Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002718

Physical Location & Seq

Genomic Coordinates Forward (+)

3709288 .. 3711492

Gene Structure 2205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G075700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGGAGAAGCACAAGAACTGCAGCTCAGCATCATGGCTCAGGAAGCAAATGAAGCAAGCTCACCAGGGCATACAAATGTTCCCAACCGGTCACTGCTTCCTCGGCGCAGAAGTTTCAACTGGTGGCTTAGAGTGGCCATTTATGCATTCCTTGTCATCGCTGGCCAGTCAGTTGCAACACTCTTGGGAAGATTGTACTTCGACAAAGGCGGTGACAGCAAATGGCTGGCAACAGTGGTACAACTTTGTGGCTTTCCTGTCCTGCTGCCCTACTATTGCATCCCAGCAGCAAGCAGAAATCCAATCACAAAAAATAGTACTGTCCAATTCAAACCACAGTCCACCTTAATCCTTGCATCAGTATATGGCTGTATTGGCCTCTTAGGAGCATTGGACTGCTACTTGTATTCTGTAGGCCTAGCTTACCTTCCTGTGTCTACTTATTCCCTCATTTGTGCATCCCAATTGGCCTTCAATGCACTTTTCTCCTTCCTCCTCAACTCACAAAAGTTCACTCCCTACATTGTCAATTCTCTAGTTCTCCTCACCATCTCCTCCACCCTCCTCGTGTTTCAAGGCGACTCTGGGGATGACCCTAGTGGAGGATCGAAAACAAAGTATGCAATCGGGTTCATATGCACCGTTGGGGCATCAGCCGGATATGGATTGGTGCTTTCCCTAACACAACTTGCCTTCAAAAGGGTTATAAGAAAGGAGACATTTAGAGTGGTCATGGATATGATAGTGTATGAATCTCTACTTGCAACCTGTGTCATCATGGTCGGGCTTTTCGCTAGCGGAGAGTGGAAGGGTTTGAAGAAAGAGATGGGGATGTACAAACTAGGGACGGTATCCTATGTTATGAATTTGGTATGGACAGCTATAACATGGCAGCTTTTTAATATTGGCGCAATAGGCTTGATTTTGGAGGCCTCTTCCCTCTTCTCCAATGCCATAAGTGCTATGGGTTTGCCTGTTGTTCCAGTTCTAGCTGTGATCTTCTTCCACGACAAAATGGATGGAATTAAGGCAATGGCCATGATTTTGGCCATTTGGGGCTTTATTTCTTATGCTTATCAGCACTACCTTGATGATCGTAAGTCCAAGAATGAGAACAAAAATGTCAATGGTGAAGTTTCTAAAGCTTCATCACTGGAAAAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUNUT

Protein Analysis

389

Amino Acids

42.46

Weight (kDa)

9.0

Isoelectric Point (pI)

