FvH4_3g06220

Coatomer subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0002186
Physical Location & Seq
Forward (+)
3575488 .. 3577143
1656 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g06220.t1

Sequence Viewer

Length: 555 bp
ATGGAGTGTATCTTCGGTTACCGTGATTCACGCCCATCTGTGAAGAACATTCTTCTTATGGACTCTGAAGGGAAGCGTGTGGCGGTCAAGTATTACTCGGATGATTGGCCAACAAATGGTGCAAAGCTAGTTTTTGAAAAATCTGTGTTCACTAAGACTCTTAAGACAAATGCAAGGATTGAATCGGAGATAATGATGTTCGAAAGCAACGTTGTTGTATATAGGTTTATGCAGGACCTTCACTTCTTTGTGACTGGAAGTGACGATGAAAACGAACTCATTTTAGCCACTGTCCTTCAGGGATTCTTTGATGCAGTTGCCCTTCTCTTGAGGAACAATGTTGATAAAAGGGAGGCACTGGAGAACCTAGATCTCATACTTCTGTGCTTTGATGAGATTGTTGATGGAGGGATGATACTTGAAACAGATCCAACTATTATCGCAGGAAAGGTGGCAACTCATACCATGGATGCTGATGCACCATTGGCTGAGCAGACTATAACTCAAGCATGGGCTGTTGCAAGAGAACATTTAACCAGAACCCTTCTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Clat_adaptor_s

Protein Analysis

185

Amino Acids

20.83

Weight (kDa)

4.75

Isoelectric Point (pI)

