Rw7G026480

Coatomer subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0002186
Physical Location & Seq
Forward (+)
33683355 .. 33684879
1525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G026480.1

Sequence Viewer

Length: 543 bp
ATGAAATTATTAGGCTACCTGCGTATAGGATTTGGAGATTCATCCCCATCTGTGAAGAACATTCTTCTTCTAGACTCTGAAGGGAAGCGTGTGGCTGTCAAGTATTACTCAGATGATTGGCCAACAAATGGTGCAAAGCTAGCTTTTGAAAAATCTGTATTCGCTAAGACTCTAAAGACCAATGCAAGGCTAGAAGCGGAGATAATGATGTTTGACAGCAACATTGTTATATACAAGTTTATGCAGGACCTTCACTTCTTTGTGACTGGAGGCGACGATGAAAACGAACTCATTTTAGCCACTGTACTTCAGGGATTCTTTGATGCAGTTGCCCTTCTCTTGAGGGAGGCGCTAGAGAACCTGGATCTCATACTTCTATGCTTTGATGAGATCGTAGATGGAGGGATGATACTTGAAACAGATCCAACTGTTATCGCAGGAAAGGTAGCAACTCATACCATTTACAACAGATGCTTCCGGCACATTGTTATCTCATACGCATTCAGACAACACATGCATCTCGCAAACTGTTATCTTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Clat_adaptor_s

Protein Analysis

180

Amino Acids

20.38

Weight (kDa)

5.5

Isoelectric Point (pI)

