RLG00000020067

Coatomer subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002186
Physical Location & Seq
Forward (+)
60720592 .. 60722640
2049 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020067

Sequence Viewer

Length: 555 bp
ATGGGAAGTCTCTTCGGTTATCGTGATTCGAGCCCATCTGTGAAGAACATTCTTCTTCTAGACTCTGAAGGGAAGCGTGTGGCCGTCAAGTATTACTCTGATGATTGGCCGACAAATGCTGCAAAGCTTGCTTTTGAAAGATCTGTGTTTGCTAAGACTCTAAAGACAAATGCAAGGATAGAAGCGGAGATAATGATGTTTGAGAGCCACGTTGTTACATATAAGTTTGTGCAGGACCTTCACTTCTTTGTGACTGGAGGTGACGATGAAAACGAACTCATTTTAGCCACTGTACTTCAGGGGTTCTTTGATGCAGTTGCCCTTCTCTTGAGGAACAACGTCGAAAAAAGAGAGGCACTAGAGAACCTGGATCTCATACTTCTATGCTTTGATGAGATCGTTGATGGAGGGATGATACTTGAAACAGATCCAACTGTTATCGCAGGAAAGGTGGCAACTCATACCATGGATGCTGATGCACCATTGTCTGAACAGACTATAACACAAGCATGGGCTACCGCAAGGGAACATCTAACCAGAACCCTTCTAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Clat_adaptor_s

Protein Analysis

185

Amino Acids

20.57

Weight (kDa)

4.82

Isoelectric Point (pI)

