FvH4_6g33990

Coatomer subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002186
Physical Location & Seq
Forward (+)
26889376 .. 26892290
2915 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g33990.t4

Sequence Viewer

Length: 555 bp
ATGGGGAGTCTCTCCGGCTATCGTGATTCGTGCCCGTCTGTGAAGAACATTCTTCTTCTAGACTCTGAGGGGAAGCGTGTGGCTGTCAAGTATTACACAGATGATTGGCCAACCAATGGTGCAAAGCTAGCTTTTGAAAAATCTGTGTTTACTAAGACTCTAAAGACAAATGCAAGGATAGAAGCGGAGATCATGATGTTCGACAGCAACGTTGTTATATACAAGTTTATGCAGGACCTTCACTTCTTTGTGACTGGAGGTGACGATGAAAATGAACTCATTTTAGCCACTGTACTTCAGGGTTTCTTTGATGCAGTAGCCCTTCTCTTGAGGAACAATGTCGACAAAAGGGAGGCATTAGAGAACCTGGATCTCATACTTCTATGCTTTGATGAGATTGTGGATGGAGGGATGATACTTGAAACAGATCCAACTGTTATCGCAGGAAAGGTGGCAACTCATACCATGGATGCTGATGCACCATTGTCTGAGCAGACTATTACACAAGCATGGGCTACAGCAAGGGAACATCTAACCAGAACCCTTCTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Clat_adaptor_s

Protein Analysis

185

Amino Acids

20.53

Weight (kDa)

4.71

Isoelectric Point (pI)

