Rh2AG120100

Mitochondrial inner membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0002186
Physical Location & Seq
Reverse (-)
10775744 .. 10777882
2139 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG120100.1

Sequence Viewer

Length: 345 bp
ATGTCTTCTTCAGTTCCCCTAGACTCCGGATACGGAGTCACTCCATTTTCTCAATTGAAAGGATTATTCATTCAAGGTCCTATTTTCATCAGCTTCTTTCTTGCTATTAGAAACATGGCTGAGAAAGTTCCATCTTTTCAAAATGGTGGTGATCTCTGGTTTACTGATCTCACAACTCCAGAGAGCATGCTGATCCTTCCAATTTTGACAGCAATGACATTCTGGATCATAGTCGAGTTTGTGCAGGAATTTCACTTCTTTGTGACTAGAGGTGACAATGAAAATGAACTCATTTTAGCAACTCTACTTCAGGGATTCTTTGATTGGAGCTGCAACTGCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
ko02024 ko03060 ko03070 map02024 map03060 map03070
Pfam Domains
Protein Families
60KD_IMP

Protein Analysis

114

Amino Acids

12.9

Weight (kDa)

4.21

Isoelectric Point (pI)

45.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
60KD_IMP PF02096 11 - 81 2.9e-06 60Kd inner membrane protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 26
AclWI GGATC 2 cut(s) 187, 233
AcsI RAATTY 1 cut(s) 248
AcuI CTGAAG 1 cut(s) 293
AgsI TTSAA 3 cut(s) 58, 74, 140
AluBI AGCT 2 cut(s) 93, 330
AluI AGCT 2 cut(s) 93, 330
AlwI GGATC 2 cut(s) 187, 233
Aor13HI TCCGGA 1 cut(s) 26
ApeKI GCWGC 1 cut(s) 330
ApoI RAATTY 1 cut(s) 248
AspS9I GGNCC 1 cut(s) 77
AsuHPI GGTGA 2 cut(s) 161, 284
AvaII GGWCC 1 cut(s) 77
BbvI GCAGC 1 cut(s) 317
BccI CCATC 1 cut(s) 139
BciVI GTATCC 1 cut(s) 23
BfaI CTAG 2 cut(s) 20, 267
BfuI GTATCC 1 cut(s) 23
BisI GCNGC 1 cut(s) 331
BlsI GCNGC 1 cut(s) 332
Bme18I GGWCC 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 77
BpmI CTGGAG 1 cut(s) 162
BsaWI WCCGGW 1 cut(s) 26
Bse3DI GCAATG 1 cut(s) 219
BseAI TCCGGA 1 cut(s) 26
BseMI GCAATG 1 cut(s) 219
BseMII CTCAG 1 cut(s) 111
BseXI GCAGC 1 cut(s) 317
BsgI GTGCAG 2 cut(s) 263, 322
BsiSI CCGG 1 cut(s) 27
Bsp13I TCCGGA 1 cut(s) 26
Bsp143I GATC 4 cut(s) 151, 166, 192, 225
BspCNI CTCAG 1 cut(s) 112
BspEI TCCGGA 1 cut(s) 26
BspPI GGATC 2 cut(s) 187, 233
BsrDI GCAATG 1 cut(s) 219
BssMI GATC 4 cut(s) 151, 166, 192, 225
BstC8I GCNNGC 1 cut(s) 188
BstDEI CTNAG 1 cut(s) 120
BstKTI GATC 4 cut(s) 154, 169, 195, 228
BstMBI GATC 4 cut(s) 151, 166, 192, 225
BstMWI GCNNNNNNNGC 1 cut(s) 336
BstNSI RCATGY 1 cut(s) 190
BstV1I GCAGC 1 cut(s) 317
BsuI GTATCC 1 cut(s) 23
Cac8I GCNNGC 1 cut(s) 188
Cfr13I GGNCC 1 cut(s) 77
CviAII CATG 2 cut(s) 115, 187
