RchiOBHm_Chr5g0057191

Coatomer subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002186
Physical Location & Seq
Forward (+)
61094410 .. 61094713
304 bp
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UTR
Exon/CDS
Intron
PRQ33399

Sequence Viewer

Length: 210 bp
ATGTTCGAGTGCAACGTTGTTATATATAAGTTTGTGCAGGAACTTCACTTCTTTGTGACTGGAGGTGACAATGAAAATGAACTCATTTTAGCAACTCTACTTCAGGGATTCTTTGATGCAATTGCCCTTCTTTTGAGGAAAAATGTCGACAAAAGGGAGGCATTAGAGCACCTGGATCTCATACTCCGACAGTTCAATGCTTTGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Clat_adaptor_s

Protein Analysis

69

Amino Acids

8.04

Weight (kDa)

4.89

Isoelectric Point (pI)

36.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clat_adaptor_s PF01217 6 - 59 2e-06 Clathrin adaptor complex small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 147
AclI AACGTT 1 cut(s) 15
AclWI GGATC 1 cut(s) 183
AcuI CTGAAG 1 cut(s) 86
AgsI TTSAA 1 cut(s) 196
AjnI CCWGG 1 cut(s) 171
Alw21I GWGCWC 1 cut(s) 171
AlwI GGATC 1 cut(s) 183
AsuHPI GGTGA 1 cut(s) 77
Bbv12I GWGCWC 1 cut(s) 171
BciT130I CCWGG 1 cut(s) 173
Bme1390I CCNGG 1 cut(s) 173
BmrFI CCNGG 1 cut(s) 173
BmsI GCATC 1 cut(s) 106
BpmI CTGGAG 1 cut(s) 81
Bse1I ACTGG 1 cut(s) 64
BseBI CCWGG 1 cut(s) 173
BseNI ACTGG 1 cut(s) 64
BsgI GTGCAG 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 171
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 1 cut(s) 175
BspPI GGATC 1 cut(s) 183
BsrI ACTGG 1 cut(s) 64
BssMI GATC 1 cut(s) 175
Bst2UI CCWGG 1 cut(s) 173
Bst4CI ACNGT 1 cut(s) 192
BstKTI GATC 1 cut(s) 178
BstMBI GATC 1 cut(s) 175
BstNI CCWGG 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 171
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 171
FaiI YATR 4 cut(s) 23, 25, 27, 182
FblI GTMKAC 1 cut(s) 147
GsuI CTGGAG 1 cut(s) 81
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 1 cut(s) 108
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 1 cut(s) 188
Hpy8I GTNNAC 1 cut(s) 148
HpyAV CCTTC 1 cut(s) 137
HpyCH4III ACNGT 1 cut(s) 192
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 3 cut(s) 12, 37, 119
HpySE526I ACGT 1 cut(s) 15
Kzo9I GATC 1 cut(s) 175
LpnPI CCDG 5 cut(s) 23, 45, 89, 158, 185
LweI GCATC 1 cut(s) 106
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 2 cut(s) 55, 65
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MfeI CAATTG 1 cut(s) 120
MflI RGATCY 1 cut(s) 175
MhlI GDGCHC 1 cut(s) 171
MluCI AATT 1 cut(s) 120
MnlI CCTC 3 cut(s) 56, 129, 151
MspR9I CCNGG 1 cut(s) 173
MunI CAATTG 1 cut(s) 120
MvaI CCWGG 1 cut(s) 173
NdeII GATC 1 cut(s) 175
NmuCI GTSAC 2 cut(s) 55, 65
PcsI WCGNNNNNNNCGW 1 cut(s) 12
PfeI GAWTC 1 cut(s) 108
Psp1406I AACGTT 1 cut(s) 15
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PsuI RGATCY 1 cut(s) 175
SalI GTCGAC 1 cut(s) 146
Sau3AI GATC 1 cut(s) 175
ScrFI CCNGG 1 cut(s) 173
SduI GDGCHC 1 cut(s) 171
SetI ASST 3 cut(s) 18, 67, 174
SfaNI GCATC 1 cut(s) 106
SgeI CNNG 6 cut(s) 19, 50, 72, 116, 184, 185
Sse9I AATT 1 cut(s) 120
StyD4I CCNGG 1 cut(s) 171
TaaI ACNGT 1 cut(s) 192
TaiI ACGT 1 cut(s) 18
TaqI TCGA 2 cut(s) 6, 147
TasI AATT 1 cut(s) 120
TfiI GAWTC 1 cut(s) 108
TseFI GTSAC 2 cut(s) 55, 65
Tsp45I GTSAC 2 cut(s) 55, 65
TspDTI ATGAA 2 cut(s) 87, 93
XmiI GTMKAC 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.