Rorug02G0385200

Coatomer subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002186
Physical Location & Seq
Reverse (-)
49169485 .. 49170400
916 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0385200.1

Sequence Viewer

Length: 375 bp
ATGAACATGACTGTCTTTCACGGCAGTAGTTCTGGTGGCCAAGTGGTGGCCCTATGCGATGTGGCTGCTTGCGGTGAGGATGGATACTCCCTGCATGTAAAGATAATAGTTGATGGCATTAGTCAATGGCATGCTTCACATATCAATAAAGTTCATAATCATGAGTATATGGACGACGACCAAGAGTGCTTACCTCCTTCATATTGCGAAATACAAGAGGTAGATCAAGAACGGATTGTCTTACTGTCCAAAGTTCGCAGTTTCTGGACCTCCCATTCCGTGTCAGAGATGGAGGTGTTGATTGGGCAATCTATGTGGATTGGGCGGCGGCTATTAGGCCGGCCGGAGTTTCATATGGCGGCGGGTACATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Clat_adaptor_s

Protein Analysis

124

Amino Acids

13.86

Weight (kDa)

5.32

Isoelectric Point (pI)

56.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 46
AciI CCGC 5 cut(s) 72, 325, 328, 359, 362
AcoI YGGCCR 2 cut(s) 37, 341
AfaI GTAC 1 cut(s) 367
AfiI CCNNNNNNNGG 1 cut(s) 46
AlwNI CAGNNNCTG 1 cut(s) 264
AoxI GGCC 4 cut(s) 37, 48, 337, 341
ApeKI GCWGC 1 cut(s) 65
AspS9I GGNCC 2 cut(s) 49, 267
AsuHPI GGTGA 1 cut(s) 86
AvaII GGWCC 1 cut(s) 267
BalI TGGCCA 1 cut(s) 39
BbvI GCAGC 1 cut(s) 52
BccI CCATC 3 cut(s) 74, 107, 283
BceAI ACGGC 1 cut(s) 37
BcgI CGANNNNNNTGC 2 cut(s) 47, 81
BciVI GTATCC 1 cut(s) 77
BfuI GTATCC 1 cut(s) 77
BisI GCNGC 4 cut(s) 66, 326, 329, 360
BlsI GCNGC 4 cut(s) 67, 327, 330, 361
Bme18I GGWCC 1 cut(s) 267
BmgT120I GGNCC 2 cut(s) 49, 267
Bsc4I CCNNNNNNNGG 1 cut(s) 46
Bse118I RCCGGY 1 cut(s) 339
BseGI GGATG 1 cut(s) 85
BseLI CCNNNNNNNGG 1 cut(s) 46
BseX3I CGGCCG 1 cut(s) 341
BseXI GCAGC 1 cut(s) 52
Bsh1285I CGRYCG 1 cut(s) 344
BshFI GGCC 4 cut(s) 39, 50, 339, 343
BsiEI CGRYCG 1 cut(s) 344
BsiSI CCGG 2 cut(s) 340, 344
BslI CCNNNNNNNGG 1 cut(s) 46
BsnI GGCC 4 cut(s) 39, 50, 339, 343
Bsp143I GATC 1 cut(s) 223
BspACI CCGC 5 cut(s) 72, 325, 328, 359, 362
BspANI GGCC 4 cut(s) 39, 50, 339, 343
BspHI TCATGA 1 cut(s) 160
BsrFI RCCGGY 1 cut(s) 339
BssAI RCCGGY 1 cut(s) 339
BssMI GATC 1 cut(s) 223
Bst4CI ACNGT 2 cut(s) 13, 246
BstC8I GCNNGC 3 cut(s) 70, 132, 341
BstDEI CTNAG 1 cut(s) 372
BstF5I GGATG 1 cut(s) 85
BstKTI GATC 1 cut(s) 226
BstMBI GATC 1 cut(s) 223
BstMCI CGRYCG 1 cut(s) 344
BstNSI RCATGY 2 cut(s) 98, 134
BstV1I GCAGC 1 cut(s) 52
BstZI CGGCCG 1 cut(s) 341
BsuI GTATCC 1 cut(s) 77
BsuRI GGCC 4 cut(s) 39, 50, 339, 343
BtgZI GCGATG 1 cut(s) 72
BtsCI GGATG 1 cut(s) 85
Cac8I GCNNGC 3 cut(s) 70, 132, 341
CaiI CAGNNNCTG 1 cut(s) 264
CciI TCATGA 1 cut(s) 160
Cfr10I RCCGGY 1 cut(s) 339
Cfr13I GGNCC 2 cut(s) 49, 267
Csp6I GTAC 1 cut(s) 366