29.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clat_adaptor_s PF01217 7 - 146 1.2e-21 Clathrin adaptor complex small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 116
AccI GTMKAC 1 cut(s) 342
AciI CCGC 1 cut(s) 185
AclI AACGTT 1 cut(s) 210
AclWI GGATC 2 cut(s) 378, 422
AcoI YGGCCR 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 281
AfaI GTAC 1 cut(s) 294
AfiI CCNNNNNNNGG 1 cut(s) 116
AgsI TTSAA 2 cut(s) 137, 422
AjnI CCWGG 1 cut(s) 366
AluBI AGCT 2 cut(s) 127, 131
AluI AGCT 2 cut(s) 127, 131
Alw26I GTCTC 1 cut(s) 14
AlwI GGATC 2 cut(s) 378, 422
AoxI GGCC 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 235
AsuHPI GGTGA 1 cut(s) 272
AsuNHI GCTAGC 1 cut(s) 127
AvaII GGWCC 1 cut(s) 235
BaeGI GKGCMC 1 cut(s) 35
BalI TGGCCA 1 cut(s) 109
BccI CCATC 1 cut(s) 398
BciT130I CCWGG 1 cut(s) 368
BcoDI GTCTC 1 cut(s) 14
BfaI CTAG 2 cut(s) 59, 128
BfmI CTRYAG 1 cut(s) 516
Bme1390I CCNGG 1 cut(s) 368
Bme18I GGWCC 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 235
BmrFI CCNGG 1 cut(s) 368
BmsI GCATC 3 cut(s) 301, 460, 466
BmtI GCTAGC 1 cut(s) 131
BpmI CTGGAG 1 cut(s) 276
BpuEI CTTGAG 1 cut(s) 349
BsaJI CCNNGG 1 cut(s) 465
Bsc4I CCNNNNNNNGG 1 cut(s) 116
Bse1I ACTGG 1 cut(s) 259
BseBI CCWGG 1 cut(s) 368
BseDI CCNNGG 1 cut(s) 465
BseGI GGATG 3 cut(s) 409, 417, 475
BseLI CCNNNNNNNGG 1 cut(s) 116
BseMII CTCAG 2 cut(s) 57, 480
BseNI ACTGG 1 cut(s) 259
BseSI GKGCMC 1 cut(s) 35
BshFI GGCC 1 cut(s) 109
BsiSI CCGG 1 cut(s) 15
BslI CCNNNNNNNGG 1 cut(s) 116
BsmAI GTCTC 1 cut(s) 14
BsnI GGCC 1 cut(s) 109
Bsp1286I GDGCHC 1 cut(s) 35
Bsp143I GATC 3 cut(s) 189, 370, 427
Bsp19I CCATGG 1 cut(s) 465
BspACI CCGC 1 cut(s) 185
BspANI GGCC 1 cut(s) 109
BspCNI CTCAG 2 cut(s) 58, 481
BspHI TCATGA 1 cut(s) 192
BspOI GCTAGC 1 cut(s) 131
BspPI GGATC 2 cut(s) 378, 422
BsrI ACTGG 1 cut(s) 259
BssECI CCNNGG 1 cut(s) 465
BssMI GATC 3 cut(s) 189, 370, 427
BssT1I CCWWGG 1 cut(s) 465
Bst2UI CCWGG 1 cut(s) 368
Bst4CI ACNGT 2 cut(s) 292, 436
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 3 cut(s) 66, 153, 489
BstDSI CCRYGG 1 cut(s) 465
BstF5I GGATG 3 cut(s) 409, 417, 475
BstKTI GATC 3 cut(s) 192, 373, 430
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 3 cut(s) 189, 370, 427
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNI CCWGG 1 cut(s) 368
BstSCI CCNGG 1 cut(s) 366
BstSFI CTRYAG 1 cut(s) 516
BstSLI GKGCMC 1 cut(s) 35
BstX2I RGATCY 2 cut(s) 370, 427
BstYI RGATCY 2 cut(s) 370, 427
BsuRI GGCC 1 cut(s) 109
BtgI CCRYGG 1 cut(s) 465
BtsCI GGATG 3 cut(s) 409, 417, 475
BtsIMutI CAGTG 1 cut(s) 288
Cac8I GCNNGC 1 cut(s) 129
CciI TCATGA 1 cut(s) 192
Cfr13I GGNCC 1 cut(s) 235
Csp6I GTAC 1 cut(s) 293
CviAII CATG 3 cut(s) 193, 466, 510
CviJI RGCY 8 cut(s) 18, 83, 109, 127, 131, 287, 320, 515
CviKI_1 RGCY 8 cut(s) 18, 83, 109, 127, 131, 287, 320, 515
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 3 cut(s) 66, 153, 489
DpnI GATC 3 cut(s) 191, 372, 429
DpnII GATC 3 cut(s) 189, 370, 427
EaeI YGGCCR 1 cut(s) 107
Eco130I CCWWGG 1 cut(s) 465
Eco47I GGWCC 1 cut(s) 235
Eco57I CTGAAG 1 cut(s) 281
EcoO109I RGGNCCY 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 366
EcoT14I CCWWGG 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 3 cut(s) 196, 469, 513
