Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002186

Physical Location & Seq

Genomic Coordinates Forward (+)

82998532 .. 83001412

Gene Structure 2881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G047910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGAGTTCGCTTGATTTTTATTTCATTTTGGATTCAAGCCCATTTGTGAAGAACATTTTTCTTCAAGACTCTGAAAGGATGTGTGTGGTCATCCACTATTACTCTGATGACTGGCCAACAAATGTTGCAAAGCTAGCATTTGAAAATCTATTGGAGGTAATCATGTTCGAGTGCAACATTATATATAAGTTTGTGCAGGAACTTCACTTCTTTGTGACTGGAGGTGACGATGAAAATGAACTCATTTTAGCAACTCTACTTCAGGGATTCTTTGATGTAGCTGCCCTTCTCTTGAGAAAAAATGTTGACAAAAGGGAGGAATTAGAGCACCTGGATCTCATACTTCTATATACAGAACATCAATATATGGCAGGAAGCAAAGTGAGTGGGACCAAATGGCTAGTGAACCTATTCCTTCTTGTAACACTCATCATTCAATGTAAACCCATTCCTCACAATCTACACTTGACTAGAAATTTAACATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clat_adaptor_s

Protein Analysis

162

Amino Acids

18.89

Weight (kDa)

4.98

Isoelectric Point (pI)