34.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clat_adaptor_s PF01217 14 - 153 2.7e-21 Clathrin adaptor complex small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 185, 519
AclWI GGATC 2 cut(s) 378, 422
AcoI YGGCCR 2 cut(s) 81, 107
AcuI CTGAAG 2 cut(s) 87, 281
AfaI GTAC 1 cut(s) 294
AgsI TTSAA 2 cut(s) 137, 422
AjnI CCWGG 1 cut(s) 366
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
Alw26I GTCTC 1 cut(s) 14
AlwI GGATC 2 cut(s) 378, 422
AoxI GGCC 2 cut(s) 81, 107
ApeKI GCWGC 1 cut(s) 119
AspS9I GGNCC 1 cut(s) 235
AsuHPI GGTGA 1 cut(s) 272
AvaII GGWCC 1 cut(s) 235
BanII GRGCYC 1 cut(s) 35
BbvI GCAGC 1 cut(s) 106
BccI CCATC 2 cut(s) 43, 398
BceAI ACGGC 1 cut(s) 68
BciT130I CCWGG 1 cut(s) 368
BcoDI GTCTC 1 cut(s) 14
BfaI CTAG 2 cut(s) 59, 359
BglII AGATCT 1 cut(s) 140
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 1 cut(s) 368
Bme18I GGWCC 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 235
BmrFI CCNGG 1 cut(s) 368
BmsI GCATC 3 cut(s) 301, 460, 466
BpmI CTGGAG 1 cut(s) 276
BpuEI CTTGAG 1 cut(s) 349
BsaJI CCNNGG 1 cut(s) 465
Bse1I ACTGG 1 cut(s) 259
BseBI CCWGG 1 cut(s) 368
BseDI CCNNGG 1 cut(s) 465
BseGI GGATG 2 cut(s) 417, 475
BseNI ACTGG 1 cut(s) 259
BseXI GCAGC 1 cut(s) 106
BsgI GTGCAG 1 cut(s) 251
BshFI GGCC 2 cut(s) 83, 109
BsmAI GTCTC 1 cut(s) 14
BsnI GGCC 2 cut(s) 83, 109
Bsp1286I GDGCHC 1 cut(s) 35
Bsp143I GATC 4 cut(s) 140, 370, 396, 427
Bsp19I CCATGG 1 cut(s) 465
BspACI CCGC 2 cut(s) 185, 519
BspANI GGCC 2 cut(s) 83, 109
BspPI GGATC 2 cut(s) 378, 422
BsrI ACTGG 1 cut(s) 259
BssECI CCNNGG 1 cut(s) 465
BssMI GATC 4 cut(s) 140, 370, 396, 427
BssT1I CCWWGG 1 cut(s) 465
Bst2UI CCWGG 1 cut(s) 368
Bst4CI ACNGT 2 cut(s) 292, 436
Bst6I CTCTTC 1 cut(s) 17
BstAPI GCANNNNNTGC 1 cut(s) 128
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 1 cut(s) 153
BstDSI CCRYGG 1 cut(s) 465
BstF5I GGATG 2 cut(s) 417, 475
BstKTI GATC 4 cut(s) 143, 373, 399, 430
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 4 cut(s) 140, 370, 396, 427
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNI CCWGG 1 cut(s) 368
BstSCI CCNGG 1 cut(s) 366
BstV1I GCAGC 1 cut(s) 106
BstX2I RGATCY 3 cut(s) 140, 370, 427
BstYI RGATCY 3 cut(s) 140, 370, 427
BsuRI GGCC 2 cut(s) 83, 109
BtgI CCRYGG 1 cut(s) 465
BtsCI GGATG 2 cut(s) 417, 475
BtsIMutI CAGTG 1 cut(s) 288
Cac8I GCNNGC 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 235
Csp6I GTAC 1 cut(s) 293
CviAII CATG 2 cut(s) 466, 510
CviJI RGCY 7 cut(s) 33, 83, 109, 127, 207, 287, 515
CviKI_1 RGCY 7 cut(s) 33, 83, 109, 127, 207, 287, 515
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 1 cut(s) 153
DpnI GATC 4 cut(s) 142, 372, 398, 429
DpnII GATC 4 cut(s) 140, 370, 396, 427
EaeI YGGCCR 2 cut(s) 81, 107
Eam1104I CTCTTC 1 cut(s) 17
EarI CTCTTC 1 cut(s) 17
Eco130I CCWWGG 1 cut(s) 465
Eco24I GRGCYC 1 cut(s) 35
Eco47I GGWCC 1 cut(s) 235
Eco57I CTGAAG 2 cut(s) 87, 281
EcoO109I RGGNCCY 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 366
EcoT14I CCWWGG 1 cut(s) 465
EcoT38I GRGCYC 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 2 cut(s) 469, 513
FaiI YATR 8 cut(s) 220, 222, 377, 385, 462, 467, 500, 511
FatI CATG 2 cut(s) 465, 509
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 2 cut(s) 424, 482
FriOI GRGCYC 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 120
FspBI CTAG 2 cut(s) 59, 359
GluI GCNGC 1 cut(s) 120
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 2 cut(s) 83, 109
Hin1II CATG 2 cut(s) 469, 513
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 3 cut(s) 26, 62, 157
HphI GGTGA 1 cut(s) 272
Hpy188I TCNGA 3 cut(s) 67, 100, 490
Hpy188III TCNNGA 3 cut(s) 23, 59, 328
Hpy99I CGWCG 1 cut(s) 344
HpyAV CCTTC 4 cut(s) 62, 248, 332, 554
HpyCH4III ACNGT 2 cut(s) 292, 436
HpyCH4IV ACGT 2 cut(s) 210, 339
HpyCH4V TGCA 5 cut(s) 122, 173, 232, 314, 479
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 1 cut(s) 153
HpySE526I ACGT 2 cut(s) 210, 339
Hsp92II CATG 2 cut(s) 469, 513
Kzo9I GATC 4 cut(s) 140, 370, 396, 427
LpnPI CCDG 7 cut(s) 218, 240, 284, 353, 380, 429, 550
Lsp1109I GCAGC 1 cut(s) 106
LweI GCATC 3 cut(s) 301, 460, 466
MaeI CTAG 2 cut(s) 59, 359
MaeII ACGT 2 cut(s) 210, 339
MaeIII GTNAC 3 cut(s) 214, 250, 260
MalI GATC 4 cut(s) 142, 372, 398, 429
MboI GATC 4 cut(s) 140, 370, 396, 427
MboII GAAGA 4 cut(s) 4, 44, 47, 55
MflI RGATCY 3 cut(s) 140, 370, 427
MhlI GDGCHC 1 cut(s) 35
MlyI GAGTC 2 cut(s) 56, 151
MmeI TCCRAC 1 cut(s) 455
MnlI CCTC 4 cut(s) 251, 324, 346, 401
MslI CAYNNNNRTG 1 cut(s) 508
MspR9I CCNGG 1 cut(s) 368
MvaI CCWGG 1 cut(s) 368
MwoI GCNNNNNNNGC 1 cut(s) 128
NcoI CCATGG 1 cut(s) 465
NdeII GATC 4 cut(s) 140, 370, 396, 427
NlaIII CATG 2 cut(s) 469, 513
NmuCI GTSAC 2 cut(s) 250, 260
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PfeI GAWTC 1 cut(s) 26
PkrI GCNGC 1 cut(s) 121
PleI GAGTC 2 cut(s) 56, 151
PpsI GAGTC 2 cut(s) 56, 151
PpuMI RGGWCCY 1 cut(s) 235
Psp5II RGGWCCY 1 cut(s) 235
Psp6I CCWGG 1 cut(s) 366
PspGI CCWGG 1 cut(s) 366
PspPI GGNCC 1 cut(s) 235
PspPPI RGGWCCY 1 cut(s) 235
PsuI RGATCY 3 cut(s) 140, 370, 427
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
RseI CAYNNNNRTG 1 cut(s) 508
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 4 cut(s) 140, 370, 396, 427
Sau96I GGNCC 1 cut(s) 235
SchI GAGTC 2 cut(s) 56, 151
ScrFI CCNGG 1 cut(s) 368
SduI GDGCHC 1 cut(s) 35
SetI ASST 7 cut(s) 129, 213, 240, 262, 342, 369, 453
SfaNI GCATC 3 cut(s) 301, 460, 466
SinI GGWCC 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 508
SmlI CTYRAG 1 cut(s) 328
SmoI CTYRAG 1 cut(s) 328
SsiI CCGC 2 cut(s) 185, 519
SspMI CTAG 2 cut(s) 59, 359
StyD4I CCNGG 1 cut(s) 366
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 2 cut(s) 292, 436
TaiI ACGT 2 cut(s) 213, 342
TaqI TCGA 2 cut(s) 29, 342
TatI WGTACW 1 cut(s) 292
TfiI GAWTC 1 cut(s) 26
TscAI CASTG 1 cut(s) 295
TseFI GTSAC 2 cut(s) 250, 260
TseI GCWGC 1 cut(s) 119
Tsp45I GTSAC 2 cut(s) 250, 260
TspDTI ATGAA 1 cut(s) 282
TspRI CASTG 1 cut(s) 295
VpaK11BI GGWCC 1 cut(s) 235
XbaI TCTAGA 1 cut(s) 58
XspI CTAG 2 cut(s) 59, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.