Rorug02G0385300

Coatomer subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002186
Physical Location & Seq
Reverse (-)
49180522 .. 49181292
771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0385300.1

Sequence Viewer

Length: 360 bp
ATGGCGACTCCTCTCACGGCTTTCCGACTCGTTTCGATCCGGGCCGATTCCTCCGCCTCCCACAAACCCGACCCGAATCGCCGCAACAAGCCCGCTAACTCCAACTGGTGGGCCCCGCTCTTCGGCATGTCGTTCGACCCGGACTACATCACGGGCGCCCCTCCGCCGCAGAATCTGAGCACGGCTCCGGATTCCAGGCGCGACCCGAACCCGCCCGTTTCCAGATTCGCGCTGGGTTGCTTCACGGAAGAGAAGGCGAAGCAGCTCCGGAAGAAGACGCTGGAGACCTCCGCATTCCACGATATCATGTACCACTCCGCCATTGCGTCTCGGCTCGCCTCCGATTTGTCGGACCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Clat_adaptor_s

Protein Analysis

119

Amino Acids

13.2

Weight (kDa)

9.3

Isoelectric Point (pI)

57.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 155
AccB7I CCANNNNNTGG 1 cut(s) 108
AccBSI CCGCTC 1 cut(s) 118
AccII CGCG 2 cut(s) 201, 230
AccIII TCCGGA 2 cut(s) 187, 267
AciI CCGC 9 cut(s) 54, 82, 93, 116, 164, 167, 212, 291, 318
AclWI GGATC 1 cut(s) 31
AcyI GRCGYC 1 cut(s) 156
AfaI GTAC 1 cut(s) 311
AfiI CCNNNNNNNGG 2 cut(s) 108, 122
AjnI CCWGG 1 cut(s) 194
AluBI AGCT 1 cut(s) 265
AluI AGCT 1 cut(s) 265
Alw21I GWGCWC 1 cut(s) 182
Alw26I GTCTC 2 cut(s) 278, 333
AlwI GGATC 1 cut(s) 31
AlwNI CAGNNNCTG 1 cut(s) 175
Aor13HI TCCGGA 2 cut(s) 187, 267
AoxI GGCC 2 cut(s) 42, 111
ApaI GGGCCC 1 cut(s) 115
ApeKI GCWGC 1 cut(s) 262
AspLEI GCGC 3 cut(s) 158, 201, 232
AspS9I GGNCC 4 cut(s) 42, 111, 112, 352
AsuC2I CCSGG 2 cut(s) 41, 140
AvaII GGWCC 1 cut(s) 352
BaeGI GKGCMC 1 cut(s) 115
BanI GGYRCC 1 cut(s) 155
BanII GRGCYC 1 cut(s) 115
BbsI GAAGAC 1 cut(s) 281
Bbv12I GWGCWC 1 cut(s) 182
BbvI GCAGC 1 cut(s) 274
BceAI ACGGC 2 cut(s) 33, 198
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BciT130I CCWGG 1 cut(s) 196
BcnI CCSGG 2 cut(s) 41, 140
BcoDI GTCTC 2 cut(s) 278, 333
BfoI RGCGCY 1 cut(s) 159
BisI GCNGC 3 cut(s) 82, 167, 263
BlsI GCNGC 3 cut(s) 83, 168, 264
Bme1390I CCNGG 3 cut(s) 41, 140, 196
Bme18I GGWCC 1 cut(s) 352
BmgT120I GGNCC 4 cut(s) 42, 111, 112, 352
BmiI GGNNCC 4 cut(s) 113, 114, 157, 186
BmrFI CCNGG 3 cut(s) 41, 140, 196
BpiI GAAGAC 1 cut(s) 281
BplI GAGNNNNNCTC 2 cut(s) 169, 201
BpmI CTGGAG 1 cut(s) 302
BpuMI CCSGG 2 cut(s) 41, 140
BsaHI GRCGYC 1 cut(s) 156
BsaI GGTCTC 1 cut(s) 278
BsaWI WCCGGW 2 cut(s) 187, 267
Bsc4I CCNNNNNNNGG 2 cut(s) 108, 122
Bse1I ACTGG 2 cut(s) 110, 355
Bse3DI GCAATG 1 cut(s) 321
BseAI TCCGGA 2 cut(s) 187, 267
BseBI CCWGG 1 cut(s) 196
BseLI CCNNNNNNNGG 2 cut(s) 108, 122
BseMI GCAATG 1 cut(s) 321
BseMII CTCAG 1 cut(s) 167
BseNI ACTGG 2 cut(s) 110, 355
BseSI GKGCMC 1 cut(s) 115
BseXI GCAGC 1 cut(s) 274
BseYI CCCAGC 1 cut(s) 232