38.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clat_adaptor_s PF01217 18 - 150 4.7e-17 Clathrin adaptor complex small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 27
AccB7I CCANNNNNTGG 1 cut(s) 128
AciI CCGC 1 cut(s) 197
AclWI GGATC 2 cut(s) 372, 416
AcoI YGGCCR 1 cut(s) 119
AcuI CTGAAG 2 cut(s) 99, 293
AfaI GTAC 1 cut(s) 306
AfiI CCNNNNNNNGG 2 cut(s) 128, 186
AgsI TTSAA 2 cut(s) 149, 416
AjnI CCWGG 1 cut(s) 360
AluBI AGCT 2 cut(s) 139, 143
AluI AGCT 2 cut(s) 139, 143
AlwI GGATC 2 cut(s) 372, 416
AoxI GGCC 1 cut(s) 119
AspLEI GCGC 1 cut(s) 352
AspS9I GGNCC 1 cut(s) 247
AsuNHI GCTAGC 1 cut(s) 139
AvaII GGWCC 1 cut(s) 247
BalI TGGCCA 1 cut(s) 121
BccI CCATC 2 cut(s) 55, 392
BciT130I CCWGG 1 cut(s) 362
BfaI CTAG 4 cut(s) 71, 140, 191, 353
BfoI RGCGCY 1 cut(s) 353
BfuAI ACCTGC 1 cut(s) 27
Bme1390I CCNGG 1 cut(s) 362
Bme18I GGWCC 1 cut(s) 247
BmgT120I GGNCC 1 cut(s) 247
BmrFI CCNGG 1 cut(s) 362
BmsI GCATC 3 cut(s) 313, 461, 526
BmtI GCTAGC 1 cut(s) 143
BpmI CTGGAG 1 cut(s) 288
BpuEI CTTGAG 1 cut(s) 361
Bsc4I CCNNNNNNNGG 2 cut(s) 128, 186
Bse1I ACTGG 1 cut(s) 271
BseBI CCWGG 1 cut(s) 362
BseGI GGATG 2 cut(s) 41, 411
BseLI CCNNNNNNNGG 2 cut(s) 128, 186
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 271
BshFI GGCC 1 cut(s) 121
BsiSI CCGG 1 cut(s) 478
BslI CCNNNNNNNGG 2 cut(s) 128, 186
BsmI GAATGC 1 cut(s) 500
BsnI GGCC 1 cut(s) 121
Bsp143I GATC 3 cut(s) 364, 390, 421
BspACI CCGC 1 cut(s) 197
BspANI GGCC 1 cut(s) 121
BspCNI CTCAG 1 cut(s) 122
BspMI ACCTGC 1 cut(s) 27
BspOI GCTAGC 1 cut(s) 143
BspPI GGATC 2 cut(s) 372, 416
BsrI ACTGG 1 cut(s) 271
BssMI GATC 3 cut(s) 364, 390, 421
Bst2UI CCWGG 1 cut(s) 362
Bst4CI ACNGT 3 cut(s) 304, 430, 530
BstC8I GCNNGC 1 cut(s) 141
BstDEI CTNAG 2 cut(s) 109, 165
BstF5I GGATG 2 cut(s) 41, 411
BstH2I RGCGCY 1 cut(s) 353
BstHHI GCGC 1 cut(s) 352
BstKTI GATC 3 cut(s) 367, 393, 424
BstMBI GATC 3 cut(s) 364, 390, 421
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstNI CCWGG 1 cut(s) 362
BstNSI RCATGY 1 cut(s) 517
BstSCI CCNGG 1 cut(s) 360
BstX2I RGATCY 2 cut(s) 364, 421
BstYI RGATCY 2 cut(s) 364, 421
BsuRI GGCC 1 cut(s) 121
BtsCI GGATG 2 cut(s) 41, 411
BtsIMutI CAGTG 1 cut(s) 300
BveI ACCTGC 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 141
CfoI GCGC 1 cut(s) 352
Cfr13I GGNCC 1 cut(s) 247
Csp6I GTAC 1 cut(s) 305
CviAII CATG 1 cut(s) 514
CviJI RGCY 7 cut(s) 15, 95, 121, 139, 143, 190, 299
CviKI_1 RGCY 7 cut(s) 15, 95, 121, 139, 143, 190, 299
CviQI GTAC 1 cut(s) 305
DdeI CTNAG 2 cut(s) 109, 165
DpnI GATC 3 cut(s) 366, 392, 423
DpnII GATC 3 cut(s) 364, 390, 421
EaeI YGGCCR 1 cut(s) 119
Eco47I GGWCC 1 cut(s) 247
Eco57I CTGAAG 2 cut(s) 99, 293
EcoO109I RGGNCCY 1 cut(s) 247
EcoRII CCWGG 1 cut(s) 360
EcoT22I ATGCAT 1 cut(s) 519
FaeI CATG 1 cut(s) 517
FaiI YATR 9 cut(s) 26, 230, 232, 242, 371, 379, 456, 496, 515
FatI CATG 1 cut(s) 513
FokI GGATG 2 cut(s) 28, 418
FspBI CTAG 4 cut(s) 71, 140, 191, 353
GlaI GCGC 1 cut(s) 351