35.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18195 AT4G18197 AT4G18205 AT4G18210 AT4G18220
fragaria_vesca	FvH4_3g06161 FvH4_3g06170 FvH4_3g06171
malus_domestica	MD05G1290000.v1.1 MD10G1265700.v1.1 MD10G1266100.v1.1 MD10G1266200.v1.1 MD16G1205700.v1.1
prunus_persica	Prupe.4G075600_v2.0.a1 Prupe.4G075700_v2.0.a1 Prupe.4G179000_v2.0.a1 Prupe.4G179000_v2.0.a1
pyrus_communis	pycom05g26700 pycom10g22160 pycom10g22190
rosa_chinensis	RchiOBHm_Chr2g0095021 RchiOBHm_Chr5g0011461 RchiOBHm_Chr5g0013171
rosa_laevigata	RLG00000020229 RLG00000031993
rosa_multiflora	Rmu_sc0003892.1_g000002 Rmu_sc0004521.1_g000002 Rmu_sc0004521.1_g000004
rosa_roxburghii	Rroxscaffold_1G00063430
rosa_rugosa	Rorug01G0225400 Rorug05G0007500 Rorug05G0007600 Rorug05G0007600 Rorug05G0007700
rosa_samantha	Rh5AG102000 Rh5BG098200 Rh5DG097500
rosa_wichuraiana	Rw5G008900 Rw7G021620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	707
AccI	GTMKAC	1 cut(s)	437
AciI	CCGC	2 cut(s)	210, 798
AclWI	GGATC	1 cut(s)	613
AcoI	YGGCCR	4 cut(s)	135, 163, 1035, 1047
AcsI	RAATTY	1 cut(s)	865
AfaI	GTAC	4 cut(s)	197, 240, 319, 836
AfiI	CCNNNNNNNGG	2 cut(s)	602, 699
AgeI	ACCGGT	1 cut(s)	87
AgsI	TTSAA	6 cut(s)	118, 331, 475, 575, 697, 817
AjnI	CCWGG	1 cut(s)	64
AluBI	AGCT	7 cut(s)	25, 60, 422, 881, 895, 992, 1145
AluI	AGCT	7 cut(s)	25, 60, 422, 881, 895, 992, 1145
Alw26I	GTCTC	1 cut(s)	710
AlwI	GGATC	1 cut(s)	613
AoxI	GGCC	8 cut(s)	135, 163, 376, 415, 468, 930, 1035, 1047
ApeKI	GCWGC	4 cut(s)	22, 265, 287, 892
ApoI	RAATTY	1 cut(s)	865
AsiGI	ACCGGT	1 cut(s)	87
AspLEI	GCGC	2 cut(s)	108, 911
AsuHPI	GGTGA	4 cut(s)	54, 224, 538, 1142
AsuNHI	GCTAGC	1 cut(s)	794
BalI	TGGCCA	4 cut(s)	137, 165, 1037, 1049
BauI	CACGAG	1 cut(s)	566
BbvI	GCAGC	4 cut(s)	34, 252, 299, 904
BccI	CCATC	3 cut(s)	557, 820, 1013
BciT130I	CCWGG	1 cut(s)	66
BciVI	GTATCC	1 cut(s)	862
BcoDI	GTCTC	1 cut(s)	710
BfaI	CTAG	6 cut(s)	419, 536, 597, 795, 842, 989
BfmI	CTRYAG	2 cut(s)	20, 411
BfuI	GTATCC	1 cut(s)	862
BisI	GCNGC	4 cut(s)	23, 266, 288, 893
BlpI	GCTNAGC	1 cut(s)	26
BlsI	GCNGC	4 cut(s)	24, 267, 289, 894
BmcAI	AGTACT	1 cut(s)	319
Bme1390I	CCNGG	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	66
BmsI	GCATC	5 cut(s)	39, 288, 365, 467, 659
BmtI	GCTAGC	1 cut(s)	798
Bpu10I	CCTNAGC	1 cut(s)	39
Bpu1102I	GCTNAGC	1 cut(s)	26