CspCI CAANNNNNGTGG 2 cut(s) 296, 331
CviAII CATG 4 cut(s) 7, 95, 131, 161
CviJI RGCY 6 cut(s) 39, 50, 65, 331, 339, 343
CviKI_1 RGCY 6 cut(s) 39, 50, 65, 331, 339, 343
CviQI GTAC 1 cut(s) 366
DdeI CTNAG 1 cut(s) 372
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
EaeI YGGCCR 2 cut(s) 37, 341
EagI CGGCCG 1 cut(s) 341
EclXI CGGCCG 1 cut(s) 341
Eco47I GGWCC 1 cut(s) 267
Eco52I CGGCCG 1 cut(s) 341
FaeI CATG 4 cut(s) 10, 98, 134, 164
FatI CATG 4 cut(s) 6, 94, 130, 160
FauI CCCGC 1 cut(s) 355
FauNDI CATATG 1 cut(s) 354
Fnu4HI GCNGC 4 cut(s) 66, 326, 329, 360
FokI GGATG 1 cut(s) 92
FseI GGCCGGCC 1 cut(s) 343
Fsp4HI GCNGC 4 cut(s) 66, 326, 329, 360
GluI GCNGC 4 cut(s) 66, 326, 329, 360
HaeIII GGCC 4 cut(s) 39, 50, 339, 343
HapII CCGG 2 cut(s) 340, 344
Hin1II CATG 4 cut(s) 10, 98, 134, 164
HpaII CCGG 2 cut(s) 340, 344
HphI GGTGA 1 cut(s) 86
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 3 cut(s) 161, 227, 265
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 1 cut(s) 207
HpyCH4III ACNGT 2 cut(s) 13, 246
HpyCH4V TGCA 1 cut(s) 94
HpyF3I CTNAG 1 cut(s) 372
Hsp92II CATG 4 cut(s) 10, 98, 134, 164
KroI GCCGGC 1 cut(s) 339
KroNI GCCGGC 1 cut(s) 341
Kzo9I GATC 1 cut(s) 223
LpnPI CCDG 5 cut(s) 18, 104, 250, 353, 357
Lsp1109I GCAGC 1 cut(s) 52
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MlsI TGGCCA 1 cut(s) 39
MluNI TGGCCA 1 cut(s) 39
MnlI CCTC 5 cut(s) 70, 204, 211, 280, 286
Mox20I TGGCCA 1 cut(s) 39
MroNI GCCGGC 1 cut(s) 339
MscI TGGCCA 1 cut(s) 39
MslI CAYNNNNRTG 1 cut(s) 159
Msp20I TGGCCA 1 cut(s) 39
MspI CCGG 2 cut(s) 340, 344
NaeI GCCGGC 1 cut(s) 341
NdeI CATATG 1 cut(s) 354
NdeII GATC 1 cut(s) 223
NgoMIV GCCGGC 1 cut(s) 339
NlaIII CATG 4 cut(s) 10, 98, 134, 164
NspI RCATGY 2 cut(s) 98, 134
PaeI GCATGC 1 cut(s) 134
PagI TCATGA 1 cut(s) 160
PdiI GCCGGC 1 cut(s) 341
PflMI CCANNNNNTGG 1 cut(s) 46
PkrI GCNGC 4 cut(s) 67, 327, 330, 361
PspPI GGNCC 2 cut(s) 49, 267
PstNI CAGNNNCTG 1 cut(s) 264
RigI GGCCGGCC 1 cut(s) 343
RsaI GTAC 1 cut(s) 367
RsaNI GTAC 1 cut(s) 366
RseI CAYNNNNRTG 1 cut(s) 159
SatI GCNGC 4 cut(s) 66, 326, 329, 360
Sau3AI GATC 1 cut(s) 223
Sau96I GGNCC 2 cut(s) 49, 267
SetI ASST 4 cut(s) 196, 222, 272, 297
SinI GGWCC 1 cut(s) 267
SmiMI CAYNNNNRTG 1 cut(s) 159
SphI GCATGC 1 cut(s) 134
SsiI CCGC 5 cut(s) 72, 325, 328, 359, 362
TaaI ACNGT 2 cut(s) 13, 246
TauI GCSGC 3 cut(s) 328, 331, 362
TseI GCWGC 1 cut(s) 65
TspDTI ATGAA 4 cut(s) 17, 143, 189, 341
TspGWI ACGGA 2 cut(s) 247, 268
Van91I CCANNNNNTGG 1 cut(s) 46
VpaK11BI GGWCC 1 cut(s) 267
XceI RCATGY 2 cut(s) 98, 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.