GsuI CTGGAG 1 cut(s) 288
HaeII RGCGCY 1 cut(s) 353
HaeIII GGCC 1 cut(s) 121
HapII CCGG 1 cut(s) 478
HhaI GCGC 1 cut(s) 352
Hin1II CATG 1 cut(s) 517
Hin6I GCGC 1 cut(s) 350
HinP1I GCGC 1 cut(s) 350
HinfI GANTC 4 cut(s) 38, 74, 169, 315
HpaII CCGG 1 cut(s) 478
Hpy188I TCNGA 3 cut(s) 79, 112, 506
Hpy188III TCNNGA 2 cut(s) 71, 340
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 3 cut(s) 74, 260, 344
HpyCH4III ACNGT 3 cut(s) 304, 430, 530
HpyCH4V TGCA 5 cut(s) 134, 185, 244, 326, 517
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 2 cut(s) 109, 165
Hsp92II CATG 1 cut(s) 517
HspAI GCGC 1 cut(s) 350
Kzo9I GATC 3 cut(s) 364, 390, 421
LpnPI CCDG 8 cut(s) 32, 230, 252, 296, 347, 374, 423, 491
LweI GCATC 3 cut(s) 313, 461, 526
MaeI CTAG 4 cut(s) 71, 140, 191, 353
MaeIII GTNAC 1 cut(s) 262
MalI GATC 3 cut(s) 366, 392, 423
MboI GATC 3 cut(s) 364, 390, 421
MboII GAAGA 3 cut(s) 56, 59, 67
MflI RGATCY 2 cut(s) 364, 421
MlsI TGGCCA 1 cut(s) 121
MluCI AATT 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 121
MlyI GAGTC 2 cut(s) 68, 163
MmeI TCCRAC 1 cut(s) 449
MnlI CCTC 4 cut(s) 263, 336, 340, 395
Mox20I TGGCCA 1 cut(s) 121
Mph1103I ATGCAT 1 cut(s) 519
MscI TGGCCA 1 cut(s) 121
MseI TTAA 1 cut(s) 537
Msp20I TGGCCA 1 cut(s) 121
MspI CCGG 1 cut(s) 478
MspR9I CCNGG 1 cut(s) 362
Mva1269I GAATGC 1 cut(s) 500
MvaI CCWGG 1 cut(s) 362
MwoI GCNNNNNNNGC 1 cut(s) 140
NdeII GATC 3 cut(s) 364, 390, 421
NheI GCTAGC 1 cut(s) 139
NlaIII CATG 1 cut(s) 517
NmuCI GTSAC 1 cut(s) 262
NsiI ATGCAT 1 cut(s) 519
NspI RCATGY 1 cut(s) 517
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PctI GAATGC 1 cut(s) 500
PfeI GAWTC 2 cut(s) 38, 315
PflMI CCANNNNNTGG 1 cut(s) 128
PleI GAGTC 2 cut(s) 68, 163
PpsI GAGTC 2 cut(s) 68, 163
PpuMI RGGWCCY 1 cut(s) 247
Psp5II RGGWCCY 1 cut(s) 247
Psp6I CCWGG 1 cut(s) 360
PspGI CCWGG 1 cut(s) 360
PspPI GGNCC 1 cut(s) 247
PspPPI RGGWCCY 1 cut(s) 247
PsuI RGATCY 2 cut(s) 364, 421
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
SaqAI TTAA 1 cut(s) 537
Sau3AI GATC 3 cut(s) 364, 390, 421
Sau96I GGNCC 1 cut(s) 247
SchI GAGTC 2 cut(s) 68, 163
ScrFI CCNGG 1 cut(s) 362
SetI ASST 6 cut(s) 21, 141, 145, 252, 363, 447
SfaNI GCATC 3 cut(s) 313, 461, 526
SinI GGWCC 1 cut(s) 247
SmlI CTYRAG 1 cut(s) 340
SmoI CTYRAG 1 cut(s) 340
Sse9I AATT 1 cut(s) 5
SsiI CCGC 1 cut(s) 197
SspMI CTAG 4 cut(s) 71, 140, 191, 353
StyD4I CCNGG 1 cut(s) 360
TaaI ACNGT 3 cut(s) 304, 430, 530
TasI AATT 1 cut(s) 5
TatI WGTACW 1 cut(s) 304
TfiI GAWTC 2 cut(s) 38, 315
Tru1I TTAA 1 cut(s) 537
Tru9I TTAA 1 cut(s) 537
TscAI CASTG 1 cut(s) 307
TseFI GTSAC 1 cut(s) 262
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 3 cut(s) 17, 30, 294
TspRI CASTG 1 cut(s) 307
Van91I CCANNNNNTGG 1 cut(s) 128
VpaK11BI GGWCC 1 cut(s) 247
XbaI TCTAGA 1 cut(s) 70
XceI RCATGY 1 cut(s) 517
XspI CTAG 4 cut(s) 71, 140, 191, 353
Zsp2I ATGCAT 1 cut(s) 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.