FaiI YATR 9 cut(s) 194, 218, 220, 230, 377, 385, 462, 467, 511
FatI CATG 3 cut(s) 192, 465, 509
FblI GTMKAC 1 cut(s) 342
FokI GGATG 3 cut(s) 416, 424, 482
FspBI CTAG 2 cut(s) 59, 128
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 1 cut(s) 109
HapII CCGG 1 cut(s) 15
Hin1II CATG 3 cut(s) 196, 469, 513
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HinfI GANTC 4 cut(s) 7, 26, 62, 157
HpaII CCGG 1 cut(s) 15
HphI GGTGA 1 cut(s) 272
Hpy166II GTNNAC 2 cut(s) 150, 343
Hpy188I TCNGA 2 cut(s) 67, 490
Hpy188III TCNNGA 4 cut(s) 23, 59, 193, 328
Hpy8I GTNNAC 2 cut(s) 150, 343
HpyAV CCTTC 3 cut(s) 248, 332, 554
HpyCH4III ACNGT 2 cut(s) 292, 436
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 5 cut(s) 122, 173, 232, 314, 479
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 3 cut(s) 66, 153, 489
HpySE526I ACGT 1 cut(s) 210
Hsp92II CATG 3 cut(s) 196, 469, 513
Kzo9I GATC 3 cut(s) 189, 370, 427
LpnPI CCDG 8 cut(s) 28, 218, 240, 284, 353, 380, 429, 550
LweI GCATC 3 cut(s) 301, 460, 466
MaeI CTAG 2 cut(s) 59, 128
MaeII ACGT 1 cut(s) 210
MaeIII GTNAC 2 cut(s) 250, 260
MalI GATC 3 cut(s) 191, 372, 429
MboI GATC 3 cut(s) 189, 370, 427
MboII GAAGA 3 cut(s) 44, 47, 55
MflI RGATCY 2 cut(s) 370, 427
MhlI GDGCHC 1 cut(s) 35
MlsI TGGCCA 1 cut(s) 109
MluNI TGGCCA 1 cut(s) 109
MlyI GAGTC 3 cut(s) 16, 56, 151
MmeI TCCRAC 1 cut(s) 455
MnlI CCTC 5 cut(s) 61, 251, 324, 346, 401
Mox20I TGGCCA 1 cut(s) 109
MscI TGGCCA 1 cut(s) 109
MslI CAYNNNNRTG 1 cut(s) 508
Msp20I TGGCCA 1 cut(s) 109
MspI CCGG 1 cut(s) 15
MspR9I CCNGG 1 cut(s) 368
MvaI CCWGG 1 cut(s) 368
MwoI GCNNNNNNNGC 1 cut(s) 128
NcoI CCATGG 1 cut(s) 465
NdeII GATC 3 cut(s) 189, 370, 427
NheI GCTAGC 1 cut(s) 127
NlaIII CATG 3 cut(s) 196, 469, 513
NmuCI GTSAC 2 cut(s) 250, 260
PagI TCATGA 1 cut(s) 192
PcsI WCGNNNNNNNCGW 1 cut(s) 207
PfeI GAWTC 1 cut(s) 26
PflMI CCANNNNNTGG 1 cut(s) 116
PleI GAGTC 3 cut(s) 15, 56, 151
PpsI GAGTC 3 cut(s) 15, 56, 151
PpuMI RGGWCCY 1 cut(s) 235
Psp1406I AACGTT 1 cut(s) 210
Psp5II RGGWCCY 1 cut(s) 235
Psp6I CCWGG 1 cut(s) 366
PspGI CCWGG 1 cut(s) 366
PspPI GGNCC 1 cut(s) 235
PspPPI RGGWCCY 1 cut(s) 235
PsuI RGATCY 2 cut(s) 370, 427
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
RseI CAYNNNNRTG 1 cut(s) 508
SalI GTCGAC 1 cut(s) 341
Sau3AI GATC 3 cut(s) 189, 370, 427
Sau96I GGNCC 1 cut(s) 235
SchI GAGTC 3 cut(s) 16, 56, 151
ScrFI CCNGG 1 cut(s) 368
SduI GDGCHC 1 cut(s) 35
SetI ASST 7 cut(s) 129, 133, 213, 240, 262, 369, 453
SfaNI GCATC 3 cut(s) 301, 460, 466
SfcI CTRYAG 1 cut(s) 516
SinI GGWCC 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 508
SmlI CTYRAG 1 cut(s) 328
SmoI CTYRAG 1 cut(s) 328
SsiI CCGC 1 cut(s) 185
SspMI CTAG 2 cut(s) 59, 128
StyD4I CCNGG 1 cut(s) 366
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 2 cut(s) 292, 436
TaiI ACGT 1 cut(s) 213
TaqI TCGA 2 cut(s) 201, 342
TatI WGTACW 1 cut(s) 292
TfiI GAWTC 1 cut(s) 26
TscAI CASTG 1 cut(s) 295
TseFI GTSAC 2 cut(s) 250, 260
Tsp45I GTSAC 2 cut(s) 250, 260
TspDTI ATGAA 2 cut(s) 282, 288
TspRI CASTG 1 cut(s) 295
Van91I CCANNNNNTGG 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 235
XbaI TCTAGA 1 cut(s) 58
XmiI GTMKAC 1 cut(s) 342
XspI CTAG 2 cut(s) 59, 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.