CviJI RGCY 3 cut(s) 93, 119, 330
CviKI_1 RGCY 3 cut(s) 93, 119, 330
DdeI CTNAG 1 cut(s) 120
DpnI GATC 4 cut(s) 153, 168, 194, 227
DpnII GATC 4 cut(s) 151, 166, 192, 225
Eco47I GGWCC 1 cut(s) 77
Eco57I CTGAAG 1 cut(s) 293
EcoO109I RGGNCCY 1 cut(s) 77
FaeI CATG 2 cut(s) 118, 190
FaiI YATR 3 cut(s) 116, 188, 230
FatI CATG 2 cut(s) 114, 186
Fnu4HI GCNGC 1 cut(s) 331
Fsp4HI GCNGC 1 cut(s) 331
FspBI CTAG 2 cut(s) 20, 267
GluI GCNGC 1 cut(s) 331
GsuI CTGGAG 1 cut(s) 162
HapII CCGG 1 cut(s) 27
Hin1II CATG 2 cut(s) 118, 190
HinfI GANTC 3 cut(s) 23, 36, 315
HpaII CCGG 1 cut(s) 27
HphI GGTGA 2 cut(s) 161, 284
Hpy166II GTNNAC 1 cut(s) 162
Hpy188III TCNNGA 3 cut(s) 27, 179, 223
Hpy8I GTNNAC 1 cut(s) 162
HpyAV CCTTC 1 cut(s) 206
HpyCH4V TGCA 3 cut(s) 244, 333, 339
HpyF10VI GCNNNNNNNGC 1 cut(s) 336
HpyF3I CTNAG 1 cut(s) 120
Hsp92II CATG 2 cut(s) 118, 190
Kpn2I TCCGGA 1 cut(s) 26
Kzo9I GATC 4 cut(s) 151, 166, 192, 225
LmnI GCTCC 1 cut(s) 327
LpnPI CCDG 6 cut(s) 40, 142, 192, 208, 230, 296
Lsp1109I GCAGC 1 cut(s) 317
MaeI CTAG 2 cut(s) 20, 267
MaeIII GTNAC 3 cut(s) 37, 262, 272
MalI GATC 4 cut(s) 153, 168, 194, 227
MboI GATC 4 cut(s) 151, 166, 192, 225
MfeI CAATTG 1 cut(s) 53
MluCI AATT 3 cut(s) 53, 201, 248
MlyI GAGTC 2 cut(s) 17, 45
MnlI CCTC 1 cut(s) 263
MroI TCCGGA 1 cut(s) 26
MspI CCGG 1 cut(s) 27
MunI CAATTG 1 cut(s) 53
MwoI GCNNNNNNNGC 1 cut(s) 336
NdeII GATC 4 cut(s) 151, 166, 192, 225
NlaIII CATG 2 cut(s) 118, 190
NmuCI GTSAC 3 cut(s) 37, 262, 272
NspI RCATGY 1 cut(s) 190
PaeI GCATGC 1 cut(s) 190
PfeI GAWTC 1 cut(s) 315
PkrI GCNGC 1 cut(s) 332
PleI GAGTC 2 cut(s) 17, 44
PpsI GAGTC 2 cut(s) 17, 44
PpuMI RGGWCCY 1 cut(s) 77
Psp5II RGGWCCY 1 cut(s) 77
PspPI GGNCC 1 cut(s) 77
PspPPI RGGWCCY 1 cut(s) 77
SatI GCNGC 1 cut(s) 331
Sau3AI GATC 4 cut(s) 151, 166, 192, 225
Sau96I GGNCC 1 cut(s) 77
SchI GAGTC 2 cut(s) 17, 45
SetI ASST 4 cut(s) 79, 95, 274, 332
SinI GGWCC 1 cut(s) 77
SphI GCATGC 1 cut(s) 190
Sse9I AATT 3 cut(s) 53, 201, 248
SspMI CTAG 2 cut(s) 20, 267
TaqI TCGA 1 cut(s) 234
TasI AATT 3 cut(s) 53, 201, 248
TfiI GAWTC 1 cut(s) 315
TseFI GTSAC 3 cut(s) 37, 262, 272
TseI GCWGC 1 cut(s) 330
Tsp45I GTSAC 3 cut(s) 37, 262, 272
TspDTI ATGAA 4 cut(s) 58, 76, 294, 300
TspGWI ACGGA 1 cut(s) 48
VpaK11BI GGWCC 1 cut(s) 77
XapI RAATTY 1 cut(s) 248
XceI RCATGY 1 cut(s) 190
XspI CTAG 2 cut(s) 20, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.