29.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clat_adaptor_s PF01217 14 - 153 2.3e-22 Clathrin adaptor complex small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 116
AciI CCGC 1 cut(s) 83
AclI AACGTT 1 cut(s) 210
AclWI GGATC 1 cut(s) 422
AcoI YGGCCR 1 cut(s) 107
AcuI CTGAAG 2 cut(s) 87, 281
AfiI CCNNNNNNNGG 1 cut(s) 116
AflII CTTAAG 1 cut(s) 161
AgsI TTSAA 3 cut(s) 137, 182, 422
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
AlwI GGATC 1 cut(s) 422
AoxI GGCC 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 235
AsuII TTCGAA 1 cut(s) 201
AvaII GGWCC 1 cut(s) 235
BalI TGGCCA 1 cut(s) 109
BccI CCATC 2 cut(s) 43, 398
BfaI CTAG 2 cut(s) 128, 368
BfrI CTTAAG 1 cut(s) 161
BglII AGATCT 1 cut(s) 370
BlpI GCTNAGC 1 cut(s) 489
Bme18I GGWCC 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 235
BmsI GCATC 3 cut(s) 301, 460, 466
BpmI CTGGAG 1 cut(s) 380
Bpu1102I GCTNAGC 1 cut(s) 489
Bpu14I TTCGAA 1 cut(s) 201
BpuEI CTTGAG 2 cut(s) 349, 489
BsaJI CCNNGG 1 cut(s) 465
Bsc4I CCNNNNNNNGG 1 cut(s) 116
Bse1I ACTGG 2 cut(s) 259, 363
BseDI CCNNGG 1 cut(s) 465
BseGI GGATG 3 cut(s) 106, 417, 475
BseLI CCNNNNNNNGG 1 cut(s) 116
BseMII CTCAG 1 cut(s) 480
BseNI ACTGG 2 cut(s) 259, 363
BshFI GGCC 1 cut(s) 109
BslI CCNNNNNNNGG 1 cut(s) 116
BsnI GGCC 1 cut(s) 109
Bsp119I TTCGAA 1 cut(s) 201
Bsp143I GATC 2 cut(s) 370, 427
Bsp1720I GCTNAGC 1 cut(s) 489
Bsp19I CCATGG 1 cut(s) 465
BspACI CCGC 1 cut(s) 83
BspANI GGCC 1 cut(s) 109
BspCNI CTCAG 1 cut(s) 481
BspPI GGATC 1 cut(s) 422
BspT104I TTCGAA 1 cut(s) 201
BspTI CTTAAG 1 cut(s) 161
BsrI ACTGG 2 cut(s) 259, 363
BssECI CCNNGG 1 cut(s) 465
BssMI GATC 2 cut(s) 370, 427
BssT1I CCWWGG 1 cut(s) 465
Bst4CI ACNGT 2 cut(s) 23, 292
BstAFI CTTAAG 1 cut(s) 161
BstBI TTCGAA 1 cut(s) 201
BstDEI CTNAG 2 cut(s) 153, 489
BstDSI CCRYGG 1 cut(s) 465
BstEII GGTNACC 1 cut(s) 17
BstF5I GGATG 3 cut(s) 106, 417, 475
BstKTI GATC 2 cut(s) 373, 430
BstMBI GATC 2 cut(s) 370, 427
BstMWI GCNNNNNNNGC 1 cut(s) 485
BstPI GGTNACC 1 cut(s) 17
BstX2I RGATCY 2 cut(s) 370, 427
BstYI RGATCY 2 cut(s) 370, 427
BsuRI GGCC 1 cut(s) 109
BtgI CCRYGG 1 cut(s) 465
BtsCI GGATG 3 cut(s) 106, 417, 475
BtsIMutI CAGTG 2 cut(s) 288, 356
Cfr13I GGNCC 1 cut(s) 235
CviAII CATG 2 cut(s) 466, 510
CviJI RGCY 5 cut(s) 109, 127, 287, 488, 515
CviKI_1 RGCY 5 cut(s) 109, 127, 287, 488, 515
DdeI CTNAG 2 cut(s) 153, 489
DpnI GATC 2 cut(s) 372, 429
DpnII GATC 2 cut(s) 370, 427
EaeI YGGCCR 1 cut(s) 107
Eco130I CCWWGG 1 cut(s) 465
Eco47I GGWCC 1 cut(s) 235
Eco57I CTGAAG 2 cut(s) 87, 281
Eco91I GGTNACC 1 cut(s) 17
EcoO109I RGGNCCY 1 cut(s) 235
EcoO65I GGTNACC 1 cut(s) 17
EcoT14I CCWWGG 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 2 cut(s) 469, 513
FaiI YATR 9 cut(s) 59, 220, 222, 230, 377, 462, 467, 500, 511
FatI CATG 2 cut(s) 465, 509
FokI GGATG 3 cut(s) 113, 424, 482
FspBI CTAG 2 cut(s) 128, 368
GsuI CTGGAG 1 cut(s) 380
HaeIII GGCC 1 cut(s) 109
Hin1II CATG 2 cut(s) 469, 513
HinfI GANTC 5 cut(s) 26, 62, 157, 182, 303
Hpy166II GTNNAC 1 cut(s) 150
Hpy188I TCNGA 3 cut(s) 67, 100, 187
Hpy188III TCNNGA 1 cut(s) 328
Hpy8I GTNNAC 1 cut(s) 150
HpyAV CCTTC 5 cut(s) 62, 248, 305, 332, 554
HpyCH4III ACNGT 2 cut(s) 23, 292
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 6 cut(s) 122, 173, 232, 314, 479, 521
HpyF10VI GCNNNNNNNGC 1 cut(s) 485
HpyF3I CTNAG 2 cut(s) 153, 489
HpySE526I ACGT 1 cut(s) 210
Hsp92II CATG 2 cut(s) 469, 513
Kzo9I GATC 2 cut(s) 370, 427
LpnPI CCDG 6 cut(s) 218, 240, 284, 344, 429, 550
LweI GCATC 3 cut(s) 301, 460, 466
MaeI CTAG 2 cut(s) 128, 368
MaeII ACGT 1 cut(s) 210
MaeIII GTNAC 3 cut(s) 17, 250, 260
MalI GATC 2 cut(s) 372, 429
MboI GATC 2 cut(s) 370, 427
MboII GAAGA 3 cut(s) 4, 44, 55
MflI RGATCY 2 cut(s) 370, 427
MlsI TGGCCA 1 cut(s) 109
MluNI TGGCCA 1 cut(s) 109
MlyI GAGTC 2 cut(s) 56, 151
MmeI TCCRAC 1 cut(s) 455
MnlI CCTC 3 cut(s) 324, 346, 401
Mox20I TGGCCA 1 cut(s) 109
MscI TGGCCA 1 cut(s) 109
MseI TTAA 2 cut(s) 162, 533
Msp20I TGGCCA 1 cut(s) 109
MspCI CTTAAG 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 485
NcoI CCATGG 1 cut(s) 465
NdeII GATC 2 cut(s) 370, 427
NlaIII CATG 2 cut(s) 469, 513
NmuCI GTSAC 2 cut(s) 250, 260
NspV TTCGAA 1 cut(s) 201
PcsI WCGNNNNNNNCGW 2 cut(s) 207, 270
PfeI GAWTC 3 cut(s) 26, 182, 303
PflMI CCANNNNNTGG 1 cut(s) 116
PleI GAGTC 2 cut(s) 56, 151
PpsI GAGTC 2 cut(s) 56, 151
PpuMI RGGWCCY 1 cut(s) 235
Psp1406I AACGTT 1 cut(s) 210
Psp5II RGGWCCY 1 cut(s) 235
PspEI GGTNACC 1 cut(s) 17
PspPI GGNCC 1 cut(s) 235
PspPPI RGGWCCY 1 cut(s) 235
PsuI RGATCY 2 cut(s) 370, 427
SaqAI TTAA 2 cut(s) 162, 533
Sau3AI GATC 2 cut(s) 370, 427
Sau96I GGNCC 1 cut(s) 235
SchI GAGTC 2 cut(s) 56, 151
SetI ASST 6 cut(s) 129, 213, 227, 240, 369, 453
SfaNI GCATC 3 cut(s) 301, 460, 466
SfuI TTCGAA 1 cut(s) 201
SinI GGWCC 1 cut(s) 235
SmlI CTYRAG 3 cut(s) 161, 328, 504
SmoI CTYRAG 3 cut(s) 161, 328, 504
SsiI CCGC 1 cut(s) 83
SspMI CTAG 2 cut(s) 128, 368
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 2 cut(s) 23, 292
TaiI ACGT 1 cut(s) 213
TaqI TCGA 1 cut(s) 201
TfiI GAWTC 3 cut(s) 26, 182, 303
Tru1I TTAA 2 cut(s) 162, 533
Tru9I TTAA 2 cut(s) 162, 533
TscAI CASTG 2 cut(s) 295, 363
TseFI GTSAC 2 cut(s) 250, 260
Tsp45I GTSAC 2 cut(s) 250, 260
TspDTI ATGAA 1 cut(s) 282
TspRI CASTG 2 cut(s) 295, 363
Van91I CCANNNNNTGG 1 cut(s) 116
Vha464I CTTAAG 1 cut(s) 161
VpaK11BI GGWCC 1 cut(s) 235
XspI CTAG 2 cut(s) 128, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.