Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004521.1

Orthogroup ID

OG0002718

Physical Location & Seq

Genomic Coordinates Forward (+)

19966 .. 21641

Gene Structure 1676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004521.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

atgggagcattagaagctcaagaacggcagctgagcatcaaggttcaagcagaagcaaatgaagcaaactccctaccatatattcctaaccagctgccttggtgcagaggttttaactggtggcttagaatgtcgatttatacagtctttgtcctcgctggccaggcaattgcaacactattgggaagacagtactatgacaaaggtggtaaaagcaactggcttgctacactagtacaactttgtggctttcctatcttccttccgtattattgcattccagcattgaacaaaaactgtccaaccacaaacagtactatagcaatcgagtcaaagccaccgtctatattagtccttgcatcaatttattcctctcttggctcccttatagcagcagactactacttgtattcagtaggactatcttaccttcctgtatctactttctccctcatttctgcatcccaactcaccttcaatgcacttttctccttcttcctcaactcgcagaagttaacttttttaattgtcaactctctttttatactgaccatctcatccagcctcctagtgcttcaagcagaccactcagcagactcgagtaaagtttccaggtcaaagtacataataggctttgcctgcactgttggggcatcggctggatatgcattgacactttctctaacgcagctagtcttcataaaggttataagaaaagaaacatttagagtgatcatggatatgacagtgtatacatcagtcattgcaaccgctattatcttggtgggactttttgctagtggagaccagaagggtctaaagcatgagatggaggatttcattctagctgtgatcttcttccatgaaaaaatggatgggctaaaggcaatgtccctggttttggctatgtggggttttatttcatatgtttatcagcactacctcgatgatcgtaagtccaagagtgagaagaaagatgccaatgatgaagtttctaaagctgtccctgtggaaaatattaatgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUNUT

Protein Analysis

342

Amino Acids

37.92

Weight (kDa)

8.44

Isoelectric Point (pI)