BsaJI	CCNNGG	2 cut(s)	65, 101
BsaWI	WCCGGW	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	2 cut(s)	602, 699
Bse118I	RCCGGY	1 cut(s)	87
Bse1I	ACTGG	4 cut(s)	125, 166, 983, 1158
Bse3DI	GCAATG	1 cut(s)	1038
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	2 cut(s)	65, 101
BseGI	GGATG	5 cut(s)	279, 458, 595, 837, 1024
BseLI	CCNNNNNNNGG	2 cut(s)	602, 699
BseMI	GCAATG	1 cut(s)	1038
BseMII	CTCAG	2 cut(s)	40, 53
BseNI	ACTGG	4 cut(s)	125, 166, 983, 1158
BseRI	GAGGAG	4 cut(s)	485, 533, 544, 554
BseXI	GCAGC	4 cut(s)	34, 252, 299, 904
BseYI	CCCAGC	1 cut(s)	283
BshFI	GGCC	8 cut(s)	137, 165, 378, 417, 470, 932, 1037, 1049
BshTI	ACCGGT	1 cut(s)	87
BsiSI	CCGG	2 cut(s)	88, 657
BslFI	GGGAC	1 cut(s)	859
BslI	CCNNNNNNNGG	2 cut(s)	602, 699
BsmAI	GTCTC	1 cut(s)	710
BsmFI	GGGAC	1 cut(s)	859
BsmI	GAATGC	1 cut(s)	146
BsnI	GGCC	8 cut(s)	137, 165, 378, 417, 470, 932, 1037, 1049
Bsp1407I	TGTACA	1 cut(s)	834
Bsp143I	GATC	3 cut(s)	605, 996, 1093
Bsp1720I	GCTNAGC	1 cut(s)	26
BspACI	CCGC	2 cut(s)	210, 798
BspANI	GGCC	8 cut(s)	137, 165, 378, 417, 470, 932, 1037, 1049
BspCNI	CTCAG	2 cut(s)	39, 52
BspMAI	CTGCAG	1 cut(s)	24
BspOI	GCTAGC	1 cut(s)	798
BspPI	GGATC	1 cut(s)	613
BsrDI	GCAATG	1 cut(s)	1038
BsrFI	RCCGGY	1 cut(s)	87
BsrGI	TGTACA	1 cut(s)	834
BsrI	ACTGG	4 cut(s)	125, 166, 983, 1158
BssAI	RCCGGY	1 cut(s)	87
BssECI	CCNNGG	2 cut(s)	65, 101
BssMI	GATC	3 cut(s)	605, 996, 1093
BssSI	CACGAG	1 cut(s)	566
Bst2BI	CACGAG	1 cut(s)	566
Bst2UI	CCWGG	1 cut(s)	66
Bst4CI	ACNGT	5 cut(s)	235, 322, 339, 643, 850
Bst6I	CTCTTC	2 cut(s)	940, 947
BstAUI	TGTACA	1 cut(s)	834
BstC8I	GCNNGC	5 cut(s)	58, 163, 228, 292, 796
BstDEI	CTNAG	4 cut(s)	26, 39, 128, 382
BstENI	CCTNNNNNAGG	2 cut(s)	600, 697
BstF5I	GGATG	5 cut(s)	279, 458, 595, 837, 1024
BstHHI	GCGC	2 cut(s)	108, 911
BstKTI	GATC	3 cut(s)	608, 999, 1096
BstMAI	GTCTC	1 cut(s)	710
BstMBI	GATC	3 cut(s)	605, 996, 1093
BstMWI	GCNNNNNNNGC	9 cut(s)	44, 53, 103, 143, 216, 375, 476, 915, 959
BstNI	CCWGG	1 cut(s)	66
BstSCI	CCNGG	1 cut(s)	64
BstSFI	CTRYAG	2 cut(s)	20, 411
BstV1I	GCAGC	4 cut(s)	34, 252, 299, 904
BstXI	CCANNNNNNTGG	1 cut(s)	1045
BsuI	GTATCC	1 cut(s)	862
BsuRI	GGCC	8 cut(s)	137, 165, 378, 417, 470, 932, 1037, 1049
BtgZI	GCGATG	1 cut(s)	142
BtsCI	GGATG	5 cut(s)	279, 458, 595, 837, 1024
BtsI	GCAGTG	1 cut(s)	92
BtsIMutI	CAGTG	3 cut(s)	92, 240, 1151
