshFI	GGCC	2 cut(s)	162, 381
BsiHKCI	CYCGRG	1 cut(s)	598
BslFI	GGGAC	1 cut(s)	925
BsmAI	GTCTC	3 cut(s)	102, 576, 798
BsmBI	CGTCTC	1 cut(s)	576
BsmFI	GGGAC	1 cut(s)	925
BsnI	GGCC	2 cut(s)	162, 381
BsoBI	CYCGRG	1 cut(s)	598
Bsp143I	GATC	3 cut(s)	732, 999, 1096
Bsp1720I	GCTNAGC	1 cut(s)	32
Bsp19I	CCATGG	1 cut(s)	1041
BspACI	CCGC	1 cut(s)	771
BspANI	GGCC	2 cut(s)	162, 381
BspCNI	CTCAG	1 cut(s)	24
BspMAI	CTGCAG	1 cut(s)	30
BsrI	ACTGG	4 cut(s)	122, 224, 812, 986
BssECI	CCNNGG	1 cut(s)	1041
BssMI	GATC	3 cut(s)	732, 999, 1096
BssNI	GRCGYC	1 cut(s)	935
BssT1I	CCWWGG	1 cut(s)	1041
Bst2UI	CCWGG	1 cut(s)	613
Bst4CI	ACNGT	5 cut(s)	143, 192, 299, 342, 646
Bst6I	CTCTTC	1 cut(s)	950
BstACI	GRCGYC	1 cut(s)	935
BstC8I	GCNNGC	2 cut(s)	160, 225
BstDEI	CTNAG	2 cut(s)	32, 125
BstDSI	CCRYGG	1 cut(s)	1041
BstF5I	GGATG	4 cut(s)	461, 557, 829, 1027
BstHHI	GCGC	3 cut(s)	105, 461, 484
BstKTI	GATC	3 cut(s)	735, 1002, 1099
BstMAI	GTCTC	3 cut(s)	102, 576, 798
BstMBI	GATC	3 cut(s)	732, 999, 1096
BstMWI	GCNNNNNNNGC	4 cut(s)	100, 479, 639, 665
BstNI	CCWGG	1 cut(s)	613
BstSCI	CCNGG	1 cut(s)	611
BstSFI	CTRYAG	3 cut(s)	26, 318, 885
BstV1I	GCAGC	5 cut(s)	40, 404, 700, 907, 1111
BstV2I	GAAGAC	2 cut(s)	193, 688
BstXI	CCANNNNNNTGG	1 cut(s)	1048
BsuRI	GGCC	2 cut(s)	162, 381
BtgI	CCRYGG	1 cut(s)	1041
BtsCI	GGATG	4 cut(s)	461, 557, 829, 1027
BtsIMutI	CAGTG	1 cut(s)	148
Cac8I	GCNNGC	2 cut(s)	160, 225
CfoI	GCGC	3 cut(s)	105, 461, 484
CseI	GACGC	2 cut(s)	694, 924
Csp6I	GTAC	5 cut(s)	193, 236, 315, 545, 622
CviAII	CATG	5 cut(s)	40, 736, 876, 1010, 1042
CviQI	GTAC	5 cut(s)	193, 236, 315, 545, 622
DdeI	CTNAG	2 cut(s)	32, 125
DpnI	GATC	3 cut(s)	734, 1001, 1098
DpnII	GATC	3 cut(s)	732, 999, 1096
EaeI	YGGCCR	1 cut(s)	160
Eam1104I	CTCTTC	1 cut(s)	950
EarI	CTCTTC	1 cut(s)	950
Eco130I	CCWWGG	1 cut(s)	1041
Eco88I	CYCGRG	1 cut(s)	598
EcoRII	CCWGG	1 cut(s)	611
EcoT14I	CCWWGG	1 cut(s)	1041
EcoT22I	ATGCAT	1 cut(s)	670
ErhI	CCWWGG	1 cut(s)	1041
Esp3I	CGTCTC	1 cut(s)	576
FaeI	CATG	5 cut(s)	43, 739, 879, 1013, 1045