35.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18195 AT4G18197 AT4G18205 AT4G18210 AT4G18220
fragaria_vesca	FvH4_3g06161 FvH4_3g06170 FvH4_3g06171
malus_domestica	MD05G1290000.v1.1 MD10G1265700.v1.1 MD10G1266100.v1.1 MD10G1266200.v1.1 MD16G1205700.v1.1
prunus_persica	Prupe.4G075600_v2.0.a1 Prupe.4G075700_v2.0.a1 Prupe.4G179000_v2.0.a1 Prupe.4G179000_v2.0.a1
pyrus_communis	pycom05g26700 pycom10g22160 pycom10g22190
rosa_chinensis	RchiOBHm_Chr2g0095021 RchiOBHm_Chr5g0011461 RchiOBHm_Chr5g0013171
rosa_laevigata	RLG00000020229 RLG00000031993
rosa_multiflora	Rmu_sc0003892.1_g000002 Rmu_sc0004521.1_g000002 Rmu_sc0004521.1_g000004
rosa_roxburghii	Rroxscaffold_1G00063430
rosa_rugosa	Rorug01G0225400 Rorug05G0007500 Rorug05G0007600 Rorug05G0007600 Rorug05G0007700
rosa_samantha	Rh5AG102000 Rh5BG098200 Rh5DG097500
rosa_wichuraiana	Rw5G008900 Rw7G021620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	710
AccI	GTMKAC	1 cut(s)	752
AciI	CCGC	1 cut(s)	771
AcoI	YGGCCR	1 cut(s)	160
AfaI	GTAC	4 cut(s)	194, 237, 316, 623
AfiI	CCNNNNNNNGG	1 cut(s)	901
AgsI	TTSAA	4 cut(s)	47, 289, 478, 578
AhlI	ACTAGT	1 cut(s)	232
AjnI	CCWGG	3 cut(s)	162, 611, 894
AluBI	AGCT	6 cut(s)	17, 31, 94, 691, 848, 1001
AluI	AGCT	6 cut(s)	17, 31, 94, 691, 848, 1001
Alw26I	GTCTC	1 cut(s)	798
Ama87I	CYCGRG	1 cut(s)	598
AoxI	GGCC	1 cut(s)	160
ApeKI	GCWGC	4 cut(s)	28, 94, 392, 688
ArsI	GACNNNNNNTTYG	2 cut(s)	326, 358
AseI	ATTAAT	1 cut(s)	1020
AsuHPI	GGTGA	1 cut(s)	463
AvaI	CYCGRG	1 cut(s)	598
BalI	TGGCCA	1 cut(s)	162
BbsI	GAAGAC	2 cut(s)	193, 688
BbvI	GCAGC	4 cut(s)	40, 81, 404, 700
BccI	CCATC	3 cut(s)	560, 823, 869
BceAI	ACGGC	1 cut(s)	41
BciT130I	CCWGG	3 cut(s)	164, 613, 896
BclI	TGATCA	1 cut(s)	732
BcoDI	GTCTC	1 cut(s)	798
BcuI	ACTAGT	1 cut(s)	232
BfaI	CTAG	5 cut(s)	233, 569, 692, 798, 845
BfmI	CTRYAG	1 cut(s)	318
BisI	GCNGC	4 cut(s)	29, 95, 393, 689
BlpI	GCTNAGC	1 cut(s)	32
BlsI	GCNGC	4 cut(s)	30, 96, 394, 690
BmcAI	AGTACT	2 cut(s)	194, 316
Bme1390I	CCNGG	3 cut(s)	164, 613, 896
BmeT110I	CYCGRG	1 cut(s)	598
BmiI	GGNNCC	1 cut(s)	382
BmrFI	CCNGG	3 cut(s)	164, 613, 896
BmsI	GCATC	5 cut(s)	45, 368, 470, 662, 967
BpiI	GAAGAC	2 cut(s)	193, 688
Bpu1102I	GCTNAGC	1 cut(s)	32
BsaI	GGTCTC	1 cut(s)	798
BsaJI	CCNNGG	2 cut(s)	98, 894
Bsc4I	CCNNNNNNNGG	1 cut(s)	901
Bse1I	ACTGG	2 cut(s)	122, 224
Bse3DI	GCAATG	2 cut(s)	762, 894
BseBI	CCWGG	3 cut(s)	164, 613, 896
BseDI	CCNNGG	2 cut(s)	98, 894
BseGI	GGATG	3 cut(s)	461, 557, 880
BseLI	CCNNNNNNNGG	1 cut(s)	901
BseMI	GCAATG	2 cut(s)	762, 894
BseMII	CTCAG	2 cut(s)	23, 603
BseNI	ACTGG	2 cut(s)	122, 224
BseXI	GCAGC	4 cut(s)	40, 81, 404, 700
BsgI	GTGCAG	2 cut(s)	124, 625
BshFI	GGCC	1 cut(s)	162
BsiHKCI	CYCGRG	1 cut(s)	598
BslFI	GGGAC	3 cut(s)	801, 877, 989
BslI	CCNNNNNNNGG	1 cut(s)	901
BsmAI	GTCTC	1 cut(s)	798