Cac8I	GCNNGC	5 cut(s)	58, 163, 228, 292, 796
CfoI	GCGC	2 cut(s)	108, 911
Cfr10I	RCCGGY	1 cut(s)	87
Csp6I	GTAC	4 cut(s)	196, 239, 318, 835
CspAI	ACCGGT	1 cut(s)	87
CviAII	CATG	5 cut(s)	34, 733, 778, 888, 1039
CviQI	GTAC	4 cut(s)	196, 239, 318, 835
DdeI	CTNAG	4 cut(s)	26, 39, 128, 382
DpnI	GATC	3 cut(s)	607, 998, 1095
DpnII	GATC	3 cut(s)	605, 996, 1093
EaeI	YGGCCR	4 cut(s)	135, 163, 1035, 1047
Eam1104I	CTCTTC	2 cut(s)	940, 947
EarI	CTCTTC	2 cut(s)	940, 947
Eco147I	AGGCCT	2 cut(s)	417, 932
EcoNI	CCTNNNNNAGG	2 cut(s)	600, 697
EcoRII	CCWGG	1 cut(s)	64
EcoT22I	ATGCAT	1 cut(s)	148
FaeI	CATG	5 cut(s)	37, 736, 781, 891, 1042
FaqI	GGGAC	1 cut(s)	859
FatI	CATG	5 cut(s)	33, 732, 777, 887, 1038
FauNDI	CATATG	1 cut(s)	635
FblI	GTMKAC	1 cut(s)	437
Fnu4HI	GCNGC	4 cut(s)	23, 266, 288, 893
FokI	GGATG	5 cut(s)	266, 445, 602, 844, 1031
Fsp4HI	GCNGC	4 cut(s)	23, 266, 288, 893
FspBI	CTAG	6 cut(s)	419, 536, 597, 795, 842, 989
GlaI	GCGC	2 cut(s)	107, 910
GluI	GCNGC	4 cut(s)	23, 266, 288, 893
GsaI	CCCAGC	1 cut(s)	287
HaeIII	GGCC	8 cut(s)	137, 165, 378, 417, 470, 932, 1037, 1049
HapII	CCGG	2 cut(s)	88, 657
HhaI	GCGC	2 cut(s)	108, 911
Hin1II	CATG	5 cut(s)	37, 736, 781, 891, 1042
Hin6I	GCGC	2 cut(s)	106, 909
HinP1I	GCGC	2 cut(s)	106, 909
HindIII	AAGCTT	1 cut(s)	1143
HinfI	GANTC	2 cut(s)	581, 752
HpaII	CCGG	2 cut(s)	88, 657
HphI	GGTGA	4 cut(s)	54, 224, 538, 1142
Hpy166II	GTNNAC	3 cut(s)	342, 438, 513
Hpy188III	TCNNGA	1 cut(s)	41
Hpy8I	GTNNAC	3 cut(s)	342, 438, 513
HpyAV	CCTTC	5 cut(s)	437, 481, 499, 703, 802
HpyCH4III	ACNGT	5 cut(s)	235, 322, 339, 643, 850
HpyF10VI	GCNNNNNNNGC	9 cut(s)	44, 53, 103, 143, 216, 375, 476, 915, 959
HpyF3I	CTNAG	4 cut(s)	26, 39, 128, 382
Hsp92II	CATG	5 cut(s)	37, 736, 781, 891, 1042
HspAI	GCGC	2 cut(s)	106, 909
Kzo9I	GATC	3 cut(s)	605, 996, 1093
LmnI	GCTCC	1 cut(s)	386
Lsp1109I	GCAGC	4 cut(s)	34, 252, 299, 904
LweI	GCATC	5 cut(s)	39, 288, 365, 467, 659
MaeI	CTAG	6 cut(s)	419, 536, 597, 795, 842, 989
MaeIII	GTNAC	2 cut(s)	90, 212
MalI	GATC	3 cut(s)	607, 998, 1095
MboI	GATC	3 cut(s)	605, 996, 1093
MboII	GAAGA	6 cut(s)	201, 829, 927, 934, 991, 994
MfeI	CAATTG	1 cut(s)	464
MlsI	TGGCCA	4 cut(s)	137, 165, 1037, 1049
MluCI	AATT	6 cut(s)	326, 464, 529, 865, 1023, 1162
MluNI	TGGCCA	4 cut(s)	137, 165, 1037, 1049
MlyI	GAGTC	1 cut(s)	575
Mox20I	TGGCCA	4 cut(s)	137, 165, 1037, 1049