FaqI	GGGAC	1 cut(s)	925
FatI	CATG	5 cut(s)	39, 735, 875, 1009, 1041
FauNDI	CATATG	2 cut(s)	79, 1072
FbaI	TGATCA	1 cut(s)	732
FblI	GTMKAC	1 cut(s)	344
Fnu4HI	GCNGC	5 cut(s)	29, 393, 689, 896, 1125
FokI	GGATG	4 cut(s)	448, 544, 836, 1034
Fsp4HI	GCNGC	5 cut(s)	29, 393, 689, 896, 1125
FspBI	CTAG	5 cut(s)	233, 569, 692, 798, 992
FspI	TGCGCA	1 cut(s)	460
GlaI	GCGC	3 cut(s)	104, 460, 483
GluI	GCNGC	5 cut(s)	29, 393, 689, 896, 1125
HaeIII	GGCC	2 cut(s)	162, 381
HgaI	GACGC	2 cut(s)	694, 924
HhaI	GCGC	3 cut(s)	105, 461, 484
Hin1I	GRCGYC	1 cut(s)	935
Hin1II	CATG	5 cut(s)	43, 739, 879, 1013, 1045
Hin6I	GCGC	3 cut(s)	103, 459, 482
HinP1I	GCGC	3 cut(s)	103, 459, 482
HincII	GTYRAC	1 cut(s)	532
HindII	GTYRAC	1 cut(s)	532
HindIII	AAGCTT	1 cut(s)	1146
HinfI	GANTC	3 cut(s)	329, 587, 596
Hpy166II	GTNNAC	4 cut(s)	67, 345, 516, 532
Hpy188I	TCNGA	1 cut(s)	684
Hpy188III	TCNNGA	2 cut(s)	20, 1108
Hpy8I	GTNNAC	4 cut(s)	67, 345, 516, 532
Hpy99I	CGWCG	1 cut(s)	940
HpyAV	CCTTC	4 cut(s)	440, 484, 805, 844
HpyCH4III	ACNGT	5 cut(s)	143, 192, 299, 342, 646
HpyCH4V	TGCA	6 cut(s)	28, 173, 359, 642, 668, 1154
HpyF10VI	GCNNNNNNNGC	4 cut(s)	100, 479, 639, 665
HpyF3I	CTNAG	2 cut(s)	32, 125
Hsp92I	GRCGYC	1 cut(s)	935
Hsp92II	CATG	5 cut(s)	43, 739, 879, 1013, 1045
HspAI	GCGC	3 cut(s)	103, 459, 482
Ksp22I	TGATCA	1 cut(s)	732
Kzo9I	GATC	3 cut(s)	732, 999, 1096
Lsp1109I	GCAGC	5 cut(s)	40, 404, 700, 907, 1111
LweI	GCATC	5 cut(s)	45, 293, 368, 470, 662
MaeI	CTAG	5 cut(s)	233, 569, 692, 798, 992
MalI	GATC	3 cut(s)	734, 1001, 1098
MboI	GATC	3 cut(s)	732, 999, 1096
MboII	GAAGA	7 cut(s)	198, 487, 688, 937, 994, 997, 1129
MfeI	CAATTG	1 cut(s)	168
MlsI	TGGCCA	1 cut(s)	162
MluCI	AATT	4 cut(s)	168, 363, 868, 952
MluNI	TGGCCA	1 cut(s)	162
MlyI	GAGTC	3 cut(s)	338, 581, 590
MmeI	TCCRAC	1 cut(s)	326
Mox20I	TGGCCA	1 cut(s)	162
Mph1103I	ATGCAT	1 cut(s)	670
MscI	TGGCCA	1 cut(s)	162
MseI	TTAA	3 cut(s)	114, 872, 1167
Msp20I	TGGCCA	1 cut(s)	162
MspA1I	CMGCKG	2 cut(s)	31, 94
MspR9I	CCNGG	1 cut(s)	613