BsmFI	GGGAC	3 cut(s)	801, 877, 989
BsmI	GAATGC	1 cut(s)	276
BsnI	GGCC	1 cut(s)	162
Bso31I	GGTCTC	1 cut(s)	798
BsoBI	CYCGRG	1 cut(s)	598
Bsp143I	GATC	3 cut(s)	732, 852, 949
Bsp1720I	GCTNAGC	1 cut(s)	32
BspACI	CCGC	1 cut(s)	771
BspANI	GGCC	1 cut(s)	162
BspCNI	CTCAG	2 cut(s)	24, 602
BspLI	GGNNCC	1 cut(s)	382
BspTNI	GGTCTC	1 cut(s)	798
BsrDI	GCAATG	2 cut(s)	762, 894
BsrI	ACTGG	2 cut(s)	122, 224
BssECI	CCNNGG	2 cut(s)	98, 894
BssMI	GATC	3 cut(s)	732, 852, 949
BssNAI	GTATAC	1 cut(s)	753
BssT1I	CCWWGG	1 cut(s)	98
Bst1107I	GTATAC	1 cut(s)	753
Bst2UI	CCWGG	3 cut(s)	164, 613, 896
Bst4CI	ACNGT	7 cut(s)	145, 192, 299, 314, 342, 646, 748
BstC8I	GCNNGC	3 cut(s)	160, 225, 640
BstDEI	CTNAG	3 cut(s)	32, 125, 589
BstF5I	GGATG	3 cut(s)	461, 557, 880
BstKTI	GATC	3 cut(s)	735, 855, 952
BstMAI	GTCTC	1 cut(s)	798
BstMBI	GATC	3 cut(s)	732, 852, 949
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 62, 164, 639, 665
BstNI	CCWGG	3 cut(s)	164, 613, 896
BstSCI	CCNGG	3 cut(s)	162, 611, 894
BstSFI	CTRYAG	1 cut(s)	318
BstV1I	GCAGC	4 cut(s)	40, 81, 404, 700
BstV2I	GAAGAC	2 cut(s)	193, 688
BstZ17I	GTATAC	1 cut(s)	753
BsuRI	GGCC	1 cut(s)	162
BtsCI	GGATG	3 cut(s)	461, 557, 880
BtsIMutI	CAGTG	2 cut(s)	642, 753
Cac8I	GCNNGC	3 cut(s)	160, 225, 640
Csp6I	GTAC	4 cut(s)	193, 236, 315, 622
CviAII	CATG	3 cut(s)	736, 824, 863
CviQI	GTAC	4 cut(s)	193, 236, 315, 622
DdeI	CTNAG	3 cut(s)	32, 125, 589
DpnI	GATC	3 cut(s)	734, 854, 951
DpnII	GATC	3 cut(s)	732, 852, 949
EaeI	YGGCCR	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	98
Eco31I	GGTCTC	1 cut(s)	798
Eco88I	CYCGRG	1 cut(s)	598
EcoRII	CCWGG	3 cut(s)	162, 611, 894
EcoT14I	CCWWGG	1 cut(s)	98
EcoT22I	ATGCAT	1 cut(s)	670
ErhI	CCWWGG	1 cut(s)	98
FaeI	CATG	3 cut(s)	739, 827, 866
FaqI	GGGAC	3 cut(s)	801, 877, 989
FatI	CATG	3 cut(s)	735, 823, 862
FauNDI	CATATG	1 cut(s)	925
FbaI	TGATCA	1 cut(s)	732
FblI	GTMKAC	1 cut(s)	752
Fnu4HI	GCNGC	4 cut(s)	29, 95, 393, 689
FokI	GGATG	3 cut(s)	448, 544, 887
Fsp4HI	GCNGC	4 cut(s)	29, 95, 393, 689
FspBI	CTAG	5 cut(s)	233, 569, 692, 798, 845
GluI	GCNGC	4 cut(s)	29, 95, 393, 689
HaeIII	GGCC	1 cut(s)	162
Hin1II	CATG	3 cut(s)	739, 827, 866
HincII	GTYRAC	2 cut(s)	516, 532
HindII	GTYRAC	2 cut(s)	516, 532
HinfI	GANTC	2 cut(s)	329, 596
HpaI	GTTAAC	1 cut(s)	516
HphI	GGTGA	1 cut(s)	463
Hpy166II	GTNNAC	3 cut(s)	516, 532, 753
Hpy188III	TCNNGA	1 cut(s)	20
Hpy8I	GTNNAC	3 cut(s)	516, 532, 753
HpyAV	CCTTC	5 cut(s)	272, 440, 484, 502, 805
HpyCH4III	ACNGT	7 cut(s)	145, 192, 299, 314, 342, 646, 748
HpyCH4V	TGCA	9 cut(s)	105, 173, 276, 359, 461, 482, 642, 668, 767
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 62, 164, 639, 665
HpyF3I	CTNAG	3 cut(s)	32, 125, 589
Hsp92II	CATG	3 cut(s)	739, 827, 866
Ksp22I	TGATCA	1 cut(s)	732
KspAI	GTTAAC	1 cut(s)	516
Kzo9I	GATC	3 cut(s)	732, 852, 949