50.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09800 AT3G09800 AT3G09800 AT3G09800 AT3G09800 AT4G08520
fragaria_vesca	FvH4_3g06220 FvH4_6g33990 FvH4_6g33990 FvH4_6g33990 FvH4_6g33990
malus_domestica	MD09G1190300.v1.1 MD17G1173400.v1.1
prunus_persica	Prupe.3G046200_v2.0.a1 Prupe.3G046200_v2.0.a1
pyrus_communis	pycom09g10680
rosa_chinensis	RchiOBHm_Chr2g0124081 RchiOBHm_Chr2g0143981 RchiOBHm_Chr5g0013101 RchiOBHm_Chr5g0031791 RchiOBHm_Chr5g0057151 RchiOBHm_Chr5g0057191 RchiOBHm_Chr5g0078651 RchiOBHm_Chr6g0257861 RchiOBHm_Chr7g0236651
rosa_laevigata	RLG00000020067 RLG00000031987
rosa_roxburghii	Rroxscaffold_1G00063480 Rroxscaffold_2G00097030 Rroxscaffold_2G00101440
rosa_rugosa	Rorug02G0207000 Rorug02G0385100 Rorug02G0385200 Rorug02G0385300 Rorug05G0007200
rosa_samantha	Rh2AG120100 Rh2AG437900 Rh5DG097000
rosa_wichuraiana	Rw2G035760 Rw5G008860 Rw5G047790 Rw5G047910 Rw7G026480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	487
AclWI	GGATC	1 cut(s)	342
AcoI	YGGCCR	1 cut(s)	113
AcsI	RAATTY	1 cut(s)	475
AcuI	CTGAAG	1 cut(s)	245
AgsI	TTSAA	4 cut(s)	36, 65, 143, 437
AjnI	CCWGG	1 cut(s)	330
AluBI	AGCT	2 cut(s)	133, 281
AluI	AGCT	2 cut(s)	133, 281
Alw21I	GWGCWC	1 cut(s)	330
AlwI	GGATC	1 cut(s)	342
AoxI	GGCC	1 cut(s)	113
ApeKI	GCWGC	1 cut(s)	281
ApoI	RAATTY	1 cut(s)	475
Asp700I	GAANNNNTTC	1 cut(s)	410
AspS9I	GGNCC	1 cut(s)	390
AsuHPI	GGTGA	1 cut(s)	236
AsuNHI	GCTAGC	1 cut(s)	133
AvaII	GGWCC	1 cut(s)	390
BalI	TGGCCA	1 cut(s)	115
BarI	GAAGNNNNNNTAC	2 cut(s)	270, 302
Bbv12I	GWGCWC	1 cut(s)	330
BbvI	GCAGC	1 cut(s)	268
BciT130I	CCWGG	1 cut(s)	332
BfaI	CTAG	3 cut(s)	134, 401, 471
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
Bme1390I	CCNGG	1 cut(s)	332
Bme18I	GGWCC	1 cut(s)	390
BmgT120I	GGNCC	1 cut(s)	390
BmiI	GGNNCC	1 cut(s)	391
BmrFI	CCNGG	1 cut(s)	332
BmtI	GCTAGC	1 cut(s)	137
BpmI	CTGGAG	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	313
Bse1I	ACTGG	2 cut(s)	116, 223
BseBI	CCWGG	1 cut(s)	332
BseGI	GGATG	2 cut(s)	84, 90
BseNI	ACTGG	2 cut(s)	116, 223
BseXI	GCAGC	1 cut(s)	268
BsgI	GTGCAG	1 cut(s)	215
BshFI	GGCC	1 cut(s)	115
BsiHKAI	GWGCWC	1 cut(s)	330
BslFI	GGGAC	1 cut(s)	403
BsmFI	GGGAC	1 cut(s)	403
BsnI	GGCC	1 cut(s)	115
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	1 cut(s)	334
BspANI	GGCC	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	391
BspOI	GCTAGC	1 cut(s)	137
BspPI	GGATC	1 cut(s)	342
BsrI	ACTGG	2 cut(s)	116, 223
BssMI	GATC	1 cut(s)	334
Bst2UI	CCWGG	1 cut(s)	332
BstC8I	GCNNGC	1 cut(s)	135
BstF5I	GGATG	2 cut(s)	84, 90
BstKTI	GATC	1 cut(s)	337
BstMBI	GATC	1 cut(s)	334
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNI	CCWGG	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	330
BstV1I	GCAGC	1 cut(s)	268
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BsuRI	GGCC	1 cut(s)	115
BtsCI	GGATG	2 cut(s)	84, 90
Cac8I	GCNNGC	1 cut(s)	135
Cfr13I	GGNCC	1 cut(s)	390
CspCI	CAANNNNNGTGG	2 cut(s)	367, 402
CviAII	CATG	1 cut(s)	163
CviJI	RGCY	5 cut(s)	39, 115, 133, 281, 400
CviKI_1	RGCY	5 cut(s)	39, 115, 133, 281, 400
DpnI	GATC	1 cut(s)	336
DpnII	GATC	1 cut(s)	334
EaeI	YGGCCR	1 cut(s)	113
Eco47I	GGWCC	1 cut(s)	390
Eco57I	CTGAAG	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	330
FaeI	CATG	1 cut(s)	166
FaqI	GGGAC	1 cut(s)	403
FatI	CATG	1 cut(s)	162
Fnu4HI	GCNGC	1 cut(s)	282
FokI	GGATG	2 cut(s)	77, 91
Fsp4HI	GCNGC	1 cut(s)	282
FspBI	CTAG	3 cut(s)	134, 401, 471
GluI	GCNGC	1 cut(s)	282
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	115
Hin1II	CATG	1 cut(s)	166
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	3 cut(s)	32, 68, 267
HphI	GGTGA	1 cut(s)	236
Hpy166II	GTNNAC	3 cut(s)	307, 406, 443
Hpy188I	TCNGA	2 cut(s)	73, 106
Hpy188III	TCNNGA	2 cut(s)	65, 292
Hpy8I	GTNNAC	3 cut(s)	307, 406, 443
HpyAV	CCTTC	2 cut(s)	296, 425
HpyCH4V	TGCA	3 cut(s)	128, 174, 196
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
Hsp92II	CATG	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	334
LpnPI	CCDG	7 cut(s)	97, 182, 204, 248, 317, 344, 357
Lsp1109I	GCAGC	1 cut(s)	268
MaeI	CTAG	3 cut(s)	134, 401, 471
MaeIII	GTNAC	3 cut(s)	214, 224, 421
MalI	GATC	1 cut(s)	336
MboI	GATC	1 cut(s)	334
MboII	GAAGA	2 cut(s)	53, 61
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	1 cut(s)	330
MlsI	TGGCCA	1 cut(s)	115
MluCI	AATT	2 cut(s)	320, 475
MluNI	TGGCCA	1 cut(s)	115
MlyI	GAGTC	1 cut(s)	62
MnlI	CCTC	4 cut(s)	148, 215, 310, 462
Mox20I	TGGCCA	1 cut(s)	115
MroXI	GAANNNNTTC	1 cut(s)	410
MscI	TGGCCA	1 cut(s)	115
MseI	TTAA	1 cut(s)	479
Msp20I	TGGCCA	1 cut(s)	115
MspR9I	CCNGG	1 cut(s)	332
MvaI	CCWGG	1 cut(s)	332
MwoI	GCNNNNNNNGC	1 cut(s)	134
NdeII	GATC	1 cut(s)	334
NheI	GCTAGC	1 cut(s)	133
NlaIII	CATG	1 cut(s)	166
NlaIV	GGNNCC	1 cut(s)	391
NmuCI	GTSAC	2 cut(s)	214, 224
PdmI	GAANNNNTTC	1 cut(s)	410
PfeI	GAWTC	2 cut(s)	32, 267
PkrI	GCNGC	1 cut(s)	283
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
PsiI	TTATAA	1 cut(s)	487
Psp6I	CCWGG	1 cut(s)	330
PspGI	CCWGG	1 cut(s)	330
PspN4I	GGNNCC	1 cut(s)	391
PspPI	GGNCC	1 cut(s)	390
PsuI	RGATCY	1 cut(s)	334
SaqAI	TTAA	1 cut(s)	479
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	1 cut(s)	334
Sau96I	GGNCC	1 cut(s)	390
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	332
SduI	GDGCHC	1 cut(s)	330
SetI	ASST	6 cut(s)	135, 159, 226, 283, 333, 411
SinI	GGWCC	1 cut(s)	390
SmlI	CTYRAG	1 cut(s)	292
SmoI	CTYRAG	1 cut(s)	292
Sse9I	AATT	2 cut(s)	320, 475
SspMI	CTAG	3 cut(s)	134, 401, 471
StyD4I	CCNGG	1 cut(s)	330
TaqI	TCGA	1 cut(s)	168
TasI	AATT	2 cut(s)	320, 475
TfiI	GAWTC	2 cut(s)	32, 267
Tru1I	TTAA	1 cut(s)	479
Tru9I	TTAA	1 cut(s)	479
TseFI	GTSAC	2 cut(s)	214, 224
TseI	GCWGC	1 cut(s)	281
Tsp45I	GTSAC	2 cut(s)	214, 224
TspDTI	ATGAA	3 cut(s)	13, 246, 252
VpaK11BI	GGWCC	1 cut(s)	390
XapI	RAATTY	1 cut(s)	475
XmnI	GAANNNNTTC	1 cut(s)	410
XspI	CTAG	3 cut(s)	134, 401, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.