Bsh1236I CGCG 2 cut(s) 201, 230
BshFI GGCC 2 cut(s) 44, 113
BshNI GGYRCC 1 cut(s) 155
BsiHKAI GWGCWC 1 cut(s) 182
BsiSI CCGG 4 cut(s) 40, 140, 188, 268
BslI CCNNNNNNNGG 2 cut(s) 108, 122
BsmAI GTCTC 2 cut(s) 278, 333
BsmBI CGTCTC 1 cut(s) 333
BsmI GAATGC 1 cut(s) 293
BsnI GGCC 2 cut(s) 44, 113
Bso31I GGTCTC 1 cut(s) 278
Bsp120I GGGCCC 1 cut(s) 111
Bsp1286I GDGCHC 2 cut(s) 115, 182
Bsp13I TCCGGA 2 cut(s) 187, 267
Bsp143I GATC 1 cut(s) 36
BspACI CCGC 9 cut(s) 54, 82, 93, 116, 164, 167, 212, 291, 318
BspANI GGCC 2 cut(s) 44, 113
BspCNI CTCAG 1 cut(s) 168
BspEI TCCGGA 2 cut(s) 187, 267
BspFNI CGCG 2 cut(s) 201, 230
BspLI GGNNCC 4 cut(s) 113, 114, 157, 186
BspPI GGATC 1 cut(s) 31
BspQI GCTCTTC 1 cut(s) 125
BspT107I GGYRCC 1 cut(s) 155
BspTNI GGTCTC 1 cut(s) 278
BsrBI CCGCTC 1 cut(s) 118
BsrDI GCAATG 1 cut(s) 321
BsrI ACTGG 2 cut(s) 110, 355
BssMI GATC 1 cut(s) 36
BssNI GRCGYC 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 196
Bst6I CTCTTC 2 cut(s) 125, 243
BstACI GRCGYC 1 cut(s) 156
BstC8I GCNNGC 2 cut(s) 93, 336
BstDEI CTNAG 1 cut(s) 176
BstFNI CGCG 2 cut(s) 201, 230
BstH2I RGCGCY 1 cut(s) 159
BstHHI GCGC 3 cut(s) 158, 201, 232
BstKTI GATC 1 cut(s) 39
BstMAI GTCTC 2 cut(s) 278, 333
BstMBI GATC 1 cut(s) 36
BstNI CCWGG 1 cut(s) 196
BstNSI RCATGY 1 cut(s) 130
BstSCI CCNGG 3 cut(s) 39, 138, 194
BstSLI GKGCMC 1 cut(s) 115
BstUI CGCG 2 cut(s) 201, 230
BstV1I GCAGC 1 cut(s) 274
BstV2I GAAGAC 1 cut(s) 281
BsuRI GGCC 2 cut(s) 44, 113
Cac8I GCNNGC 2 cut(s) 93, 336
CaiI CAGNNNCTG 1 cut(s) 175
CfoI GCGC 3 cut(s) 158, 201, 232
Cfr13I GGNCC 4 cut(s) 42, 111, 112, 352
CseI GACGC 2 cut(s) 286, 315
Csp6I GTAC 1 cut(s) 310
CviAII CATG 2 cut(s) 127, 307
CviJI RGCY 7 cut(s) 20, 44, 91, 113, 185, 265, 334
CviKI_1 RGCY 7 cut(s) 20, 44, 91, 113, 185, 265, 334
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 1 cut(s) 176
DinI GGCGCC 1 cut(s) 157
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
Eam1104I CTCTTC 2 cut(s) 125, 243
EarI CTCTTC 2 cut(s) 125, 243
EciI GGCGGA 3 cut(s) 43, 153, 307
Eco24I GRGCYC 1 cut(s) 115
Eco31I GGTCTC 1 cut(s) 278
Eco32I GATATC 1 cut(s) 304
Eco47I GGWCC 1 cut(s) 352
EcoO109I RGGNCCY 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 194
EcoRV GATATC 1 cut(s) 304
EcoT38I GRGCYC 1 cut(s) 115
EgeI GGCGCC 1 cut(s) 157
EheI GGCGCC 1 cut(s) 157
Esp3I CGTCTC 1 cut(s) 333
FaeI CATG 2 cut(s) 130, 310
FaiI YATR 2 cut(s) 128, 308
FatI CATG 2 cut(s) 126, 306
FauI CCCGC 3 cut(s) 100, 123, 219
Fnu4HI GCNGC 3 cut(s) 82, 167, 263
FriOI GRGCYC 1 cut(s) 115
Fsp4HI GCNGC 3 cut(s) 82, 167, 263
GlaI GCGC 3 cut(s) 157, 200, 231
GluI GCNGC 3 cut(s) 82, 167, 263
GsaI CCCAGC 1 cut(s) 236
GsuI CTGGAG 1 cut(s) 302
