Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002186

Physical Location & Seq

Genomic Coordinates Reverse (-)

18347693 .. 18350915

Gene Structure 3223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00097030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGTTCGAGTGCAACGTTGTTATATATAAGTTTGTGCAGGAACTTCACTTCTTTGTGATTGAAGGTGACGATGAAAATGAACTCATTTTAGCAACTCTACTTCATGGATTCTTTGATGCAGTTGCCCTTCTCTTGAGGAAAAATGTCGACAAAAGGGAGGCATTAGAGCACCTGGATCTCATACTCCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clat_adaptor_s

Protein Analysis

63

Amino Acids

7.37

Weight (kDa)

4.59

Isoelectric Point (pI)

34.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clat_adaptor_s	PF01217	6 - 58	3.5e-06	Clathrin adaptor complex small chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09800 AT3G09800 AT3G09800 AT3G09800 AT3G09800 AT4G08520
fragaria_vesca	FvH4_3g06220 FvH4_6g33990 FvH4_6g33990 FvH4_6g33990 FvH4_6g33990
malus_domestica	MD09G1190300.v1.1 MD17G1173400.v1.1
prunus_persica	Prupe.3G046200_v2.0.a1 Prupe.3G046200_v2.0.a1
pyrus_communis	pycom09g10680
rosa_chinensis	RchiOBHm_Chr2g0124081 RchiOBHm_Chr2g0143981 RchiOBHm_Chr5g0013101 RchiOBHm_Chr5g0031791 RchiOBHm_Chr5g0057151 RchiOBHm_Chr5g0057191 RchiOBHm_Chr5g0078651 RchiOBHm_Chr6g0257861 RchiOBHm_Chr7g0236651
rosa_laevigata	RLG00000020067 RLG00000031987
rosa_roxburghii	Rroxscaffold_1G00063480 Rroxscaffold_2G00097030 Rroxscaffold_2G00101440
rosa_rugosa	Rorug02G0207000 Rorug02G0385100 Rorug02G0385200 Rorug02G0385300 Rorug05G0007200
rosa_samantha	Rh2AG120100 Rh2AG437900 Rh5DG097000
rosa_wichuraiana	Rw2G035760 Rw5G008860 Rw5G047790 Rw5G047910 Rw7G026480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	147
AclI	AACGTT	1 cut(s)	15
AclWI	GGATC	1 cut(s)	183
AgsI	TTSAA	1 cut(s)	62
AjnI	CCWGG	1 cut(s)	171
Alw21I	GWGCWC	1 cut(s)	171
AlwI	GGATC	1 cut(s)	183
AsuHPI	GGTGA	1 cut(s)	77
Bbv12I	GWGCWC	1 cut(s)	171
BciT130I	CCWGG	1 cut(s)	173
BfmI	CTRYAG	1 cut(s)	188
Bme1390I	CCNGG	1 cut(s)	173
BmrFI	CCNGG	1 cut(s)	173
BmsI	GCATC	1 cut(s)	106
BpuEI	CTTGAG	1 cut(s)	154
BseBI	CCWGG	1 cut(s)	173
BsgI	GTGCAG	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	171
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	1 cut(s)	175
BspPI	GGATC	1 cut(s)	183
BssMI	GATC	1 cut(s)	175
Bst2UI	CCWGG	1 cut(s)	173
BstKTI	GATC	1 cut(s)	178
BstMBI	GATC	1 cut(s)	175
BstNI	CCWGG	1 cut(s)	173
BstSCI	CCNGG	1 cut(s)	171
BstSFI	CTRYAG	1 cut(s)	188
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
CviAII	CATG	1 cut(s)	104
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	171
FaeI	CATG	1 cut(s)	107
FaiI	YATR	6 cut(s)	23, 25, 27, 105, 182, 190
FatI	CATG	1 cut(s)	103
FblI	GTMKAC	1 cut(s)	147
Hin1II	CATG	1 cut(s)	107
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	1 cut(s)	108
HphI	GGTGA	1 cut(s)	77
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188III	TCNNGA	1 cut(s)	133
Hpy8I	GTNNAC	1 cut(s)	148
HpyAV	CCTTC	2 cut(s)	56, 137
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	3 cut(s)	12, 37, 119
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	107
Kzo9I	GATC	1 cut(s)	175
LpnPI	CCDG	3 cut(s)	23, 158, 185
LweI	GCATC	1 cut(s)	106
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	65
MalI	GATC	1 cut(s)	177
MboI	GATC	1 cut(s)	175
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	171
MnlI	CCTC	2 cut(s)	129, 151
MspR9I	CCNGG	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	173
NdeII	GATC	1 cut(s)	175
NlaIII	CATG	1 cut(s)	107
NmuCI	GTSAC	1 cut(s)	65
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	108
Psp1406I	AACGTT	1 cut(s)	15
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PsuI	RGATCY	1 cut(s)	175
SalI	GTCGAC	1 cut(s)	146
Sau3AI	GATC	1 cut(s)	175
ScrFI	CCNGG	1 cut(s)	173
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	3 cut(s)	18, 67, 174
SfaNI	GCATC	1 cut(s)	106
SfcI	CTRYAG	1 cut(s)	188
SgeI	CNNG	6 cut(s)	19, 50, 116, 145, 184, 185
SmlI	CTYRAG	1 cut(s)	133
SmoI	CTYRAG	1 cut(s)	133
StyD4I	CCNGG	1 cut(s)	171
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	2 cut(s)	6, 147
TfiI	GAWTC	1 cut(s)	108
TseFI	GTSAC	1 cut(s)	65
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	3 cut(s)	87, 92, 93
XmiI	GTMKAC	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.