Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002186

Physical Location & Seq

Genomic Coordinates Reverse (-)

61354821 .. 61355367

Gene Structure 547 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21208

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGCGTGTGGTCATCCAGTATTACTCTGATGATTGGCCAACAAATGTAATCATGTTCGAGTGCAACATTCTTATATATAAGTTTGTGCAGGAACTTCACTTCTTTGTGACTCGAGGTGACGATAAAAATGAACTCATTTTAGCAACTCTACTTCAGGGATTCTTTGATGCAGTTGCCCTTCTCTTGAGGAACAATGTCGACAAAAGGGAGGCATTAGAGCACCTGGATCTCATACTCCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clat_adaptor_s

Protein Analysis

80

Amino Acids

9.47

Weight (kDa)

4.71

Isoelectric Point (pI)

33.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09800 AT3G09800 AT3G09800 AT3G09800 AT3G09800 AT4G08520
fragaria_vesca	FvH4_3g06220 FvH4_6g33990 FvH4_6g33990 FvH4_6g33990 FvH4_6g33990
malus_domestica	MD09G1190300.v1.1 MD17G1173400.v1.1
prunus_persica	Prupe.3G046200_v2.0.a1 Prupe.3G046200_v2.0.a1
pyrus_communis	pycom09g10680
rosa_chinensis	RchiOBHm_Chr2g0124081 RchiOBHm_Chr2g0143981 RchiOBHm_Chr5g0013101 RchiOBHm_Chr5g0031791 RchiOBHm_Chr5g0057151 RchiOBHm_Chr5g0057191 RchiOBHm_Chr5g0078651 RchiOBHm_Chr6g0257861 RchiOBHm_Chr7g0236651
rosa_laevigata	RLG00000020067 RLG00000031987
rosa_roxburghii	Rroxscaffold_1G00063480 Rroxscaffold_2G00097030 Rroxscaffold_2G00101440
rosa_rugosa	Rorug02G0207000 Rorug02G0385100 Rorug02G0385200 Rorug02G0385300 Rorug05G0007200
rosa_samantha	Rh2AG120100 Rh2AG437900 Rh5DG097000
rosa_wichuraiana	Rw2G035760 Rw5G008860 Rw5G047790 Rw5G047910 Rw7G026480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	198
AclWI	GGATC	1 cut(s)	234
AcoI	YGGCCR	1 cut(s)	35
AcuI	CTGAAG	1 cut(s)	137
AjnI	CCWGG	1 cut(s)	222
Alw21I	GWGCWC	1 cut(s)	222
AlwI	GGATC	1 cut(s)	234
Ama87I	CYCGRG	1 cut(s)	111
AoxI	GGCC	1 cut(s)	35
AsuHPI	GGTGA	1 cut(s)	128
AvaI	CYCGRG	1 cut(s)	111
BalI	TGGCCA	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	222
BciT130I	CCWGG	1 cut(s)	224
BfmI	CTRYAG	1 cut(s)	239
Bme1390I	CCNGG	1 cut(s)	224
BmeT110I	CYCGRG	1 cut(s)	111
BmrFI	CCNGG	1 cut(s)	224
BmsI	GCATC	1 cut(s)	157
BpuEI	CTTGAG	1 cut(s)	205
Bse1I	ACTGG	1 cut(s)	16
BseBI	CCWGG	1 cut(s)	224
BseGI	GGATG	1 cut(s)	12
BseNI	ACTGG	1 cut(s)	16
BsgI	GTGCAG	1 cut(s)	107
BshFI	GGCC	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	222
BsiHKCI	CYCGRG	1 cut(s)	111
BsnI	GGCC	1 cut(s)	37
BsoBI	CYCGRG	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	1 cut(s)	226
BspANI	GGCC	1 cut(s)	37
BspPI	GGATC	1 cut(s)	234
BsrI	ACTGG	1 cut(s)	16
BssMI	GATC	1 cut(s)	226
Bst2UI	CCWGG	1 cut(s)	224
BstF5I	GGATG	1 cut(s)	12
BstKTI	GATC	1 cut(s)	229
BstMBI	GATC	1 cut(s)	226
BstNI	CCWGG	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	222
BstSFI	CTRYAG	1 cut(s)	239
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	12
CviAII	CATG	1 cut(s)	52
CviJI	RGCY	1 cut(s)	37
CviKI_1	RGCY	1 cut(s)	37
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
EaeI	YGGCCR	1 cut(s)	35
Eco57I	CTGAAG	1 cut(s)	137
Eco88I	CYCGRG	1 cut(s)	111
EcoRII	CCWGG	1 cut(s)	222
FaeI	CATG	1 cut(s)	55
FaiI	YATR	6 cut(s)	53, 74, 76, 78, 233, 241
FatI	CATG	1 cut(s)	51
FblI	GTMKAC	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	37
Hin1II	CATG	1 cut(s)	55
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	2 cut(s)	109, 159
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	1 cut(s)	28
Hpy188III	TCNNGA	1 cut(s)	184
Hpy8I	GTNNAC	1 cut(s)	199
HpyAV	CCTTC	1 cut(s)	188
HpyCH4V	TGCA	3 cut(s)	63, 88, 170
Hsp92II	CATG	1 cut(s)	55
Kzo9I	GATC	1 cut(s)	226
LpnPI	CCDG	5 cut(s)	29, 74, 140, 209, 236
LweI	GCATC	1 cut(s)	157
MaeIII	GTNAC	2 cut(s)	106, 116
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MflI	RGATCY	1 cut(s)	226
MhlI	GDGCHC	1 cut(s)	222
MlsI	TGGCCA	1 cut(s)	37
MluNI	TGGCCA	1 cut(s)	37
MlyI	GAGTC	1 cut(s)	103
MnlI	CCTC	3 cut(s)	107, 180, 202
Mox20I	TGGCCA	1 cut(s)	37
MscI	TGGCCA	1 cut(s)	37
Msp20I	TGGCCA	1 cut(s)	37
MspR9I	CCNGG	1 cut(s)	224
MvaI	CCWGG	1 cut(s)	224
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	1 cut(s)	55
NmuCI	GTSAC	2 cut(s)	106, 116
PaeR7I	CTCGAG	1 cut(s)	111
PfeI	GAWTC	1 cut(s)	159
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
Psp6I	CCWGG	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	222
PspXI	VCTCGAGB	1 cut(s)	111
PsuI	RGATCY	1 cut(s)	226
SalI	GTCGAC	1 cut(s)	197
Sau3AI	GATC	1 cut(s)	226
SchI	GAGTC	1 cut(s)	103
ScrFI	CCNGG	1 cut(s)	224
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	2 cut(s)	118, 225
SfaNI	GCATC	1 cut(s)	157
SfcI	CTRYAG	1 cut(s)	239
Sfr274I	CTCGAG	1 cut(s)	111
SlaI	CTCGAG	1 cut(s)	111
SmlI	CTYRAG	2 cut(s)	111, 184
SmoI	CTYRAG	2 cut(s)	111, 184
StyD4I	CCNGG	1 cut(s)	222
TaqI	TCGA	3 cut(s)	57, 112, 198
TfiI	GAWTC	1 cut(s)	159
TseFI	GTSAC	2 cut(s)	106, 116
Tsp45I	GTSAC	2 cut(s)	106, 116
TspDTI	ATGAA	1 cut(s)	144
XhoI	CTCGAG	1 cut(s)	111
XmiI	GTMKAC	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.