HaeII RGCGCY 1 cut(s) 159
HaeIII GGCC 2 cut(s) 44, 113
HapII CCGG 4 cut(s) 40, 140, 188, 268
HgaI GACGC 2 cut(s) 286, 315
HhaI GCGC 3 cut(s) 158, 201, 232
Hin1I GRCGYC 1 cut(s) 156
Hin1II CATG 2 cut(s) 130, 310
Hin6I GCGC 3 cut(s) 156, 199, 230
HinP1I GCGC 3 cut(s) 156, 199, 230
HinfI GANTC 7 cut(s) 7, 27, 47, 76, 172, 191, 225
HpaII CCGG 4 cut(s) 40, 140, 188, 268
Hpy188I TCNGA 4 cut(s) 26, 177, 343, 352
Hpy188III TCNNGA 3 cut(s) 188, 222, 268
HpyAV CCTTC 1 cut(s) 247
HpyF3I CTNAG 1 cut(s) 176
Hsp92I GRCGYC 1 cut(s) 156
Hsp92II CATG 2 cut(s) 130, 310
HspAI GCGC 3 cut(s) 156, 199, 230
KasI GGCGCC 1 cut(s) 155
Kpn2I TCCGGA 2 cut(s) 187, 267
Kzo9I GATC 1 cut(s) 36
LguI GCTCTTC 1 cut(s) 125
LmnI GCTCC 2 cut(s) 190, 270
Lsp1109I GCAGC 1 cut(s) 274
MalI GATC 1 cut(s) 38
MbiI CCGCTC 1 cut(s) 118
MboI GATC 1 cut(s) 36
MboII GAAGA 4 cut(s) 112, 260, 283, 286
MhlI GDGCHC 2 cut(s) 115, 182
Mly113I GGCGCC 1 cut(s) 156
MlyI GAGTC 1 cut(s) 21
MmeI TCCRAC 3 cut(s) 49, 126, 330
MnlI CCTC 6 cut(s) 21, 61, 67, 171, 298, 349
MroI TCCGGA 2 cut(s) 187, 267
MspI CCGG 4 cut(s) 40, 140, 188, 268
MspR9I CCNGG 3 cut(s) 41, 140, 196
Mva1269I GAATGC 1 cut(s) 293
MvaI CCWGG 1 cut(s) 196
MvnI CGCG 2 cut(s) 201, 230
NarI GGCGCC 1 cut(s) 156
NciI CCSGG 2 cut(s) 41, 140
NdeII GATC 1 cut(s) 36
NlaIII CATG 2 cut(s) 130, 310
NlaIV GGNNCC 4 cut(s) 113, 114, 157, 186
NmeAIII GCCGAG 1 cut(s) 310
NspI RCATGY 1 cut(s) 130
PciSI GCTCTTC 1 cut(s) 125
PctI GAATGC 1 cut(s) 293
PfeI GAWTC 5 cut(s) 47, 76, 172, 191, 225
PflMI CCANNNNNTGG 1 cut(s) 108
PkrI GCNGC 3 cut(s) 83, 168, 264
PleI GAGTC 1 cut(s) 21
PluTI GGCGCC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 21
Psp6I CCWGG 1 cut(s) 194
PspFI CCCAGC 1 cut(s) 232
PspGI CCWGG 1 cut(s) 194
PspN4I GGNNCC 4 cut(s) 113, 114, 157, 186
PspOMI GGGCCC 1 cut(s) 111
PspPI GGNCC 4 cut(s) 42, 111, 112, 352
PstNI CAGNNNCTG 1 cut(s) 175
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
SapI GCTCTTC 1 cut(s) 125
SatI GCNGC 3 cut(s) 82, 167, 263
Sau3AI GATC 1 cut(s) 36
Sau96I GGNCC 4 cut(s) 42, 111, 112, 352
SchI GAGTC 1 cut(s) 21
ScrFI CCNGG 3 cut(s) 41, 140, 196
SduI GDGCHC 2 cut(s) 115, 182
SetI ASST 2 cut(s) 267, 290
SfoI GGCGCC 1 cut(s) 157
SinI GGWCC 1 cut(s) 352
SsiI CCGC 9 cut(s) 54, 82, 93, 116, 164, 167, 212, 291, 318
SspDI GGCGCC 1 cut(s) 155
StyD4I CCNGG 3 cut(s) 39, 138, 194
TaqI TCGA 2 cut(s) 35, 135
TauI GCSGC 2 cut(s) 84, 169
TfiI GAWTC 5 cut(s) 47, 76, 172, 191, 225
TseI GCWGC 1 cut(s) 262
TspGWI ACGGA 1 cut(s) 260
Van91I CCANNNNNTGG 1 cut(s) 108
VpaK11BI GGWCC 1 cut(s) 352
XceI RCATGY 1 cut(s) 130
XcmI CCANNNNNNNNNTGG 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.