Mph1103I	ATGCAT	1 cut(s)	148
MscI	TGGCCA	4 cut(s)	137, 165, 1037, 1049
MseI	TTAA	4 cut(s)	347, 900, 1026, 1165
MslI	CAYNNNNRTG	2 cut(s)	75, 737
Msp20I	TGGCCA	4 cut(s)	137, 165, 1037, 1049
MspI	CCGG	2 cut(s)	88, 657
MspR9I	CCNGG	1 cut(s)	66
MunI	CAATTG	1 cut(s)	464
Mva1269I	GAATGC	1 cut(s)	146
MvaI	CCWGG	1 cut(s)	66
MwoI	GCNNNNNNNGC	9 cut(s)	44, 53, 103, 143, 216, 375, 476, 915, 959
NdeI	CATATG	1 cut(s)	635
NdeII	GATC	3 cut(s)	605, 996, 1093
NheI	GCTAGC	1 cut(s)	794
NlaIII	CATG	5 cut(s)	37, 736, 781, 891, 1042
NmeAIII	GCCGAG	1 cut(s)	82
NmuCI	GTSAC	2 cut(s)	90, 212
NsiI	ATGCAT	1 cut(s)	148
PceI	AGGCCT	2 cut(s)	417, 932
PctI	GAATGC	1 cut(s)	146
PfeI	GAWTC	1 cut(s)	752
PinAI	ACCGGT	1 cut(s)	87
PkrI	GCNGC	4 cut(s)	24, 267, 289, 894
PleI	GAGTC	1 cut(s)	575
PpsI	GAGTC	1 cut(s)	575
PsiI	TTATAA	1 cut(s)	707
Psp6I	CCWGG	1 cut(s)	64
PspFI	CCCAGC	1 cut(s)	283
PspGI	CCWGG	1 cut(s)	64
PstI	CTGCAG	1 cut(s)	24
RsaI	GTAC	4 cut(s)	197, 240, 319, 836
RsaNI	GTAC	4 cut(s)	196, 239, 318, 835
RseI	CAYNNNNRTG	2 cut(s)	75, 737
SaqAI	TTAA	4 cut(s)	347, 900, 1026, 1165
SatI	GCNGC	4 cut(s)	23, 266, 288, 893
Sau3AI	GATC	3 cut(s)	605, 996, 1093
ScaI	AGTACT	1 cut(s)	319
SchI	GAGTC	1 cut(s)	575
ScrFI	CCNGG	1 cut(s)	66
SfaNI	GCATC	5 cut(s)	39, 288, 365, 467, 659
SfcI	CTRYAG	2 cut(s)	20, 411
SmiMI	CAYNNNNRTG	2 cut(s)	75, 737
Sse9I	AATT	6 cut(s)	326, 464, 529, 865, 1023, 1162
SseBI	AGGCCT	2 cut(s)	417, 932
SsiI	CCGC	2 cut(s)	210, 798
SspI	AATATT	1 cut(s)	904
SspMI	CTAG	6 cut(s)	419, 536, 597, 795, 842, 989
StuI	AGGCCT	2 cut(s)	417, 932
StyD4I	CCNGG	1 cut(s)	64
TaaI	ACNGT	5 cut(s)	235, 322, 339, 643, 850
TaqI	TCGA	2 cut(s)	201, 608
TasI	AATT	6 cut(s)	326, 464, 529, 865, 1023, 1162
TatI	WGTACW	3 cut(s)	195, 317, 834
TfiI	GAWTC	1 cut(s)	752
Tru1I	TTAA	4 cut(s)	347, 900, 1026, 1165
Tru9I	TTAA	4 cut(s)	347, 900, 1026, 1165
TscAI	CASTG	3 cut(s)	99, 240, 1158
TseFI	GTSAC	2 cut(s)	90, 212
TseI	GCWGC	4 cut(s)	22, 265, 287, 892
Tsp45I	GTSAC	2 cut(s)	90, 212
TspDTI	ATGAA	5 cut(s)	66, 622, 765, 878, 1137
TspRI	CASTG	3 cut(s)	99, 240, 1158
XagI	CCTNNNNNAGG	2 cut(s)	600, 697
XapI	RAATTY	1 cut(s)	865
XcmI	CCANNNNNNNNNTGG	1 cut(s)	961
XmiI	GTMKAC	1 cut(s)	437
XspI	CTAG	6 cut(s)	419, 536, 597, 795, 842, 989
ZrmI	AGTACT	1 cut(s)	319
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.