LmnI	GCTCC	2 cut(s)	5, 386
Lsp1109I	GCAGC	4 cut(s)	40, 81, 404, 700
LweI	GCATC	5 cut(s)	45, 368, 470, 662, 967
MaeI	CTAG	5 cut(s)	233, 569, 692, 798, 845
MalI	GATC	3 cut(s)	734, 854, 951
MboI	GATC	3 cut(s)	732, 852, 949
MboII	GAAGA	7 cut(s)	198, 250, 487, 688, 847, 850, 982
MfeI	CAATTG	1 cut(s)	168
MlsI	TGGCCA	1 cut(s)	162
MluCI	AATT	3 cut(s)	168, 363, 525
MluNI	TGGCCA	1 cut(s)	162
MlyI	GAGTC	2 cut(s)	338, 590
MmeI	TCCRAC	1 cut(s)	326
MnlI	CCTC	8 cut(s)	101, 164, 382, 461, 509, 575, 826, 953
Mox20I	TGGCCA	1 cut(s)	162
Mph1103I	ATGCAT	1 cut(s)	670
MscI	TGGCCA	1 cut(s)	162
MseI	TTAA	4 cut(s)	114, 515, 524, 1020
MslI	CAYNNNNRTG	1 cut(s)	740
Msp20I	TGGCCA	1 cut(s)	162
MspA1I	CMGCKG	2 cut(s)	31, 94
MspR9I	CCNGG	3 cut(s)	164, 613, 896
MunI	CAATTG	1 cut(s)	168
Mva1269I	GAATGC	1 cut(s)	276
MvaI	CCWGG	3 cut(s)	164, 613, 896
MwoI	GCNNNNNNNGC	5 cut(s)	14, 62, 164, 639, 665
NdeI	CATATG	1 cut(s)	925
NdeII	GATC	3 cut(s)	732, 852, 949
NlaIII	CATG	3 cut(s)	739, 827, 866
NlaIV	GGNNCC	1 cut(s)	382
NsiI	ATGCAT	1 cut(s)	670
PaeR7I	CTCGAG	1 cut(s)	598
PctI	GAATGC	1 cut(s)	276
PkrI	GCNGC	4 cut(s)	30, 96, 394, 690
PleI	GAGTC	2 cut(s)	337, 590
PpsI	GAGTC	2 cut(s)	337, 590
PshBI	ATTAAT	1 cut(s)	1020
PsiI	TTATAA	1 cut(s)	710
Psp6I	CCWGG	3 cut(s)	162, 611, 894
PspGI	CCWGG	3 cut(s)	162, 611, 894
PspN4I	GGNNCC	1 cut(s)	382
PspXI	VCTCGAGB	1 cut(s)	598
PvuII	CAGCTG	2 cut(s)	31, 94
RsaI	GTAC	4 cut(s)	194, 237, 316, 623
RsaNI	GTAC	4 cut(s)	193, 236, 315, 622
RseI	CAYNNNNRTG	1 cut(s)	740
SaqAI	TTAA	4 cut(s)	114, 515, 524, 1020
SatI	GCNGC	4 cut(s)	29, 95, 393, 689
Sau3AI	GATC	3 cut(s)	732, 852, 949
ScaI	AGTACT	2 cut(s)	194, 316
SchI	GAGTC	2 cut(s)	338, 590
ScrFI	CCNGG	3 cut(s)	164, 613, 896
SfaNI	GCATC	5 cut(s)	45, 368, 470, 662, 967
SfcI	CTRYAG	1 cut(s)	318
Sfr274I	CTCGAG	1 cut(s)	598
SlaI	CTCGAG	1 cut(s)	598
SmiMI	CAYNNNNRTG	1 cut(s)	740
SmlI	CTYRAG	2 cut(s)	18, 598
SmoI	CTYRAG	2 cut(s)	18, 598
SpeI	ACTAGT	1 cut(s)	232
Sse9I	AATT	3 cut(s)	168, 363, 525
SsiI	CCGC	1 cut(s)	771
SspI	AATATT	1 cut(s)	1018
SspMI	CTAG	5 cut(s)	233, 569, 692, 798, 845
StyD4I	CCNGG	3 cut(s)	162, 611, 894
StyI	CCWWGG	1 cut(s)	98
TaaI	ACNGT	7 cut(s)	145, 192, 299, 314, 342, 646, 748
TaqI	TCGA	4 cut(s)	134, 327, 599, 945
TasI	AATT	3 cut(s)	168, 363, 525
TatI	WGTACW	4 cut(s)	192, 235, 314, 621
Tru1I	TTAA	4 cut(s)	114, 515, 524, 1020
Tru9I	TTAA	4 cut(s)	114, 515, 524, 1020
TscAI	CASTG	2 cut(s)	649, 753
TseI	GCWGC	4 cut(s)	28, 94, 392, 688
TspDTI	ATGAA	6 cut(s)	75, 688, 829, 879, 912, 1002
TspGWI	ACGGA	1 cut(s)	255
TspRI	CASTG	2 cut(s)	649, 753
VspI	ATTAAT	1 cut(s)	1020
XhoI	CTCGAG	1 cut(s)	598
XmiI	GTMKAC	1 cut(s)	752
XspI	CTAG	5 cut(s)	233, 569, 692, 798, 845
ZrmI	AGTACT	2 cut(s)	194, 316
Zsp2I	ATGCAT	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.