MunI	CAATTG	1 cut(s)	168
MvaI	CCWGG	1 cut(s)	613
MwoI	GCNNNNNNNGC	4 cut(s)	100, 479, 639, 665
NcoI	CCATGG	1 cut(s)	1041
NdeI	CATATG	2 cut(s)	79, 1072
NdeII	GATC	3 cut(s)	732, 999, 1096
NlaIII	CATG	5 cut(s)	43, 739, 879, 1013, 1045
NmeAIII	GCCGAG	1 cut(s)	79
NsbI	TGCGCA	1 cut(s)	460
NsiI	ATGCAT	1 cut(s)	670
PaeR7I	CTCGAG	1 cut(s)	598
PkrI	GCNGC	5 cut(s)	30, 394, 690, 897, 1126
PleI	GAGTC	3 cut(s)	337, 581, 590
PpsI	GAGTC	3 cut(s)	337, 581, 590
PshBI	ATTAAT	1 cut(s)	1167
PsiI	TTATAA	1 cut(s)	710
Psp6I	CCWGG	1 cut(s)	611
PspGI	CCWGG	1 cut(s)	611
PspXI	VCTCGAGB	1 cut(s)	598
PstI	CTGCAG	1 cut(s)	30
PvuII	CAGCTG	2 cut(s)	31, 94
RsaI	GTAC	5 cut(s)	194, 237, 316, 546, 623
RsaNI	GTAC	5 cut(s)	193, 236, 315, 545, 622
SaqAI	TTAA	3 cut(s)	114, 872, 1167
SatI	GCNGC	5 cut(s)	29, 393, 689, 896, 1125
Sau3AI	GATC	3 cut(s)	732, 999, 1096
ScaI	AGTACT	2 cut(s)	194, 316
SchI	GAGTC	3 cut(s)	338, 581, 590
ScrFI	CCNGG	1 cut(s)	613
SfaNI	GCATC	5 cut(s)	45, 293, 368, 470, 662
SfcI	CTRYAG	3 cut(s)	26, 318, 885
Sfr274I	CTCGAG	1 cut(s)	598
SlaI	CTCGAG	1 cut(s)	598
SmlI	CTYRAG	2 cut(s)	18, 598
SmoI	CTYRAG	2 cut(s)	18, 598
SpeI	ACTAGT	1 cut(s)	232
Sse9I	AATT	4 cut(s)	168, 363, 868, 952
SsiI	CCGC	1 cut(s)	771
SspMI	CTAG	5 cut(s)	233, 569, 692, 798, 992
StyD4I	CCNGG	1 cut(s)	611
StyI	CCWWGG	1 cut(s)	1041
TaaI	ACNGT	5 cut(s)	143, 192, 299, 342, 646
TaqI	TCGA	4 cut(s)	134, 287, 599, 1092
TasI	AATT	4 cut(s)	168, 363, 868, 952
TatI	WGTACW	5 cut(s)	192, 235, 314, 544, 621
Tru1I	TTAA	3 cut(s)	114, 872, 1167
Tru9I	TTAA	3 cut(s)	114, 872, 1167
TscAI	CASTG	1 cut(s)	148
TseI	GCWGC	5 cut(s)	28, 392, 688, 895, 1124
TspDTI	ATGAA	7 cut(s)	75, 213, 265, 625, 688, 881, 1059
TspRI	CASTG	1 cut(s)	148
VspI	ATTAAT	1 cut(s)	1167
XapI	RAATTY	2 cut(s)	868, 952
XcmI	CCANNNNNNNNNTGG	1 cut(s)	913
XhoI	CTCGAG	1 cut(s)	598
XmiI	GTMKAC	1 cut(s)	344
XspI	CTAG	5 cut(s)	233, 569, 692, 798, 992
ZrmI	AGTACT	2 cut(s)	194, 316
Zsp2I	ATGCAT	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.